Miyakogusa Predicted Gene

Lj0g3v0292459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0292459.1 Non Chatacterized Hit- tr|F6HR57|F6HR57_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,89.83,0,coiled-coil,NULL; TRANSCRIPTION FACTOR DP,Transcription
factor DP; E2F_TDP,Transcription factor E2F/,CUFF.19555.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03415.1 | Symbols: DPB, ATDPB | Transcription factor DP | ch...   218   7e-58
AT5G03415.2 | Symbols: DPB | Transcription factor DP | chr5:8428...   212   4e-56
AT5G02470.3 | Symbols: DPA | Transcription factor DP | chr5:5425...   125   6e-30
AT5G02470.2 | Symbols: DPA | Transcription factor DP | chr5:5425...   125   6e-30
AT5G02470.1 | Symbols: DPA | Transcription factor DP | chr5:5425...   125   6e-30

>AT5G03415.1 | Symbols: DPB, ATDPB | Transcription factor DP |
           chr5:842842-845200 FORWARD LENGTH=385
          Length = 385

 Score =  218 bits (554), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/118 (88%), Positives = 110/118 (93%)

Query: 1   MKVCEKVESKGRTTYNEVADELVAEFADPSNSTLSPDQQQYDEKNIRRRVYDALNVLMAM 60
           MKVCEKVESKGRTTYNEVADELVAEFA P+N   SPDQQQYDEKNIRRRVYDALNVLMAM
Sbjct: 109 MKVCEKVESKGRTTYNEVADELVAEFALPNNDGTSPDQQQYDEKNIRRRVYDALNVLMAM 168

Query: 61  DIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKRAYLQELEDQYIGLQNLI 118
           DIISKDKKEIQW+GLPRTSL+DIEELK ERL LRNRIEKK AY QELE+QY+GLQNLI
Sbjct: 169 DIISKDKKEIQWRGLPRTSLSDIEELKNERLSLRNRIEKKTAYSQELEEQYVGLQNLI 226


>AT5G03415.2 | Symbols: DPB | Transcription factor DP |
           chr5:842842-845200 FORWARD LENGTH=379
          Length = 379

 Score =  212 bits (539), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/116 (87%), Positives = 108/116 (93%)

Query: 3   VCEKVESKGRTTYNEVADELVAEFADPSNSTLSPDQQQYDEKNIRRRVYDALNVLMAMDI 62
           +CEKVESKGRTTYNEVADELVAEFA P+N   SPDQQQYDEKNIRRRVYDALNVLMAMDI
Sbjct: 105 LCEKVESKGRTTYNEVADELVAEFALPNNDGTSPDQQQYDEKNIRRRVYDALNVLMAMDI 164

Query: 63  ISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKRAYLQELEDQYIGLQNLI 118
           ISKDKKEIQW+GLPRTSL+DIEELK ERL LRNRIEKK AY QELE+QY+GLQNLI
Sbjct: 165 ISKDKKEIQWRGLPRTSLSDIEELKNERLSLRNRIEKKTAYSQELEEQYVGLQNLI 220


>AT5G02470.3 | Symbols: DPA | Transcription factor DP |
           chr5:542562-544423 REVERSE LENGTH=292
          Length = 292

 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 3   VCEKVESKGRTTYNEVADELVAEFADPSNSTLSP-DQQQYDEKNIRRRVYDALNVLMAMD 61
           VC+K+E+K  TTY EVADE++++FA    +   P ++ +Y+EKNIRRRVYDALNV MA+D
Sbjct: 61  VCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEYNEKNIRRRVYDALNVFMALD 120

Query: 62  IISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKRAYLQELEDQYIGLQNLI 118
           II++DKKEI+WKGLP T   D+EE+K +R  + + ++KK A+L+EL ++   L++L+
Sbjct: 121 IIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREKVSSLESLM 177


>AT5G02470.2 | Symbols: DPA | Transcription factor DP |
           chr5:542562-544423 REVERSE LENGTH=292
          Length = 292

 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 3   VCEKVESKGRTTYNEVADELVAEFADPSNSTLSP-DQQQYDEKNIRRRVYDALNVLMAMD 61
           VC+K+E+K  TTY EVADE++++FA    +   P ++ +Y+EKNIRRRVYDALNV MA+D
Sbjct: 61  VCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEYNEKNIRRRVYDALNVFMALD 120

Query: 62  IISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKRAYLQELEDQYIGLQNLI 118
           II++DKKEI+WKGLP T   D+EE+K +R  + + ++KK A+L+EL ++   L++L+
Sbjct: 121 IIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREKVSSLESLM 177


>AT5G02470.1 | Symbols: DPA | Transcription factor DP |
           chr5:542562-544423 REVERSE LENGTH=292
          Length = 292

 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 3   VCEKVESKGRTTYNEVADELVAEFADPSNSTLSP-DQQQYDEKNIRRRVYDALNVLMAMD 61
           VC+K+E+K  TTY EVADE++++FA    +   P ++ +Y+EKNIRRRVYDALNV MA+D
Sbjct: 61  VCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEYNEKNIRRRVYDALNVFMALD 120

Query: 62  IISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKRAYLQELEDQYIGLQNLI 118
           II++DKKEI+WKGLP T   D+EE+K +R  + + ++KK A+L+EL ++   L++L+
Sbjct: 121 IIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREKVSSLESLM 177