Miyakogusa Predicted Gene

Lj0g3v0293709.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0293709.1 tr|B8HWS8|B8HWS8_CYAP4 Chloride channel core
OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=Cya,34.91,2e-17,Clc chloride channel,Chloride channel, core;
Voltage_CLC,Chloride channel, voltage gated; no descrip,CUFF.19661.1
         (358 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55620.2 | Symbols: CLC-F, ATCLC-F | chloride channel F | chr...   365   e-101
AT1G55620.1 | Symbols: CLC-F, ATCLC-F, CLCF | chloride channel F...   241   7e-64
AT4G35440.1 | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E...   142   4e-34
AT4G35440.2 | Symbols: CLC-E | chloride channel E | chr4:1683636...   142   4e-34

>AT1G55620.2 | Symbols: CLC-F, ATCLC-F | chloride channel F |
           chr1:20787338-20790990 REVERSE LENGTH=781
          Length = 781

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/254 (73%), Positives = 197/254 (77%), Gaps = 2/254 (0%)

Query: 99  DVLADSAPPEWAXXXXXXXXXXXXXXFVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLA 158
           +VL DSAPPEWA               VA FNKGVHVIHEWAWAGTPNEGAAWLRLQRLA
Sbjct: 119 EVLGDSAPPEWALLLIGCLIGVAAGICVAGFNKGVHVIHEWAWAGTPNEGAAWLRLQRLA 178

Query: 159 DTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVT 218
           DTWHRILLIPVTGGVIVGMM GLLEILDQI+Q S+SSQRQG D LAGI P IKAIQAAVT
Sbjct: 179 DTWHRILLIPVTGGVIVGMMHGLLEILDQIRQ-SNSSQRQGLDFLAGIYPVIKAIQAAVT 237

Query: 219 LGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERRIXXXXXXXXXXXXXXXXXXVAGCFF 278
           LGTGCSLGPEGPSVDIGKSCANGF+LMMENNRERRI                  VAGCFF
Sbjct: 238 LGTGCSLGPEGPSVDIGKSCANGFALMMENNRERRIALTAAGAASGIASGFNAAVAGCFF 297

Query: 279 AIETVLRPLRAENSPPFTTAMIILASVISSTVSNVIQGTQSAFTVPEYQLKSAAGTFLQY 338
           AIETVLRPLRAENSPPFTTAMIILASVISSTVSN + GTQSAFTVP Y LKSAA   L Y
Sbjct: 298 AIETVLRPLRAENSPPFTTAMIILASVISSTVSNALLGTQSAFTVPSYDLKSAAELPL-Y 356

Query: 339 FCVYYIQSRFAIIF 352
             +  +    +++F
Sbjct: 357 LILGMLCGAVSVVF 370


>AT1G55620.1 | Symbols: CLC-F, ATCLC-F, CLCF | chloride channel F |
           chr1:20787338-20790313 REVERSE LENGTH=585
          Length = 585

 Score =  241 bits (614), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 128/156 (82%), Gaps = 1/156 (0%)

Query: 177 MMCGLLEILDQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGK 236
           MM GLLEILDQI+QS +SSQRQG D LAGI P IKAIQAAVTLGTGCSLGPEGPSVDIGK
Sbjct: 1   MMHGLLEILDQIRQS-NSSQRQGLDFLAGIYPVIKAIQAAVTLGTGCSLGPEGPSVDIGK 59

Query: 237 SCANGFSLMMENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSPPFT 296
           SCANGF+LMMENNRERRI                  VAGCFFAIETVLRPLRAENSPPFT
Sbjct: 60  SCANGFALMMENNRERRIALTAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFT 119

Query: 297 TAMIILASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           TAMIILASVISSTVSN + GTQSAFTVP Y LKSAA
Sbjct: 120 TAMIILASVISSTVSNALLGTQSAFTVPSYDLKSAA 155


>AT4G35440.1 | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E |
           chr4:16836384-16839345 REVERSE LENGTH=710
          Length = 710

 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 119/209 (56%), Gaps = 8/209 (3%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH++ +++W G P+ GA+WLR   +   W R++L+P  GG++V ++  L E  
Sbjct: 91  VVLFNNCVHLLRDFSWDGIPDRGASWLREAPIGSNWLRVILVPTIGGLVVSILNQLRESA 150

Query: 186 DQIKQSSHSSQRQGFDLLAGII-PTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL 244
            +    SHSS     D +  ++ P +K + A VTLGTG SLGPEGPSV+IG S A G + 
Sbjct: 151 GKSTGDSHSS----LDRVKAVLRPFLKTVAACVTLGTGNSLGPEGPSVEIGASIAKGVNS 206

Query: 245 MMENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSP---PFTTAMII 301
           +   + +                     VAGCFFA+E+VL P  + +S    P TT+M+I
Sbjct: 207 LFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFFAVESVLWPSSSTDSSTSLPNTTSMVI 266

Query: 302 LASVISSTVSNVIQGTQSAFTVPEYQLKS 330
           L++V +S VS +  G++ AF VP+Y  +S
Sbjct: 267 LSAVTASVVSEIGLGSEPAFKVPDYDFRS 295


>AT4G35440.2 | Symbols: CLC-E | chloride channel E |
           chr4:16836367-16839345 REVERSE LENGTH=749
          Length = 749

 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 119/209 (56%), Gaps = 8/209 (3%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH++ +++W G P+ GA+WLR   +   W R++L+P  GG++V ++  L E  
Sbjct: 91  VVLFNNCVHLLRDFSWDGIPDRGASWLREAPIGSNWLRVILVPTIGGLVVSILNQLRESA 150

Query: 186 DQIKQSSHSSQRQGFDLLAGII-PTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL 244
            +    SHSS     D +  ++ P +K + A VTLGTG SLGPEGPSV+IG S A G + 
Sbjct: 151 GKSTGDSHSS----LDRVKAVLRPFLKTVAACVTLGTGNSLGPEGPSVEIGASIAKGVNS 206

Query: 245 MMENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSP---PFTTAMII 301
           +   + +                     VAGCFFA+E+VL P  + +S    P TT+M+I
Sbjct: 207 LFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFFAVESVLWPSSSTDSSTSLPNTTSMVI 266

Query: 302 LASVISSTVSNVIQGTQSAFTVPEYQLKS 330
           L++V +S VS +  G++ AF VP+Y  +S
Sbjct: 267 LSAVTASVVSEIGLGSEPAFKVPDYDFRS 295