Miyakogusa Predicted Gene

Lj0g3v0291709.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0291709.2 Non Chatacterized Hit- tr|D8SKU4|D8SKU4_SELML
Putative uncharacterized protein OS=Selaginella
moelle,48.11,0.000000000001, ,CUFF.19501.2
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40740.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   433   e-122

>AT5G40740.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:16302229-16306371 REVERSE LENGTH=741
          Length = 741

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/232 (92%), Positives = 223/232 (96%)

Query: 1   MTMDREKEREIELESAMYTNCLLLGLDPAIIGLGASNSTPRVGLFRHSNPKLGEQLLYFI 60
           MTMDREKERE+ELESAMYTNCLLLGLDP +IGLGASN TPRVGLFRHSNPKLGEQLLYFI
Sbjct: 1   MTMDREKERELELESAMYTNCLLLGLDPNVIGLGASNGTPRVGLFRHSNPKLGEQLLYFI 60

Query: 61  LSSLRGPIQSAKDFDKVWPIFDSAQSRDFRKVVQGIISELESPGALPRSNSRVSSLATCC 120
           LSSLRGP QS+KDFDKVWPIFDSAQSRDFRKVVQ IISELES GALPRSNSRVSSLATCC
Sbjct: 61  LSSLRGPAQSSKDFDKVWPIFDSAQSRDFRKVVQAIISELESQGALPRSNSRVSSLATCC 120

Query: 121 GPRFVELLWQLSLHALREVHRRTFTADLASNPLPAPLTDVAFSHAATLLPVTKARIALER 180
           GPRFVELLWQLSLHALREVHRRTF AD+ASNPLP+ LTDV+FSHAATLLPVTKARI LER
Sbjct: 121 GPRFVELLWQLSLHALREVHRRTFPADVASNPLPSSLTDVSFSHAATLLPVTKARIVLER 180

Query: 181 RKFLKNAEMAVQRQAMWSNLAHEMTAEFRGLCAEEAYLQQELEKLHDLRNKV 232
           R+FLKNAE AVQRQAMWSNLAHEMTAEFRGLCAEEAYLQQELEKL+DLRNKV
Sbjct: 181 RRFLKNAETAVQRQAMWSNLAHEMTAEFRGLCAEEAYLQQELEKLNDLRNKV 232