Miyakogusa Predicted Gene

Lj0g3v0291129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0291129.1 Non Chatacterized Hit- tr|G7L8R7|G7L8R7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,53.77,0.000000000000002,seg,NULL,CUFF.19462.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55365.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    65   7e-12
AT5G56520.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    47   2e-06

>AT1G55365.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; BEST Arabidopsis thaliana protein match is:
          unknown protein (TAIR:AT3G13500.1); Has 29 Blast hits
          to 29 proteins in 6 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr1:20673983-20674363 REVERSE LENGTH=126
          Length = 126

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 1  MVLNSMVVVTVARVSSEAWQ--WLTCIEEPLSSEQLFDLLCTFPFHQLGRIALCFCSFFC 58
          MV NS +V+ VA VS++ WQ  W     + + +EQLFD+   FP HQL R  LC  +F C
Sbjct: 1  MVFNSAMVMAVAEVSTDTWQLIWRVPSSQRIDTEQLFDIAVCFPIHQLSRFVLCLWTFMC 60

Query: 59 LPQAHPFY 66
          LP +  FY
Sbjct: 61 LPSSDSFY 68


>AT5G56520.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G55365.1); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr5:22885226-22885531 FORWARD LENGTH=101
          Length = 101

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 1  MVLNSMVVVTVARVSSEAWQWLTCI--EEPLSSEQLFDLLCTFPFHQLGRIALCFCSFFC 58
          MV     VV+VA +S+E +Q L  I   + +SS ++  L+C FP  QLGR  L F ++ C
Sbjct: 1  MVFRGDTVVSVAHISAEIFQRLRWIPPSDRISSGEMLQLVCCFPLQQLGRFVLWFWNYIC 60

Query: 59 LPQAHPFY 66
          +P     Y
Sbjct: 61 VPPPEILY 68