Miyakogusa Predicted Gene

Lj0g3v0293169.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0293169.3 tr|G7J5F6|G7J5F6_MEDTR Serine/threonine protein
kinase ATM OS=Medicago truncatula GN=MTR_3g077770
PE,76.56,0,seg,NULL,CUFF.19621.3
         (575 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48190.1 | Symbols: ATM, ATATM | ataxia-telangiectasia mutate...   613   e-176

>AT3G48190.1 | Symbols: ATM, ATATM | ataxia-telangiectasia mutated |
            chr3:17797628-17828361 FORWARD LENGTH=3845
          Length = 3845

 Score =  613 bits (1581), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/527 (57%), Positives = 389/527 (73%), Gaps = 2/527 (0%)

Query: 25   EEGIKLLNTWLEGERSYNFCEFIGLNTAKLRANEVPHSETWPFLISLLIQCVSSEISSSK 84
            ++G+KLLNTWLEGERS  FC F+  NTAKL+ +E+P++ETWPFL+ LL+QCVS E+S SK
Sbjct: 836  KDGVKLLNTWLEGERSITFCRFLSQNTAKLKLDEIPNAETWPFLVKLLLQCVSMEVSGSK 895

Query: 85   RRNPKMTYAKTLRVVVQRAEDAKYSGKMLPLSSVVKPLFNHVWDVLSNVPSFQSEYGIIL 144
            RR PK T+AKTLRVVVQR E+ K+ G   PL S+ K LF HV D+LSN PSFQSEYG IL
Sbjct: 896  RRMPKPTFAKTLRVVVQRTEETKFPGVQFPLLSMAKTLFTHVHDILSNTPSFQSEYGTIL 955

Query: 145  RHLLAVKDYSLQMRKRIYCSLVILYMEKVEASLNGKNISHCTSKEEVFRFILTLHSLLDY 204
            RHLL +K+Y  QMRKR Y SLV+LYME+ E     KN    + KEE FR+ILTL SLL+ 
Sbjct: 956  RHLLEIKEYRFQMRKRTYSSLVLLYMERAETGFCEKNSGQHSQKEEAFRYILTLQSLLEN 1015

Query: 205  PPGDYPDNLREDIVQGFVRICSFIREDGKISRKLIECINTYLLNDGPNLGFQLLEIHNAI 264
             PGD+PD+LRE+IV G + I S +R++GK+SRKLIEC+NT+LL DGPNLG   LEIHNA+
Sbjct: 1016 SPGDFPDDLREEIVNGLIHIFSSVRDEGKLSRKLIECVNTFLLKDGPNLGSLSLEIHNAV 1075

Query: 265  EQFLFRCWLTTHDRVLKDSLMFYARIQLNLVRGAGDKCLLVEQLLDVIYKDLDQGSMSST 324
            EQF+FRCWLTTHD+ LK+ L+ Y R+QLNL R + +   LVEQLLDV+ ++LD GS SS+
Sbjct: 1076 EQFVFRCWLTTHDKNLKEILVSYGRLQLNLTRDSSESSSLVEQLLDVVTRELDLGSSSSS 1135

Query: 325  SITRGDGQKDDKLGVLSSSQCGLVELAAVLFFKACLNTTKASLSEKRVKREPAAMVLREA 384
            + + GD  KD+KLG LSS Q  LVELAA +F++AC+NT++ SLSEKR +R+  AM + +A
Sbjct: 1136 A-SWGDTTKDEKLGALSSYQNSLVELAAHVFYRACVNTSRPSLSEKRARRQHIAMRMVDA 1194

Query: 385  LMKGKWLWIAAFCYLIRNYYSRIGKDLCLYWFEGICMSFDRVLNTANVDRAYDGLLWTLR 444
            L +GKWLW AAF  L+RNY +RI  DL +YWFE IC +F R+L  A++ R+YDGLLWTLR
Sbjct: 1195 LTEGKWLWCAAFGCLVRNYCARINMDLLIYWFEAICTNFQRLLEDASMRRSYDGLLWTLR 1254

Query: 445  SLQELSSVLLLPNSMMEISSMPSSTLNEFINGWQLLWSTIVHGLPIFSNITXXXXXXXXX 504
            SLQ LSS L LP+  M+IS   S++ +E   GWQ +WS+++HGL  FS+++         
Sbjct: 1255 SLQGLSSGLSLPDITMDISKS-SASSSELDRGWQSIWSSLIHGLATFSSMSVIVDAVLVL 1313

Query: 505  XXNITSNELVNTCLIPQDVWDLQFFKRPTSIPILYFFSCYFSRKNSQ 551
              +I S+  +   ++PQ+VWD Q F+   S P LYF +CYFSR   Q
Sbjct: 1314 LGSIISSNHITVKILPQEVWDHQLFRHIPSEPALYFIACYFSRMGCQ 1360