Miyakogusa Predicted Gene

Lj0g3v0290499.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290499.1 Non Chatacterized Hit- tr|A5BTB8|A5BTB8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,56.07,2e-19,seg,NULL; CHD5,CHD5-like protein;
coiled-coil,NULL,CUFF.19418.1
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16444.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   149   7e-37

>AT4G16444.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr4:9274791-9276056
           REVERSE LENGTH=178
          Length = 178

 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 106/162 (65%), Gaps = 5/162 (3%)

Query: 13  LAAPLIFFVVIAFQFASHWIDQFKKSGD-NGKEIQLRGEIKQLLKEANSLSQPSTYXXXX 71
           LAAPL F VV+ FQ  S W+DQ KK G  N +E +LR EIKQLL+EA++LSQP+T+    
Sbjct: 13  LAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREASALSQPATFAQAA 72

Query: 72  XXXXXXXXXXXXLAKCHNLHDKDTAL----YSNVLLVSKVLTYLILLIWFWSAPVASISQ 127
                       LA+    H K+  L    Y   LL SKV+ YLIL++ FW  P+A I++
Sbjct: 73  KLRRSAATKEKELAQYLEQHHKEIKLSYDMYGKGLLASKVVIYLILVLCFWRTPIAIIAK 132

Query: 128 QLVQPFGRLLSWRTGGVQNNNIMVGIIPWLVVCSRVSRFICR 169
           QLVQPFG LLSW TGG    ++MVGIIPWL++ +RVS+++CR
Sbjct: 133 QLVQPFGTLLSWGTGGHMTGHVMVGIIPWLILSNRVSKYVCR 174