Miyakogusa Predicted Gene

Lj0g3v0291699.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0291699.2 Non Chatacterized Hit- tr|K3YMX8|K3YMX8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si015612,30.77,2e-18,seg,NULL,CUFF.19500.2
         (393 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40740.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   395   e-110

>AT5G40740.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:16302229-16306371 REVERSE LENGTH=741
          Length = 741

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/447 (51%), Positives = 281/447 (62%), Gaps = 59/447 (13%)

Query: 1   MDHSSQTPYSDVLSGQHMDLNAVQMDNEENDGSHF------------------SSETSTR 42
           MD SSQ P +++LS    D  ++  D E +DGS+                   S ET +R
Sbjct: 300 MDQSSQVPRAELLSAHSDDSASLADDKELSDGSYTNMHDHSLVDSFETASSQASDETLSR 359

Query: 43  VDDRTGRVHQTVDVAEVIRRWTHALQRIHKQSLLLAKANDGEGPDILRSAQEEGSGGHAE 102
           VDDR G+++QTVDVAEVIRRWTHALQRIHKQSLLLAKANDG+GPDILR+A + G+ GH E
Sbjct: 360 VDDRGGKINQTVDVAEVIRRWTHALQRIHKQSLLLAKANDGDGPDILRTASDGGTSGHVE 419

Query: 103 SLAATLAEHQQHLASFQVLINQLKDVAPTIQKSISECTEKVNCIASNLPPMNRHHGRSTS 162
           SLAATL EHQQHLASFQVLINQLK+V+P IQKSISECTE VN +   LPP+ R +G+++S
Sbjct: 420 SLAATLTEHQQHLASFQVLINQLKEVSPAIQKSISECTEMVNSLPPTLPPVTRSNGQASS 479

Query: 163 PVQAQSSGR-MDSSNDDVGEVTSRISNFQLDKVSASPPTLKLPQLFSLTP-SSGKAGNVQ 220
            +Q+Q SGR M+  ++DV E+TS +SN QL+KVSAS PTLKLPQLFS TP SSGK GN Q
Sbjct: 480 LLQSQGSGRIMEGVSNDVAELTSTMSNVQLEKVSAS-PTLKLPQLFSSTPTSSGKGGNGQ 538

Query: 221 RRHG--------------------------------SDSSFVKNLKRSVRETALXXXXXX 248
           +R                                  + SSFV NLK+SVRE AL      
Sbjct: 539 KRQTMASQVNKMESLSEKNSTDQALSNARPDNLPTDTSSSFVHNLKKSVREAAL-LIPSS 597

Query: 249 XXXXXXXXXXXXXXXFFAPLSETGFSHLDAEKRAASSRSKRLFESQMGDSFFESHASDGH 308
                          +F PLS TGFS   +E +A   R  R   S    SF E +  D  
Sbjct: 598 AGSSRDSQSDEGSEHYFVPLSATGFSRFPSETKALPLRGSRALTSLSEPSFLEPNVPDSF 657

Query: 309 GES-IDEFPDMLTDLEMLSDYDHVNGFLSYTGSNAT-SDAQQSIFDFEDAQDQVFSPPLL 366
             S   + PD   DL+   DYD+ NGFLS  GSN+  SDAQQS +D +   DQVFSPPLL
Sbjct: 658 APSKYSDIPDTYDDLDSFKDYDNGNGFLSVAGSNSVASDAQQSFYDID---DQVFSPPLL 714

Query: 367 MDSTLLADSFEDLLAPLSETETALIDH 393
           MDS+LL+D++EDLLAPLSETE AL++H
Sbjct: 715 MDSSLLSDAYEDLLAPLSETEAALMEH 741