Miyakogusa Predicted Gene

Lj0g3v0293379.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0293379.1 Non Chatacterized Hit- tr|A5AF94|A5AF94_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.02,2e-18,ARID-like,ARID/BRIGHT DNA-binding domain; ARID/BRIGHT
DNA binding domain,NULL; BRIGHT, ARID (A/T-ric,CUFF.19633.1
         (585 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46040.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2 do...   280   2e-75
AT4G11400.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2 do...   252   5e-67
AT5G04110.1 | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114...   121   2e-27
AT2G03470.1 | Symbols:  | ELM2 domain-containing protein | chr2:...    94   3e-19
AT2G03470.2 | Symbols:  | ELM2 domain-containing protein | chr2:...    94   3e-19
AT1G26580.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    92   1e-18
AT1G13880.1 | Symbols:  | ELM2 domain-containing protein | chr1:...    91   2e-18

>AT2G46040.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2
           domain protein | chr2:18935684-18937807 REVERSE
           LENGTH=562
          Length = 562

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 266/527 (50%), Gaps = 53/527 (10%)

Query: 30  FEELLGEFLQALNLLRPYPPMLGDGKKVDLYKLYMVVKGKGGFEAVTNGKLWDLVGEESG 89
            +  L EF  A   L P P M G+G+ VDL+ L++ V  KGGF+AV+    WD V +ESG
Sbjct: 53  LDSFLAEFCSADGFL-PLPAMTGEGRTVDLFNLFLNVTHKGGFDAVSENGSWDEVVQESG 111

Query: 90  CGVRVGPTVKLFYGKYLSPLDTWGKKF--GDSKVVPECVLVGDRDRFGRCLMELKAEVRG 147
                  + KL Y KYL     W  +   GD+ V     L G  D     L    +EV+ 
Sbjct: 112 LESYDSASAKLIYVKYLDAFGRWLNRVVAGDTDV-SSVELSGISDALVARLNGFLSEVKK 170

Query: 148 MLDGRAAADEVDGEEVKLCGLMDESVLGNLCEGNDQMGVLEGFDGGKMSAEPEIDASDAV 207
             + R       G   K  G   +  +       D+  V      GK SA     ++DAV
Sbjct: 171 KYELRK------GRPAKELGAELKWFISKTKRRYDKHHV------GKESA-----SNDAV 213

Query: 208 NSSLPGLLSEGEKCDDGVVVLASSGGDSEKFGCKRKRQSMLDWLRWLAGVAKNPYDPAVG 267
                  L+E     + +++L S   +    G KRKR+  L+ L+WL+ VAK+P DP++G
Sbjct: 214 KEFQGSKLAERRL--EQIMILESVTQECSSPG-KRKRECPLETLKWLSDVAKDPCDPSLG 270

Query: 268 AVPEKSKWNSYSNQEFWKQVLLFREAVFFKKVFXXXXXXXXXXXXKMHPCMYDDPHEPAY 327
            VP++S+W SY ++E WKQ+LLFR +   +               KMHPC+YDD    +Y
Sbjct: 271 IVPDRSEWVSYGSEEPWKQLLLFRAS---RTNNDSACEKTWQKVQKMHPCLYDDSAGASY 327

Query: 328 NLRERQTSNNKPPSRQLTSAVRRSSKSYLRTGGESDSSSGSKTGFDGCPVLPIPLGPRNQ 387
           NLRER                  S + Y R    + S  GS    D    L   +G + Q
Sbjct: 328 NLRERL-----------------SYEDYKRGKTGNGSDIGSSDEEDRPCAL---VGSKFQ 367

Query: 388 AEVPEWTGLTSESNSKWLGTQIWPLQKVNSR--LLIERDPIGKGRQDLCGCSVPGSVECV 445
           A+VPEWTG+T ES+SKWLGT+IWPL K  ++  LLIERD IGKGRQD CGC  PGS+ECV
Sbjct: 368 AKVPEWTGITPESDSKWLGTRIWPLTKEQTKANLLIERDRIGKGRQDPCGCHNPGSIECV 427

Query: 446 RFHIAEKRAKVKLELGVAFHQWNLDKIGEDVRILWTHEEEKKFKDAVEWDPPSSEEYLGY 505
           +FHI  KR K+KLELG AF+ W  D +GE     WT  E KK K  +     S       
Sbjct: 428 KFHITAKRDKLKLELGPAFYMWCFDVMGECTLQYWTDLELKKIKSLMS----SPPSLSPA 483

Query: 506 FWDPIFKTFPQKSTADLVSYYLNVFLLQRRGHQNRHTPDDANSEDDE 552
           F        P KS   +VSY+ NV LLQ R  Q+R TP D +S+ D+
Sbjct: 484 FIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQSRITPHDIDSDTDQ 530


>AT4G11400.1 | Symbols:  | ARID/BRIGHT DNA-binding domain;ELM2
           domain protein | chr4:6938717-6940539 FORWARD LENGTH=573
          Length = 573

 Score =  252 bits (644), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 186/566 (32%), Positives = 272/566 (48%), Gaps = 71/566 (12%)

Query: 28  RRFEELLGEFLQALNLLRPYPPMLGDGKKVDLYKLYMVVKGKGGFEAVTNGKLWDLVGEE 87
           R F++ L  FL+    ++P P ++GDGK VDL+KL+++V+ + GF+ V+  +LW++V E+
Sbjct: 28  RLFDQALLVFLEEEGSIKPLPAVIGDGKNVDLFKLFVLVREREGFDTVSRKRLWEVVAEK 87

Query: 88  SGCGVRVGPTVKLFYGKYLSPLDTWGKKFGDSKVVPECVLVG--DRDR-----FGRCLME 140
            G    + P++ L Y KYL+ ++ W         V E  +V   ++D      +   L E
Sbjct: 88  LGFDCSLVPSLILIYLKYLNRMEKWA--------VEESRIVNWDNKDSEKKGCYSGMLHE 139

Query: 141 LKAEVRGMLDGRAAADEVDGEEVKLCGLMDESVLGNLCEGNDQMGVLEGFDGGKMSAEPE 200
           L    + +LD      + +      C  M+ES                 FD  +      
Sbjct: 140 LGNGFKSLLDN-GKCQKRNRAVAFGCNHMEESC--------------SEFDRSRKRFRES 184

Query: 201 IDASDAVNSSLPGLLSEGEKCDDGVVVLASSGGDSEKFGCKRKRQSMLDWLRWLAGVAKN 260
            D    V  S   +  E        VV A   G S+ F  + KR  +   L+WLA VA +
Sbjct: 185 DDDDKGVGLSSVVIREE-------TVVCAVEEGLSD-FSLE-KRDDLPGMLKWLALVATS 235

Query: 261 PYDPAVGAVPEKSKWNSYSNQEFWKQVLLFREAVFFKK---VFXXXXXXXXXXXXKMHPC 317
           P+DPA+G +P  SKW  Y+  + W QV   + ++  ++                   HP 
Sbjct: 236 PHDPAIGVIPHSSKWKQYNGNKCWLQVARAKNSLLVQRDNAELRYRYHPFRGHQNIHHPS 295

Query: 318 MYDDPHEPA----YNLRERQTSNNKPPSRQLTSAVRRSSKSYL------------RTGGE 361
           MY+D  +      Y++R    S +   S    S++   SKS              R G  
Sbjct: 296 MYEDDRKSIGRLRYSIRPPNLSKHCSSSCCNGSSLVSLSKSRSTKCRKLTIIASERAGLT 355

Query: 362 SDSSSGSKTGFDGCPVLPIPLGPRNQAEVPEWTGLTSESNSKWLGTQIWPLQKVNSRLL- 420
           + +S   K      P   I +G ++QA+V EWT    +S+SKWLGT+IWP +  NS  L 
Sbjct: 356 AGTSRARKRNKAEIPRRCIKVGHQHQAQVDEWTESGVDSDSKWLGTRIWPPE--NSEALD 413

Query: 421 --IERDPIGKGRQDLCGCSVPGSVECVRFHIAEKRAKVKLELGVAFHQWNLDKIGEDVRI 478
             +  D +GKGR D C C + G VEC R HIAEKR ++K ELG  F  W  +++GE+V +
Sbjct: 414 QTLGNDLVGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFFHWRFNQMGEEVCL 473

Query: 479 LWTHEEEKKFKDAVEWDPPSSEEYLGYFWDPIFKTFPQKSTADLVSYYLNVFLLQRRGHQ 538
            WT EEEK+FKD +  DP S       FW    K FP+K   +LVSYY NVFL+ RR +Q
Sbjct: 474 RWTEEEEKRFKDMIIADPQS-------FWTNAAKNFPKKKREELVSYYFNVFLINRRRYQ 526

Query: 539 NRHTPDDANSEDDESQEPRLRSGFGR 564
           NR TP   +S DDE     +   FGR
Sbjct: 527 NRVTPKSIDS-DDEGAFGSVGGSFGR 551


>AT5G04110.1 | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114112
           REVERSE LENGTH=546
          Length = 546

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 16/166 (9%)

Query: 380 IPLGPRNQAEVPEWTGLTS---------ESNS-KWLGTQIWPLQKVNSRLLIERDPIGKG 429
           IP+GPR QAE+P W   T          +SN+ +WLGT +WP   +  +  +    +G+G
Sbjct: 361 IPIGPRFQAEIPVWIAPTKKGKFYGSPGDSNTLRWLGTGVWPTYSL--KKTVHSKKVGEG 418

Query: 430 RQDLCGCSVPGSVECVRFHIAEKRAKVKLELGVAFHQWNLDKIGEDVRI-LWTHEEEKKF 488
           R D C C+ P S  C++ H  E +  ++ E+  AF  W  D++GE++ +  WT +EE++F
Sbjct: 419 RSDSCSCASPRSTNCIKRHKKEAQELLEKEINRAFSTWEFDQMGEEIVLKSWTAKEERRF 478

Query: 489 KDAVEWDPPSSEEYLGYFWDPIFKTFPQKSTADLVSYYLNVFLLQR 534
           +  V+ +P SS +    FW+     FPQKS  DL+SYY NVFL++R
Sbjct: 479 EALVKKNPLSSSD---GFWEFASNAFPQKSKKDLLSYYYNVFLIKR 521


>AT2G03470.1 | Symbols:  | ELM2 domain-containing protein |
           chr2:1045694-1047130 REVERSE LENGTH=450
          Length = 450

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 7/183 (3%)

Query: 376 PVLPIPLGPRNQAEVPEWTG--LTSESNSKWLGTQIWPLQKVNSRLLIERDPIGKGR-QD 432
           P   + +G  +QA++PE+    +  +S ++        L +     + + D  G G+ + 
Sbjct: 119 PRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMRKCVIPMSDSDLCGTGQGRK 178

Query: 433 LCGCSVPGSVECVRFHIAEKRAKVKLELGVA-FHQWNLDKIGEDVRILWTHEEEKKFKDA 491
            C C   GS+ CVR HI E R  +   +G   F +  L ++GE+V  LWT EEE  F   
Sbjct: 179 ECLCLDKGSIRCVRRHIIEARESLVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKV 238

Query: 492 VEWDPPSSEEYLGYFWDPIFKTFPQKSTADLVSYYLNVFLLQRRGHQNRHTPDDANSEDD 551
           V  +P S+      FW  +  TFP ++  +LVSYY NVF+L+RRG QNR    D +S+DD
Sbjct: 239 VYSNPFSAGRD---FWKQLKGTFPSRTMKELVSYYFNVFILRRRGIQNRFKALDVDSDDD 295

Query: 552 ESQ 554
           E Q
Sbjct: 296 EWQ 298


>AT2G03470.2 | Symbols:  | ELM2 domain-containing protein |
           chr2:1045694-1047130 REVERSE LENGTH=449
          Length = 449

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 7/183 (3%)

Query: 376 PVLPIPLGPRNQAEVPEWTG--LTSESNSKWLGTQIWPLQKVNSRLLIERDPIGKGR-QD 432
           P   + +G  +QA++PE+    +  +S ++        L +     + + D  G G+ + 
Sbjct: 118 PRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMRKCVIPMSDSDLCGTGQGRK 177

Query: 433 LCGCSVPGSVECVRFHIAEKRAKVKLELGVA-FHQWNLDKIGEDVRILWTHEEEKKFKDA 491
            C C   GS+ CVR HI E R  +   +G   F +  L ++GE+V  LWT EEE  F   
Sbjct: 178 ECLCLDKGSIRCVRRHIIEARESLVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKV 237

Query: 492 VEWDPPSSEEYLGYFWDPIFKTFPQKSTADLVSYYLNVFLLQRRGHQNRHTPDDANSEDD 551
           V  +P S+      FW  +  TFP ++  +LVSYY NVF+L+RRG QNR    D +S+DD
Sbjct: 238 VYSNPFSAGRD---FWKQLKGTFPSRTMKELVSYYFNVFILRRRGIQNRFKALDVDSDDD 294

Query: 552 ESQ 554
           E Q
Sbjct: 295 EWQ 297


>AT1G26580.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; BEST
           Arabidopsis thaliana protein match is: ELM2
           domain-containing protein (TAIR:AT2G03470.1); Has 161
           Blast hits to 161 proteins in 17 species: Archae - 0;
           Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:9185620-9187213 FORWARD LENGTH=493
          Length = 493

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 25/192 (13%)

Query: 380 IPLGPRNQAEVPEW----------TGLTSESN-------SKWLGTQIWPLQKVNSRLLIE 422
           +P+GP +QAE+PEW          +G++ +++        K  GT + P+  + +   I+
Sbjct: 135 VPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISGCADGEKLFGTSVIPMPGLTTVAHID 194

Query: 423 RDPIGKGRQDLCGCSVPGSVECVRFHIAEKRAKVKLELG-VAFHQWNLDKIGEDVRILWT 481
            D +GKGR+  C C    SV CV  HI E R ++    G   F +  L ++GE   + W+
Sbjct: 195 -DIVGKGRK-FCVCRDRDSVRCVCQHIKEAREELVKTFGNETFKELGLCEMGEKGALKWS 252

Query: 482 HEEEKKFKDAVEWDPPSSEEYLGY-FWDPIFKTFPQKSTADLVSYYLNVFLLQRRGHQNR 540
            E+ + F + V  +P +    LG  FW  +   F  ++  ++VS+Y NVF+L+RR  QNR
Sbjct: 253 DEDAQLFHEVVYSNPVT----LGQNFWRHLEAAFCSRTQKEIVSFYFNVFVLRRRAIQNR 308

Query: 541 HTPDDANSEDDE 552
               D +S+DDE
Sbjct: 309 AFILDIDSDDDE 320


>AT1G13880.1 | Symbols:  | ELM2 domain-containing protein |
           chr1:4749603-4750967 FORWARD LENGTH=424
          Length = 424

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 18/212 (8%)

Query: 366 SGSKTGFDGCPVLP---IPLGPRNQAEVPEWTGLTSESNSKWLGTQIWPLQKVNSRLLI- 421
           SG + G+  CP+ P   +P+G   QA++PE   +  E+N +      +  ++V  + +I 
Sbjct: 112 SGEEDGY-WCPISPRKTVPIGSDYQADIPE--CVKEEANDQSGQGVGYDEEQVTGKCVIP 168

Query: 422 ------ERDPIGKGRQDLCGCSVPGSVECVRFHIAEKRAKVKLELGV-AFHQWNLDKIGE 474
                 E   IGKGR++ C C   GS+ CV+ HI E R  +   +G        L ++GE
Sbjct: 169 MPDCETEVCKIGKGRKE-CICLDKGSIRCVQQHIMENREDLFATIGYDRCLDIGLCEMGE 227

Query: 475 DVRILWTHEEEKKFKDAVEWDPPSSEEYLGYFWDPIFKTFPQKSTADLVSYYLNVFLLQR 534
           +V    T +EE  F + V  +P S +     FW  +   FP ++  ++VSYY NVF+L+R
Sbjct: 228 EVAARLTEDEEDLFHEIVYSNPVSMDRD---FWKHLKSAFPSRTMKEIVSYYFNVFILRR 284

Query: 535 RGHQNRHTPDDANSEDDESQEPRLRSGFGRKS 566
           R  QNR    D +S+DDE Q     + +G ++
Sbjct: 285 RAIQNRSKSLDVDSDDDEWQVEYDNTFYGAET 316