Miyakogusa Predicted Gene

Lj0g3v0292029.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0292029.2 Non Chatacterized Hit- tr|C0PB35|C0PB35_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,65.15,8e-17,TRANSCRIPTION ELONGATION FACTOR-RELATED,NULL;
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3,NULL; ,CUFF.19515.2
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09850.1 | Symbols:  | Transcription elongation factor (TFIIS...   176   1e-44
AT5G05140.1 | Symbols:  | Transcription elongation factor (TFIIS...    62   3e-10
AT3G10820.2 | Symbols:  | Transcription elongation factor (TFIIS...    56   1e-08
AT3G10820.1 | Symbols:  | Transcription elongation factor (TFIIS...    55   3e-08

>AT5G09850.1 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr5:3063488-3065221 REVERSE LENGTH=353
          Length = 353

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 120/195 (61%), Gaps = 4/195 (2%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           MD+TFQAL+ETDIGRHVNR+RKH SN VRRL K LV+KWKE VDEWVKF  PG+    S+
Sbjct: 154 MDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSL 213

Query: 61  MGDEDSPQQKTPQNGY-HQIPDFSCSPNPHNG-SFGLEGNNSVXXXXXXXXXXXXXXXXX 118
           + DEDSP QK   NG   Q+PDF  SP P NG S   + +N                   
Sbjct: 214 IADEDSPVQKALHNGSRQQVPDFGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRES 273

Query: 119 XXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPK 178
                      ++Q   RD   +     +ARKRLQ+NY++A NAKKQRTIQVMD+H++PK
Sbjct: 274 PSPAKPSRPSPSQQTIPRDKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPK 333

Query: 179 PKNKNTFFAKNKGGA 193
           PK K  FF + KGG+
Sbjct: 334 PK-KGGFFPR-KGGS 346


>AT5G05140.1 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr5:1520353-1522297 FORWARD LENGTH=436
          Length = 436

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 7/72 (9%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKHSS+++R+L K L+ +WKELVD+WV            +
Sbjct: 169 MSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVN-------TTKEI 221

Query: 61  MGDEDSPQQKTP 72
            G E +P+   P
Sbjct: 222 TGAEGTPESANP 233


>AT3G10820.2 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr3:3387358-3390693 FORWARD LENGTH=580
          Length = 580

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAAT 58
           M ++   L++T+IG+ VN LR+HSS+++ +L K L  +WK LVD+W+   TP E A T
Sbjct: 138 MSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWM--NTPEEMAGT 193


>AT3G10820.1 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr3:3387358-3389026 FORWARD LENGTH=288
          Length = 288

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAAT 58
           M ++   L++T+IG+ VN LR+HSS+++ +L K L  +WK LVD+W+   TP E A T
Sbjct: 138 MSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWM--NTPEEMAGT 193