Miyakogusa Predicted Gene
- Lj0g3v0294399.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0294399.1 tr|Q6J724|Q6J724_RAT BRCA1-associated RING domain
protein 1 beta isoform OS=Rattus norvegicus
GN=Bar,29.41,3e-18,ZF_RING_1,Zinc finger, RING-type, conserved site;
BRCT,BRCT domain; zf-HC5HC2H,NULL;
zf-C3HC4_2,NULL,NODE_60048_length_2303_cov_14.995224.path1.1
(708 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated... 528 e-150
AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer asso... 528 e-150
AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer susceptibi... 330 2e-90
AT3G15120.1 | Symbols: | P-loop containing nucleoside triphosph... 63 8e-10
>AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated
RING 1 | chr1:1036610-1040045 FORWARD LENGTH=713
Length = 713
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 313/737 (42%), Positives = 427/737 (57%), Gaps = 74/737 (10%)
Query: 13 LMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYA 72
LMNPW+LH QKL LELKCPLCL L +PVLLPCDH+FCDSC+ SS S C VCK+K+
Sbjct: 8 LMNPWVLHLQKLELELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKSKHP 67
Query: 73 QTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNF 132
+ R++ F+E++++IY+SL+A+ S L Q Q D +Y N
Sbjct: 68 KKGKRDLRFMESVISIYKSLNAAV------------SVHLPQLQIPNDCNYKN------- 108
Query: 133 SQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRS---RVEIGD 189
+ NSN GE+ S +T +++ SGG D P P R + D
Sbjct: 109 -DALNNSNSPKHGESEDSEMT----DKDVSKRSGGTDSSSRDGSPLPTSEESDPRPKHQD 163
Query: 190 YVE---------MDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDHPFNP---EILENSSL 237
+ E + AA ++P + + N S+ P N I +S +
Sbjct: 164 WTEKQLSDHLLLYEFESEYDAANHTPESYTEQAAKNVRDITASEQPSNAARKRICGDSFI 223
Query: 238 KRASTGKGNLKERKSQFRSESSASETDKPT----------------RDLKRKKYLTKGDD 281
+ +S N K + + +D PT +D KRK+ +T D
Sbjct: 224 QESSP---NPKTQDPTLLRLMESLRSDDPTDYVKAQNHQLPKSHTEQDSKRKRDITASDA 280
Query: 282 HIQH--VSTHHSKLVDSHCGLDL--KSGKEPGELLPANIPIDLNPSTS---ICSFCQSSE 334
H V + L+ +D K + L I L ++S IC FCQS+
Sbjct: 281 MENHLKVPKRENNLMQKSADIDCNGKCSANSDDQLSEKISKALEQTSSNITICGFCQSAR 340
Query: 335 TSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAK 394
SEATG MLHY+ G+ V GD + NVIHVH C++WAPQVY+ +T KNLKAE+ARG K
Sbjct: 341 VSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLKAELARGMK 400
Query: 395 LKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSR 454
+KC+ C LKGAALGC+VKSC+R+YHVPCA ++S CRWD E +LLLCP HS+ KFP+EKS
Sbjct: 401 IKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLCPAHSSVKFPNEKSG 460
Query: 455 PKKQATQEHPA--SAHLSSQLSNPLGAFHDDGKKVVFCGSALSDEEKVLLINFASKVGAT 512
+ + P A L S P AF K++V CGSALS +K L+ + A + AT
Sbjct: 461 HRVSRAEPLPKINPAELCSLEQTP--AF---TKELVLCGSALSKSDKKLMESLAVRFNAT 515
Query: 513 VTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYE 572
++++W VTHVIA+TD GAC+RTLKVLM ILNG+W++ W+KA +K V+EEP+E
Sbjct: 516 ISRYWNPSVTHVIASTDEKGACTRTLKVLMGILNGKWIINAAWMKASLKASQPVDEEPFE 575
Query: 573 ISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTS 632
I +D QGC GPK RL A N+PKLF GLKFYF GD+ YKEDL++LV+V GG +L +
Sbjct: 576 IQIDTQGCQDGPKTARLRAETNKPKLFEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNT 635
Query: 633 KDKL--EAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQRLNEAEDLAANTGSQVIG 690
+D+L E+ + + S+ ++VYN+DPP G LG+EV+ +WQR N+AE LA+ TGS+++G
Sbjct: 636 EDELGAESSNNVNDQRSSSIVVYNIDPPHGCALGEEVTIIWQRANDAEALASQTGSRLVG 695
Query: 691 HTWILESIAACKLQPFI 707
HTW+LESIA KL P I
Sbjct: 696 HTWVLESIAGYKLHPVI 712
>AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer
associated RING 1 | chr1:1036610-1040045 FORWARD
LENGTH=714
Length = 714
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 313/738 (42%), Positives = 427/738 (57%), Gaps = 75/738 (10%)
Query: 13 LMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYA 72
LMNPW+LH QKL LELKCPLCL L +PVLLPCDH+FCDSC+ SS S C VCK+K+
Sbjct: 8 LMNPWVLHLQKLELELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKSKHP 67
Query: 73 QTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNF 132
+ R++ F+E++++IY+SL+A+ S L Q Q D +Y N
Sbjct: 68 KKARRDLRFMESVISIYKSLNAAV------------SVHLPQLQIPNDCNYKN------- 108
Query: 133 SQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRS---RVEIGD 189
+ NSN GE+ S +T +++ SGG D P P R + D
Sbjct: 109 -DALNNSNSPKHGESEDSEMT----DKDVSKRSGGTDSSSRDGSPLPTSEESDPRPKHQD 163
Query: 190 YVE---------MDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDHPFNP---EILENSSL 237
+ E + AA ++P + + N S+ P N I +S +
Sbjct: 164 WTEKQLSDHLLLYEFESEYDAANHTPESYTEQAAKNVRDITASEQPSNAARKRICGDSFI 223
Query: 238 KRASTGKGNLKERKSQFRSESSASETDKPT-----------------RDLKRKKYLTKGD 280
+ +S N K + + +D PT +D KRK+ +T D
Sbjct: 224 QESSP---NPKTQDPTLLRLMESLRSDDPTDYVKAQNHQQLPKSHTEQDSKRKRDITASD 280
Query: 281 DHIQH--VSTHHSKLVDSHCGLDL--KSGKEPGELLPANIPIDLNPSTS---ICSFCQSS 333
H V + L+ +D K + L I L ++S IC FCQS+
Sbjct: 281 AMENHLKVPKRENNLMQKSADIDCNGKCSANSDDQLSEKISKALEQTSSNITICGFCQSA 340
Query: 334 ETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGA 393
SEATG MLHY+ G+ V GD + NVIHVH C++WAPQVY+ +T KNLKAE+ARG
Sbjct: 341 RVSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLKAELARGM 400
Query: 394 KLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKS 453
K+KC+ C LKGAALGC+VKSC+R+YHVPCA ++S CRWD E +LLLCP HS+ KFP+EKS
Sbjct: 401 KIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLCPAHSSVKFPNEKS 460
Query: 454 RPKKQATQEHPA--SAHLSSQLSNPLGAFHDDGKKVVFCGSALSDEEKVLLINFASKVGA 511
+ + P A L S P AF K++V CGSALS +K L+ + A + A
Sbjct: 461 GHRVSRAEPLPKINPAELCSLEQTP--AF---TKELVLCGSALSKSDKKLMESLAVRFNA 515
Query: 512 TVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPY 571
T++++W VTHVIA+TD GAC+RTLKVLM ILNG+W++ W+KA +K V+EEP+
Sbjct: 516 TISRYWNPSVTHVIASTDEKGACTRTLKVLMGILNGKWIINAAWMKASLKASQPVDEEPF 575
Query: 572 EISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLT 631
EI +D QGC GPK RL A N+PKLF GLKFYF GD+ YKEDL++LV+V GG +L
Sbjct: 576 EIQIDTQGCQDGPKTARLRAETNKPKLFEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILN 635
Query: 632 SKDKL--EAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQRLNEAEDLAANTGSQVI 689
++D+L E+ + + S+ ++VYN+DPP G LG+EV+ +WQR N+AE LA+ TGS+++
Sbjct: 636 TEDELGAESSNNVNDQRSSSIVVYNIDPPHGCALGEEVTIIWQRANDAEALASQTGSRLV 695
Query: 690 GHTWILESIAACKLQPFI 707
GHTW+LESIA KL P I
Sbjct: 696 GHTWVLESIAGYKLHPVI 713
>AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer
susceptibility1 | chr4:11248174-11252633 FORWARD
LENGTH=941
Length = 941
Score = 330 bits (846), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/395 (43%), Positives = 233/395 (58%), Gaps = 31/395 (7%)
Query: 327 CSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLK 386
C+FCQ SE +EA+G M HY G+ V D VIHVH+ C +WAP VYF D T NL
Sbjct: 564 CAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEWAPNVYFNDLTIVNLD 623
Query: 387 AEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNA 446
E+ R ++ CS CGLKGAALGCY KSCK ++HV CA + CRWD K+++LCP+ ++
Sbjct: 624 VELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRWDNVKFVMLCPLDASI 683
Query: 447 KFPHEKSRPKKQATQEHPASAHLSSQLSNPLGA----------FHDDGKKVVFCGSALSD 496
K P E++ K + + P L SQ G FH KK+V S L+
Sbjct: 684 KLPCEEANSKDRKCKRTPKEP-LHSQPKQVSGKANIRELHIKQFHGFSKKLVLSCSGLTV 742
Query: 497 EEKVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWI 556
EEK ++ FA G T++K W S VTHVIA+ + NGAC RTLK +MAIL G+W+L IDWI
Sbjct: 743 EEKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWI 802
Query: 557 KACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKE 616
KACMK V EEPYEI++D G GP GR AL +PKLF+GLKFY GD+ +YK
Sbjct: 803 KACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKKPKLFTGLKFYIMGDFELAYKG 862
Query: 617 DLEDLVEVGGGAVL----TSKDKLEAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQ 672
L+DL+ GG +L S D EA + ++V++++P + TL Q
Sbjct: 863 YLQDLIVAAGGTILRRRPVSSDDNEA---------STIVVFSVEPSKK-------KTLTQ 906
Query: 673 RLNEAEDLAANTGSQVIGHTWILESIAACKLQPFI 707
R ++AE LA + ++ +W+L+SIA C++ I
Sbjct: 907 RRSDAEALAKSARARAASSSWVLDSIAGCQILVLI 941
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 20 HFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNV 79
H +++ ELKCP+CLSL+ V L C+H+FC++C+V S + C VCK Y + +IR
Sbjct: 6 HLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGA 65
Query: 80 PFVENMVAIYRSL-DASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPN 138
P ++++V+IY+++ DAS + Q + S +Q RD+S ++KA +
Sbjct: 66 PHMDSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQ---VRDAS---VEKAS-------D 112
Query: 139 SNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRSRVEI 187
N G + R S + K +E+++ + G +KP + RV++
Sbjct: 113 KNRQGSRKGRASKRNEYGKTKEIDVDAPGPIV----MKPSSQTKKRVQL 157
>AT3G15120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5088487-5095482
REVERSE LENGTH=1954
Length = 1954
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 364 VHRCCVDWAPQVYFVDETC-KNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPC 422
VH+ C W+P+VYF C KN++A + RG LKC+ C GA GC PC
Sbjct: 560 VHQNCAVWSPEVYFAGVGCLKNIRAALFRGRSLKCTRCDRPGATTGCR----------PC 609
Query: 423 AMDVSTCRWDQEKYLLLCPVHSNAKFPH 450
A + C +D K+L+ C H + PH
Sbjct: 610 AR-ANGCIFDHRKFLIACTDHRHHFQPH 636