Miyakogusa Predicted Gene

Lj0g3v0294299.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0294299.2 Non Chatacterized Hit- tr|A5BST0|A5BST0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,47.24,2e-18,DUF4137,Putative sodium bile acid cotransporter; GB
DEF: HYPOTHETICAL PROTEIN F18O21_120,NULL; FAMIL,CUFF.19705.2
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56160.1 | Symbols:  | Sodium Bile acid symporter family | ch...   112   6e-26

>AT3G56160.1 | Symbols:  | Sodium Bile acid symporter family |
           chr3:20837733-20841541 REVERSE LENGTH=436
          Length = 436

 Score =  112 bits (280), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 81/116 (69%), Gaps = 5/116 (4%)

Query: 2   VKPRVFLVAIXXXXXXXXXXXVFNSIAVWSLSIISGGRNSVFSRRENANALILVASQKTL 61
           V+P+VFL A+            FN++++  LS ++GG  S    +EN+ A++LV+SQKTL
Sbjct: 324 VQPKVFLAAVGIGILLHLSLLAFNAVSIRILSGLTGGSKS---SKENSTAVLLVSSQKTL 380

Query: 62  PVMVAVIETLHGAFGESGLLVLPCIAAHLNQVIVDSFLVNFL--RPRVDSNKVKVA 115
           PVMVAV+E L GAFGE+GLLVLPC+AAHLNQ+++DS LVN    R +  S KVK A
Sbjct: 381 PVMVAVVEQLGGAFGETGLLVLPCVAAHLNQIMIDSVLVNLWLRRGKDTSTKVKTA 436