Miyakogusa Predicted Gene

Lj0g3v0290509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290509.1 tr|E5GBE5|E5GBE5_CUCME Nucleotide binding protein
OS=Cucumis melo subsp. melo PE=4 SV=1,26,2e-18,no
description,WD40/YVTN repeat-like-containing domain; WD40
repeat-like,WD40-repeat-containing doma,CUFF.19429.1
         (455 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35560.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   474   e-134
AT4G35560.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   471   e-133
AT5G05570.2 | Symbols:  | transducin family protein / WD-40 repe...   100   4e-21
AT5G05570.1 | Symbols:  | transducin family protein / WD-40 repe...    89   5e-18

>AT4G35560.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr4:16881562-16886878 FORWARD LENGTH=1049
          Length = 1049

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/454 (53%), Positives = 325/454 (71%), Gaps = 8/454 (1%)

Query: 7   ASSKLLQVVLLNEHTESRTIKLGLHLSESCIDMEIISPSASADQSKQKQDLFLILGKSGH 66
           +SS  LQVVLLNE TE+R IKLGLH+SE C DME+I    + +QSK KQD   +LGKSG 
Sbjct: 306 SSSNSLQVVLLNEQTETRMIKLGLHVSEPCADMEMIIADVN-EQSKHKQDFLFVLGKSGR 364

Query: 67  LHLYDDSLIERYLLQCQSKSAPSFPKEVIVKIPLADSS-ITTSKFITNNPNMLLNSEDEY 125
           ++ YDD +IE+YL+Q QSKS+PS PKE +VK+P +DSS IT  KF+TN P+ LLN  DE 
Sbjct: 365 VYAYDDYMIEKYLIQSQSKSSPSLPKETVVKLPFSDSSSITVGKFLTN-PSHLLNLSDED 423

Query: 126 YMQLVKNHPLFAPVETNQKDGM--SKFTGFSKVQNLYITGHNNGAINFWDASCPFFTPIL 183
           Y QL K+   F P  T  K+    + F GF+KV+N+YITGH +G I+ WD +C F   +L
Sbjct: 424 YAQLAKDAVPFLPFHTVPKESSRSAHFPGFTKVKNVYITGHCDGTISVWDMTCSFPILVL 483

Query: 184 QLKQQSENDFSLSG-IPLTALYFDSNSPLLVSGDQSGTVRIFRFKPEPYAT-NSFMSLTG 241
            LK+Q + D S  G   LTAL++DSNS LLVSGD +G VR++RFKPEPY T NSF+   G
Sbjct: 484 FLKEQIDQDVSSRGNAALTALHYDSNSRLLVSGDHNGMVRLYRFKPEPYLTENSFIPFQG 543

Query: 242 GTKKGTDHIIQSVKLVKVNSAILSMNIDHSSMHLAVGSDQGYVSVFNLDGPTLLYSKHIA 301
             KKG +HI+QSVK +K+  +I  +    +S HLA+GSDQG+VS+ +++   +LY+KHIA
Sbjct: 544 SLKKGNNHIVQSVKYIKLTGSITCIQKSQNSKHLAIGSDQGHVSLVDIEEANVLYTKHIA 603

Query: 302 SEISSGIISLQSLTCSLNGFDKNILAVVTKDSSVLALDNETGNPLSTGTVHPKKPAKALF 361
           S+I  GIISLQ  +C + GF+KN+L V  +DSSV ALD++TGN + T  + PKKP K L+
Sbjct: 604 SDICPGIISLQFESCIVQGFEKNVLVVAMRDSSVFALDSDTGNMIGTNMIKPKKPFKVLY 663

Query: 362 MQVLGGQAEPIAKNGVDSSEGNHIEDATTKQLYILLCSEKALYVYSLTHAVQGVKKVLYK 421
           MQ+L G+ +  + NG D+S  + +E+ + +Q  +L+CSEKA+Y+YSL H VQGVKKVL+K
Sbjct: 664 MQILDGKQD-TSGNGFDTSRESTVEEISIRQPSVLVCSEKAIYIYSLAHVVQGVKKVLHK 722

Query: 422 KKFNSSSCCWASTFYSPSDIGLLLLFTSGKIELR 455
           KKF+SS  C ASTFY  S +GL L+FT G +E+R
Sbjct: 723 KKFSSSPICSASTFYGTSGVGLTLVFTDGTVEIR 756


>AT4G35560.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr4:16881562-16886878 FORWARD LENGTH=1050
          Length = 1050

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/455 (53%), Positives = 325/455 (71%), Gaps = 9/455 (1%)

Query: 7   ASSKLLQVVLLNEHTESRTIKLGLHLSESCIDMEIISPSASADQSKQKQDLFLILGKSGH 66
           +SS  LQVVLLNE TE+R IKLGLH+SE C DME+I    + +QSK KQD   +LGKSG 
Sbjct: 306 SSSNSLQVVLLNEQTETRMIKLGLHVSEPCADMEMIIADVN-EQSKHKQDFLFVLGKSGR 364

Query: 67  LHLYDDSLIERYLLQCQSKSAPSFPKEVIVKIPLADSS-ITTSKFITNNPNMLLNSEDEY 125
           ++ YDD +IE+YL+Q QSKS+PS PKE +VK+P +DSS IT  KF+TN P+ LLN  DE 
Sbjct: 365 VYAYDDYMIEKYLIQSQSKSSPSLPKETVVKLPFSDSSSITVGKFLTN-PSHLLNLSDED 423

Query: 126 YMQLVKNHPLFAPVETNQKDGM--SKFTGFSKVQNLYITGHNNGAINFWDASCPFFTPIL 183
           Y QL K+   F P  T  K+    + F GF+KV+N+YITGH +G I+ WD +C F   +L
Sbjct: 424 YAQLAKDAVPFLPFHTVPKESSRSAHFPGFTKVKNVYITGHCDGTISVWDMTCSFPILVL 483

Query: 184 QLK-QQSENDFSLSG-IPLTALYFDSNSPLLVSGDQSGTVRIFRFKPEPYAT-NSFMSLT 240
            LK QQ + D S  G   LTAL++DSNS LLVSGD +G VR++RFKPEPY T NSF+   
Sbjct: 484 FLKEQQIDQDVSSRGNAALTALHYDSNSRLLVSGDHNGMVRLYRFKPEPYLTENSFIPFQ 543

Query: 241 GGTKKGTDHIIQSVKLVKVNSAILSMNIDHSSMHLAVGSDQGYVSVFNLDGPTLLYSKHI 300
           G  KKG +HI+QSVK +K+  +I  +    +S HLA+GSDQG+VS+ +++   +LY+KHI
Sbjct: 544 GSLKKGNNHIVQSVKYIKLTGSITCIQKSQNSKHLAIGSDQGHVSLVDIEEANVLYTKHI 603

Query: 301 ASEISSGIISLQSLTCSLNGFDKNILAVVTKDSSVLALDNETGNPLSTGTVHPKKPAKAL 360
           AS+I  GIISLQ  +C + GF+KN+L V  +DSSV ALD++TGN + T  + PKKP K L
Sbjct: 604 ASDICPGIISLQFESCIVQGFEKNVLVVAMRDSSVFALDSDTGNMIGTNMIKPKKPFKVL 663

Query: 361 FMQVLGGQAEPIAKNGVDSSEGNHIEDATTKQLYILLCSEKALYVYSLTHAVQGVKKVLY 420
           +MQ+L G+ +  + NG D+S  + +E+ + +Q  +L+CSEKA+Y+YSL H VQGVKKVL+
Sbjct: 664 YMQILDGKQD-TSGNGFDTSRESTVEEISIRQPSVLVCSEKAIYIYSLAHVVQGVKKVLH 722

Query: 421 KKKFNSSSCCWASTFYSPSDIGLLLLFTSGKIELR 455
           KKKF+SS  C ASTFY  S +GL L+FT G +E+R
Sbjct: 723 KKKFSSSPICSASTFYGTSGVGLTLVFTDGTVEIR 757


>AT5G05570.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:1656766-1663728 FORWARD
           LENGTH=1099
          Length = 1099

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 208/487 (42%), Gaps = 68/487 (13%)

Query: 27  KLGLHLSESCIDMEIISPSASADQSKQKQDLFLILGKSGHLHLYDDSLIERYLLQCQSK- 85
           +  L LS S  DM ++SP AS   S+Q      +L   G L  YDD+ +   + Q ++K 
Sbjct: 362 RADLTLSGSFADM-VLSPIAS---SRQSGVFLFLLTNPGQLQAYDDTSLASLMSQKENKI 417

Query: 86  SAPSFPKEVIVKIPLADSSITTSKFITNNPNMLLN-SEDEYYMQLVKNHPLFAPVETNQ- 143
           S    P  ++V  P  D  +T + F   N N   + +  E  +      P     E+ Q 
Sbjct: 418 SVSPLPYPMVV--PTMDPHMTVATFSALNVNDKTSLALSEIVLAAKARTPRTPSGESAQW 475

Query: 144 --KDGMSKFTGFSKVQNLYITGHNNGAINFWDASCPFFTPILQLK-QQSENDFSLSGIPL 200
               G+       K++ LY+ G+ +G++  WDA+ P  + I  L+ + S  D +     +
Sbjct: 476 PLTGGVPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIYILEPKASVIDITGVDASV 535

Query: 201 TALYFDSNSPLLVSGDQSGTVRIFRFKPEPYATNSFMSLTGGTKKGTDHIIQS------V 254
           TA  F S +  L  G++ G VR+++     + +   + +   T+K   H+ Q        
Sbjct: 536 TAFCFCSKTSCLAVGNECGMVRLYKLV--GHTSGGTLEVVTNTEKKAHHLHQEDGPQWLA 593

Query: 255 KLVKVNSAILSMNIDHSSMHLAVGSDQGYVSVFNLDGPTLLYSKHIASEISSGIISLQSL 314
               ++S + ++    S+  LAVG   G V+V ++  P++L+  +  S+  S I SL   
Sbjct: 594 AFSFLSSPVCTLQFVQSTRRLAVGFKCGKVAVLDIGVPSVLFVTNSLSDSGSPIKSLYVK 653

Query: 315 TC--------------SLNGFDKNILAVVTKDSSVLALDNETGNPLSTGTVHPKKPAKAL 360
           +               S+N  D  +L  +TKD   + LD  TG  L++  + P K   A+
Sbjct: 654 SSSAPTGSKSDPTDHNSINSEDDLLLCAMTKDGQTILLDGNTGKILAS-CLRPLKNPTAI 712

Query: 361 FMQVLGG-------QAEPIAKN--GVDSSEG-NHI------------EDATTKQLYI--- 395
            M ++          +E  A+N  G D  E  +HI            ++A T+   I   
Sbjct: 713 CMHIIENCYENYETPSEKPAENPSGKDKHENKSHIIKASESHSPDGEQNAVTETKLIDQI 772

Query: 396 ------LLCSEKALYVYSLTHAVQGVKKVLYKKKFNSSSCCWASTFYSPS-DIGLLLLFT 448
                 L+CSE AL +Y++    QG  + + +       CCW         +  +LL + 
Sbjct: 773 FANSLFLMCSEDALRLYTVKSLSQGSLESIMEVNL-PRPCCWMGILKKDGRECAVLLFYR 831

Query: 449 SGKIELR 455
           +G IE+R
Sbjct: 832 TGHIEIR 838


>AT5G05570.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:1656766-1663728 FORWARD
           LENGTH=1124
          Length = 1124

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 210/511 (41%), Gaps = 91/511 (17%)

Query: 27  KLGLHLSESCIDMEIISPSASADQSKQKQDLFLILGKSGHLHLYDDSLIERYLLQCQSK- 85
           +  L LS S  DM ++SP AS   S+Q      +L   G L  YDD+ +   + Q ++K 
Sbjct: 362 RADLTLSGSFADM-VLSPIAS---SRQSGVFLFLLTNPGQLQAYDDTSLASLMSQKENKI 417

Query: 86  SAPSFPKEVIVKIPLADSSITTSKFITNNPNMLLN-SEDEYYMQLVKNHPLFAPVETNQ- 143
           S    P  ++V  P  D  +T + F   N N   + +  E  +      P     E+ Q 
Sbjct: 418 SVSPLPYPMVV--PTMDPHMTVATFSALNVNDKTSLALSEIVLAAKARTPRTPSGESAQW 475

Query: 144 --KDGMSKFTGFSKVQNLYITGHNNGAINFWDASCPFFTPILQLK-QQSENDFSLSGIPL 200
               G+       K++ LY+ G+ +G++  WDA+ P  + I  L+ + S  D +     +
Sbjct: 476 PLTGGVPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIYILEPKASVIDITGVDASV 535

Query: 201 TALYFDSNSPLLVSGDQSGTVRIFRFKPEPYATNSFMSLTGGTKKG-------------- 246
           TA  F S +  L  G++ G VR+++      +  +   +T   KKG              
Sbjct: 536 TAFCFCSKTSCLAVGNECGMVRLYKLVGH-TSGGTLEVVTNTEKKGLAIVTTLTLWICYA 594

Query: 247 TDHIIQSVKLVK----------------VNSAILSMNIDHSSMHLAVGSDQGYVSVFNLD 290
             H + S+ +                  ++S + ++    S+  LAVG   G V+V ++ 
Sbjct: 595 LSHAVGSLLVAHHLHQEDGPQWLAAFSFLSSPVCTLQFVQSTRRLAVGFKCGKVAVLDIG 654

Query: 291 GPTLLYSKHIASEISSGIISLQSLTC--------------SLNGFDKNILAVVTKDSSVL 336
            P++L+  +  S+  S I SL   +               S+N  D  +L  +TKD   +
Sbjct: 655 VPSVLFVTNSLSDSGSPIKSLYVKSSSAPTGSKSDPTDHNSINSEDDLLLCAMTKDGQTI 714

Query: 337 ALDNETGNPLSTGTVHPKKPAKALFMQVLGG-------QAEPIAKN--GVDSSEG-NHI- 385
            LD  TG  L++  + P K   A+ M ++          +E  A+N  G D  E  +HI 
Sbjct: 715 LLDGNTGKILAS-CLRPLKNPTAICMHIIENCYENYETPSEKPAENPSGKDKHENKSHII 773

Query: 386 -----------EDATTKQLYI---------LLCSEKALYVYSLTHAVQGVKKVLYKKKFN 425
                      ++A T+   I         L+CSE AL +Y++    QG  + + +    
Sbjct: 774 KASESHSPDGEQNAVTETKLIDQIFANSLFLMCSEDALRLYTVKSLSQGSLESIMEVNL- 832

Query: 426 SSSCCWASTFYSPS-DIGLLLLFTSGKIELR 455
              CCW         +  +LL + +G IE+R
Sbjct: 833 PRPCCWMGILKKDGRECAVLLFYRTGHIEIR 863