Miyakogusa Predicted Gene

Lj0g3v0291479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0291479.1 tr|B9H204|B9H204_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_817748 PE=4
SV=1,45.69,0.000000000000001,
,NODE_85545_length_479_cov_42.432152.path1.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11390.1 | Symbols:  | Protein kinase superfamily protein | c...    64   3e-11
AT1G61640.1 | Symbols:  | Protein kinase superfamily protein | c...    57   4e-09
AT1G61640.2 | Symbols:  | Protein kinase superfamily protein | c...    57   5e-09

>AT1G11390.1 | Symbols:  | Protein kinase superfamily protein |
           chr1:3834762-3837305 REVERSE LENGTH=624
          Length = 624

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 8/66 (12%)

Query: 69  RSFSVTSASNGVTRHSQIAWKRLYRKYCSSDDGAFPPTIYMIAQAVSLALARSYLLVPGI 128
           RS++   A N V+ H+QIAW+RL+ KY           I  IAQA SL+L RS+LL+PGI
Sbjct: 77  RSYTTAPARNVVSHHAQIAWRRLHYKYSER--------ISTIAQAFSLSLTRSHLLIPGI 128

Query: 129 FAFTCG 134
            A TCG
Sbjct: 129 VAVTCG 134


>AT1G61640.1 | Symbols:  | Protein kinase superfamily protein |
           chr1:22746629-22749053 REVERSE LENGTH=621
          Length = 621

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 69  RSFSVTSASNGVTRHSQIAWKRLYRKYCSSDDGAFPPTIYMIAQAVSLALARSYLLVPGI 128
           RS+S+  ASN V +H+Q++W RL ++   S     P  I  IAQA SL+LARS+ L+PG+
Sbjct: 67  RSYSIAVASNVVKQHAQVSWGRLVQRVTLSRSWNLP-RISQIAQACSLSLARSHFLLPGL 125

Query: 129 FAFT 132
            A T
Sbjct: 126 LALT 129


>AT1G61640.2 | Symbols:  | Protein kinase superfamily protein |
           chr1:22747419-22749053 REVERSE LENGTH=477
          Length = 477

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 69  RSFSVTSASNGVTRHSQIAWKRLYRKYCSSDDGAFPPTIYMIAQAVSLALARSYLLVPGI 128
           RS+S+  ASN V +H+Q++W RL ++   S     P  I  IAQA SL+LARS+ L+PG+
Sbjct: 67  RSYSIAVASNVVKQHAQVSWGRLVQRVTLSRSWNLP-RISQIAQACSLSLARSHFLLPGL 125

Query: 129 FAFT 132
            A T
Sbjct: 126 LALT 129