Miyakogusa Predicted Gene

Lj0g3v0292979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0292979.1 Non Chatacterized Hit- tr|J7S6C9|J7S6C9_KAZNA
Uncharacterized protein OS=Kazachstania naganishii
(st,55.17,2e-19,Ribosomal_S4,Ribosomal protein S4/S9, N-terminal; U3
SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3,,CUFF.19596.1
         (89 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15750.1 | Symbols:  | Alpha-L RNA-binding motif/Ribosomal pr...   149   4e-37

>AT5G15750.1 | Symbols:  | Alpha-L RNA-binding motif/Ribosomal
          protein S4 family protein | chr5:5141449-5142701
          FORWARD LENGTH=182
          Length = 182

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 76/89 (85%)

Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNIL 60
          MRKLK+HE+KL+KKVNFLEWKREG HREN +  RYH+  RDDYKKYS LC MVQKL NI+
Sbjct: 1  MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61 KQMDPKDPVRVDMTDKLLEKLYNMGVIPT 89
          KQMDP DP R+ MTD LLEKLYNMGVIPT
Sbjct: 61 KQMDPADPFRIQMTDMLLEKLYNMGVIPT 89