Miyakogusa Predicted Gene

Lj0g3v0291859.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0291859.1 Non Chatacterized Hit- tr|D8RL34|D8RL34_SELML
Putative uncharacterized protein OS=Selaginella
moelle,52.86,0.000000000000006,CBS,Cystathionine beta-synthase, core;
Domain in cystathionine beta-synthase and ot,Cystathionine
be,NODE_13332_length_277_cov_906.707581.path1.1
         (75 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48530.1 | Symbols: KING1 | SNF1-related protein kinase regul...   116   3e-27
AT1G80090.1 | Symbols:  | Cystathionine beta-synthase (CBS) fami...    52   9e-08
AT1G69800.2 | Symbols:  | Cystathionine beta-synthase (CBS) prot...    52   1e-07
AT1G69800.1 | Symbols:  | Cystathionine beta-synthase (CBS) prot...    52   1e-07

>AT3G48530.1 | Symbols: KING1 | SNF1-related protein kinase
           regulatory subunit gamma 1 | chr3:17987559-17989592
           FORWARD LENGTH=424
          Length = 424

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/73 (75%), Positives = 61/73 (83%)

Query: 3   SEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIISRLVHEPHGYFGDF 62
           S  I C K  T+KELI +LD EKIHR+YVVDD GNL+GLITLRDII+RLVHEP GYFGDF
Sbjct: 352 SGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGLITLRDIIARLVHEPSGYFGDF 411

Query: 63  FDGVLPLPANSRV 75
           FDGV+PLP N RV
Sbjct: 412 FDGVMPLPENYRV 424


>AT1G80090.1 | Symbols:  | Cystathionine beta-synthase (CBS) family
           protein | chr1:30130104-30131855 FORWARD LENGTH=402
          Length = 402

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 34/46 (73%)

Query: 4   EFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIIS 49
           E +TC    T+ ++I ++  +++HRV+VVD +G LQGL++L DII+
Sbjct: 343 ELVTCHVTSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIA 388


>AT1G69800.2 | Symbols:  | Cystathionine beta-synthase (CBS) protein
           | chr1:26274416-26276325 REVERSE LENGTH=476
          Length = 476

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 6   ITCKKYCTIKELIQLLDREKIHRVYVVDDDGN-LQGLITLRDIISRLVHEPHGYF 59
           ITC+   T+  +I  L    +HRVYV   D N L G+ITLRD+IS  V EP  YF
Sbjct: 408 ITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVISCFVSEPPNYF 462


>AT1G69800.1 | Symbols:  | Cystathionine beta-synthase (CBS) protein
           | chr1:26274416-26276105 REVERSE LENGTH=447
          Length = 447

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 6   ITCKKYCTIKELIQLLDREKIHRVYVVDDDGN-LQGLITLRDIISRLVHEPHGYF 59
           ITC+   T+  +I  L    +HRVYV   D N L G+ITLRD+IS  V EP  YF
Sbjct: 379 ITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVISCFVSEPPNYF 433