Miyakogusa Predicted Gene
- Lj0g3v0292129.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0292129.2 Non Chatacterized Hit- tr|I1Q778|I1Q778_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,44,3e-18,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.19523.2
(595 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 721 0.0
AT4G12680.1 | Symbols: | unknown protein; INVOLVED IN: vegetati... 412 e-115
AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 404 e-112
AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma me... 401 e-112
>AT4G37030.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G12680.1); Has 101 Blast hits
to 99 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr4:17452150-17454629 FORWARD LENGTH=569
Length = 569
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/544 (62%), Positives = 425/544 (78%), Gaps = 11/544 (2%)
Query: 11 MKASYVVFAFISAMFLGVMKGIVVGPIAAXXXXXXXXXXXXXMFPAHVAWTVYTLLKIQM 70
+K SYV+FAF SA FLG +KG++VGPIA +FPAHV WT+Y + K
Sbjct: 12 LKISYVIFAFCSAFFLGAIKGLIVGPIAGLTLIVGNVGVILCLFPAHVTWTIYAVAKTNR 71
Query: 71 FDVALKVAILIALPALFGLWLQLGIAGSILVGVGYGFFTPLVSTFEAFRHGSESKRFLHC 130
FD+ LKVAIL+ALPALFG+WL L +A S+LVGVGYGFFTP +S FEAFR +ES +F HC
Sbjct: 72 FDIPLKVAILVALPALFGIWLGLSLAISVLVGVGYGFFTPWISAFEAFRQDTESNKFFHC 131
Query: 131 ITDGTWGTIKGCCTVVRDFADVCCHSYPCYLRELRESPASNEQKKLRLIHVPACIIVGIM 190
+ DGTWGTIKG C VV DFAD C HSYP YL+ELRESP S+E + LRLIHVP CIIVGI+
Sbjct: 132 LVDGTWGTIKGSCIVVTDFADFCYHSYPLYLKELRESPVSDELQTLRLIHVPGCIIVGIL 191
Query: 191 GIVLEIPLFTAIAIVKSPYLLFKGWFRLVHDLISREGPFLETACIPIAGLTIFVWPLIVI 250
G+V++IPLFTAIA++KSPYLL KGW+RL D I+REGPFLE ACIP+AGLT+ +WP++VI
Sbjct: 192 GLVIDIPLFTAIAVIKSPYLLLKGWYRLAQDAINREGPFLEIACIPVAGLTVLLWPIVVI 251
Query: 251 GSVLLAIFSSIFVGLYASIVVYQERSFRRGLAYIIAMVAEFDEYTNDWLYLREGTFFPKP 310
G +L+ IFSSIFVGLY ++VV+QERSFRRG++Y+IA+V EFDEYTNDWLYLREGT FPKP
Sbjct: 252 GFILVTIFSSIFVGLYGAVVVFQERSFRRGVSYVIAVVGEFDEYTNDWLYLREGTIFPKP 311
Query: 311 QYRKNMVTQSSDFS--------TRGNSVRLGTSMEPPAMFMPSLAPSRSVRETIQEVKMV 362
+YR + SS+ S TR NS S++ PAM +PSL S SVRE IQEV+MV
Sbjct: 312 RYRMGRGSFSSEVSVIVHPSDVTRVNS---SGSVDAPAMLVPSLVHSVSVREAIQEVRMV 368
Query: 363 QIWGNMMRYCEMRGKELLDTNVLTADDLYEWLRGKNINEAAIVGIGLPCYALLQTLLFSI 422
QIW +MM + EM+GKELLD VLT DLYE L+G++ NE++I+ +GLP YALL TLL SI
Sbjct: 369 QIWEHMMGWFEMQGKELLDAEVLTPTDLYESLKGRHGNESSIINVGLPSYALLHTLLSSI 428
Query: 423 KANSSGVLLLDDFEITYFNRPKDKLLDWFFNPVMVLKEQIRVIELVDAEVRYLEKVILFG 482
KA GVLLLD E+T+ NRP+DK LDW FNP+MVLK+QIR ++L ++EV+YLEKV+LFG
Sbjct: 429 KAGVHGVLLLDGSEVTHLNRPQDKFLDWVFNPIMVLKDQIRALKLGESEVKYLEKVVLFG 488
Query: 483 SNKQRLDAWDNGGLAITDTLRAAQIEGLSRRMIGMTRSVTKLPTYRRKFRHIVKALVCHS 542
+++QR++AWDN + LR AQI+G+SRRM+GM RSV+KLPTYRR+FR +VKAL+ +
Sbjct: 489 NHEQRMEAWDNHSNPPQENLRTAQIQGISRRMMGMVRSVSKLPTYRRRFRQVVKALITYY 548
Query: 543 VEKD 546
EK
Sbjct: 549 SEKQ 552
>AT4G12680.1 | Symbols: | unknown protein; INVOLVED IN: vegetative
to reproductive phase transition of meristem; LOCATED
IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G40640.1);
Has 103 Blast hits to 103 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:7475104-7478174 FORWARD LENGTH=575
Length = 575
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/536 (40%), Positives = 329/536 (61%), Gaps = 23/536 (4%)
Query: 27 GVMKGIVVGPIAAXXXXXXXXXXXXXMFPAHVAWTVYTLLKIQMFDVALKVAILIALPAL 86
GV K +++GPI++ ++PAH WT Y L + + + LK L+ P
Sbjct: 28 GVTKALIIGPISSAIILVGNSCVIIGLWPAHFIWTYYCLARTKRIGLVLKTLALVLFPLP 87
Query: 87 FGLWLQLGIAGSILVGVGYGFFTPLVSTFEAFRHGSESKRFLHCITDGTWGTIKGCCTVV 146
LW GI GS+ G+ YGFFTPL++TFEA SK + HC DG++ TIKG CTVV
Sbjct: 88 LLLWPVAGIVGSLFGGIAYGFFTPLMATFEAVGESVTSKCY-HCFVDGSFSTIKGSCTVV 146
Query: 147 RDFADVCCHSYPCYLRELRESPASN-EQKKLRLIHVPACIIVGIMGIVLEIPLFTAIAIV 205
DF D C HSY Y+ ELRE +++ E +++L +P+C++ ++G+++++ L TA+A+
Sbjct: 147 TDFTDFCFHSYFSYMDELREMVSADVEPLEIKLSRLPSCLLASLIGVMVDVLLITAVAVY 206
Query: 206 KSPYLLFKGWFRLVHDLISREGPFLETACIPIAGLTIFVWPLIVIGSVLLAIFSSIFVGL 265
KSPY+L KGW RL+ DL+ REGPFLE+ C+P AGL I +WPL V G+V+ ++ SS F+GL
Sbjct: 207 KSPYMLLKGWKRLLEDLVGREGPFLESVCVPFAGLAILLWPLAVAGAVIASVLSSFFLGL 266
Query: 266 YASIVVYQERSFRRGLAYIIAMVAEFDEYTNDWLYLREGTFFPKPQYR--------KNMV 317
Y+ ++V+QE SFR GL YIIA V+ FDEY ND LYLREGT P+P YR K ++
Sbjct: 267 YSGVIVHQEDSFRMGLNYIIAAVSLFDEYVNDLLYLREGTSLPRPCYRTKTETVHGKRIL 326
Query: 318 TQSSDFSTRGN-SVRLGTSMEPPAMFMPSLAPSRSVRETIQEVKMVQIWGNMMRYCEMRG 376
+S + + S LG+ + SR++++ I K VQ+W + + CE+ G
Sbjct: 327 GESKNVDLKSKRSSSLGSKLVSEQ--------SRTLKKAITLYKPVQVWEWLFKSCEVNG 378
Query: 377 KELLDTNVLTADDLYEWLRGKNINEAAIVGIGLPCYALLQTLLFSIKANSSGVLLLDDFE 436
+ LL ++ D+ E L N + + I LP + +LQ LL S K+NSSG+++ D E
Sbjct: 379 RILLRDGLIDVKDVEECLVKGNSKK---LYIKLPAWTVLQCLLASAKSNSSGLVITDGVE 435
Query: 437 ITYFNRPKDKLLDWFFNPVMVLKEQIRVIELVDAEVRYLEKVILFGSNKQRLDAWDNGGL 496
+T N P+DK+ W P++++KEQI+ ++L + E L K+++ N +R + WDN G
Sbjct: 436 LTELNSPRDKVFVWLVGPLLIMKEQIKNLKLTEDEEFCLRKLVMVCKN-ERTEDWDNTGF 494
Query: 497 AITDTLRAAQIEGLSRRMIGMTRSVTKLPTYRRKFRHIVKALVCHSVEKDVPGGEA 552
+DT+R AQ++ + RR+ GM S++++PT+RR+F ++VK L ++E G A
Sbjct: 495 PSSDTVRKAQLQAIIRRLQGMVASMSRIPTFRRRFMNLVKVLYIEALEMGASGNRA 550
>AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast
hits to 99 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:10133372-10136111 REVERSE LENGTH=588
Length = 588
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/522 (40%), Positives = 318/522 (60%), Gaps = 17/522 (3%)
Query: 20 FISAMFLGVMKGIVVGPIAAXXXXXXXXXXXXXMFPAHVAWTVYTLLKIQMFDVALKVAI 79
FI +FLG +KGIV+ P+ + P H+ WT Y+++ + LK+ +
Sbjct: 21 FIGLLFLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIVWTFYSIVSAKQVGPILKIFL 80
Query: 80 LIALPALFGLWLQLGIAGSILVGVGYGFFTPLVSTFEAFRHGSESKRFLHCITDGTWGTI 139
+ LPA LW +GI GS+L G YGFF+P+ +TF+A G + +F HC DGTW T+
Sbjct: 81 CLCLPAAIILWPIVGILGSVLGGALYGFFSPIFATFDAVGEG-KPYQFFHCFYDGTWSTM 139
Query: 140 KGCCTVVRDFADVCCHSYPCYLRELRESPASNEQKKLRLIHVPACIIVGIMGIVLEIPLF 199
+ TVVRDF DVC HSY + EL++S + ++RL+ +P ++V ++GI+++ P+
Sbjct: 140 QRSFTVVRDFKDVCFHSYFSLMDELKQSCPDRKYYEIRLLQLPGALVVSVLGILVDPPVI 199
Query: 200 TAIAIVKSPYLLFKGWFRLVHDLISREGPFLETACIPIAGLTIFVWPLIVIGSVLLAIFS 259
+ +AI KSPY+LFKGW RL HDLI REGPFLET C+PIAGL I +WPL V G+V+ ++ S
Sbjct: 200 SLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVIS 259
Query: 260 SIFVGLYASIVVYQERSFRRGLAYIIAMVAEFDEYTNDWLYLREGTFFPKPQYRKNMVTQ 319
SIF+G YA +V YQE SF GL YI+A V+ +DEY+ D L L EG+ FP+P+YR+ +
Sbjct: 260 SIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKD-EE 318
Query: 320 SSDFSTRGNSVRLGTSMEPPAMFMPSLAPSRSVRETIQEVKMVQIWGNMMRYCEMRGKEL 379
+ FS G RLG+ +M SVR + ++K + + + C G+ L
Sbjct: 319 PTPFS--GPVPRLGSVKNASSM------RGGSVRVPMIDIKPLDLLNELFVECRRYGEVL 370
Query: 380 LDTNVLTADDLYEWLRGKNINEAAIVGIGLPCYALLQTLLFSIKANSSGVLLLDDF-EIT 438
++ + D+ E K + ++ +GLP Y LL +L S+KANSSG+LL D EIT
Sbjct: 371 ATKGLINSKDIEEARSSKG---SQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEIT 427
Query: 439 YFNRPKDKLLDWFFNPVMVLKEQIRVIELVDAEVRYLEKVILFGSNKQRLDAWD--NGGL 496
NRPKD DWF NP ++LKEQ++ L + E YL +++L + +RL + + +
Sbjct: 428 TMNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERLKSSNAISASP 487
Query: 497 AITDTLRAAQIEGLSRRMIGMTRSVTKLPTYRRKFRHIVKAL 538
+T+ R A+++ +RRM G+T++V++ PT+RR F +VK L
Sbjct: 488 PLTERKR-AELDAFARRMQGLTKTVSRYPTFRRHFVALVKKL 528
>AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27390.1);
Has 104 Blast hits to 102 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
| chr5:16277345-16280258 FORWARD LENGTH=586
Length = 586
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/527 (39%), Positives = 318/527 (60%), Gaps = 27/527 (5%)
Query: 20 FISAMFLGVMKGIVVGPIAAXXXXXXXXXXXXXMFPAHVAWTVYTLLKIQMFDVALKVAI 79
F + LGV+KGIV+ P+ + P H WT+Y++ + LK+ +
Sbjct: 21 FTGLLLLGVIKGIVLCPLICLTVAIGNSAIILGLLPVHAIWTLYSIASAKQLGPILKIFL 80
Query: 80 LIALPALFGLWLQLGIAGSILVGVGYGFFTPLVSTFEAFRHGSESKRFLHCITDGTWGTI 139
+ +P LWL + I GS+L G YGF +P+ +TF+A G +S F HC DGTW T+
Sbjct: 81 CLCVPLGVILWLVVSILGSVLGGAIYGFLSPIFATFDAVGEG-KSNPFFHCFYDGTWSTV 139
Query: 140 KGCCTVVRDFADVCCHSYPCYLRELRESPASNEQKKLRLIHVPACIIVGIMGIVLEIPLF 199
+G TVV DF DVC HSY ++ +LR S A+ ++RL+ +P +IV ++GI+++ P+
Sbjct: 140 QGSFTVVCDFKDVCFHSYFSFMDDLRTSTANRHYYEIRLLQIPGAVIVAVLGILVDFPVI 199
Query: 200 TAIAIVKSPYLLFKGWFRLVHDLISREGPFLETACIPIAGLTIFVWPLIVIGSVLLAIFS 259
+ +A+ KSPY+LFKGW RL HDLI REGPFLET C+PIAGL I +WPL V+G+VL ++ S
Sbjct: 200 SLLALCKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLVILLWPLAVVGAVLGSVVS 259
Query: 260 SIFVGLYASIVVYQERSFRRGLAYIIAMVAEFDEYTNDWLYLREGTFFPKPQYRKNMVTQ 319
S+F+G Y +V YQE SF GL Y++A V+ +DEY+ND L + EG+ FP+P YR+N
Sbjct: 260 SVFLGAYGGVVSYQESSFFFGLCYVVASVSIYDEYSNDVLDMPEGSCFPRPIYRRNEEGA 319
Query: 320 SSDFS---TRGNSVRLGTSMEPPAMFMPSLAPSR--SVRETIQEVKMVQIWGNMMRYCEM 374
S+ FS +R NS + PSR S + + ++K + + + C
Sbjct: 320 STAFSGGLSRPNSFK--------------TTPSRGGSNKGPMIDLKPLDLLEALFVECRR 365
Query: 375 RGKELLDTNVLTADDLYEWLRGKNINEAAIVGIGLPCYALLQTLLFSIKANSSGVLLLDD 434
G+ ++ ++ + D+ E K+ + ++ GLP Y+LL LL SIK+NS+G+LL D
Sbjct: 366 HGEIMVTKGIINSKDIEE---AKSSKGSQVISFGLPAYSLLHELLRSIKSNSTGLLLGDG 422
Query: 435 F-EITYFNRPKDKLLDWFFNPVMVLKEQIRVIELVDAEVRYLEKVILFGSNKQRLDAW-- 491
EIT NRPKD DWF NP ++LK+QI L + E YL K++L + +RL +
Sbjct: 423 VTEITTRNRPKDAFFDWFLNPFLILKDQIEAANLSEEEEEYLGKLVLLFGDSERLKSSIV 482
Query: 492 DNGGLAITDTLRAAQIEGLSRRMIGMTRSVTKLPTYRRKFRHIVKAL 538
++ +T+ LR A+++ +RR+ G+T+SV++ PT+RR F +VK L
Sbjct: 483 ESESPPLTE-LRKAELDAFARRLQGLTKSVSRYPTFRRHFVELVKKL 528