Miyakogusa Predicted Gene

Lj0g3v0290399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290399.1 tr|C1JXM3|C1JXM3_LIZAU RAD1-like protein OS=Liza
aurata GN=rad1 PE=2 SV=1,26.97,3e-18,no description,NULL; CELL CYCLE
CHECKPOINT PROTEIN RAD1,Rad1/Rec1/Rad17; Rad1,Rad1/Rec1/Rad17; DNA
c,CUFF.19397.1
         (301 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17760.1 | Symbols:  | damaged DNA binding;exodeoxyribonuclea...   458   e-129
AT4G17760.2 | Symbols:  | damaged DNA binding;exodeoxyribonuclea...   381   e-106

>AT4G17760.1 | Symbols:  | damaged DNA binding;exodeoxyribonuclease
           IIIs | chr4:9871820-9873257 FORWARD LENGTH=300
          Length = 300

 Score =  458 bits (1179), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 212/293 (72%), Positives = 250/293 (85%), Gaps = 2/293 (0%)

Query: 9   EDEAPDVLCHLENVQGLVDALTAVRWKRHQDAVLELSEHGIVLIVEESGCLQAKVYLKRE 68
           E + PD++C L+NVQG+VDALT VRWKRHQDA++ELSEHGIVLIVEESGCLQAKVYL+RE
Sbjct: 10  EPDTPDLICQLDNVQGMVDALTCVRWKRHQDALVELSEHGIVLIVEESGCLQAKVYLQRE 69

Query: 69  LFIRYDYNAQARPRFGVSLGLFVDCLNAFSVHGHSSVIQIQYPGPDMQVLLKSVDSPDAS 128
           LF +Y+Y AQ RPRFG+SLGL VDCLN FS  GHS+ I+I+YPGPDM++LLKSVD+ ++ 
Sbjct: 70  LFTKYEYGAQGRPRFGISLGLLVDCLNTFSSPGHSNTIEIKYPGPDMELLLKSVDTLNSC 129

Query: 129 ICAEIRTRIPDTVAWDYNFEPAGTNPLTFTVKSAALKEAIEDLEWPGSSIQIILEPDPPS 188
           I +EIRTRIP+TV WDYNFE AG  PLTFTVKSAALKEAI+DLEWPGSS+QI L+ +PP 
Sbjct: 130 IYSEIRTRIPETVTWDYNFEQAGIAPLTFTVKSAALKEAIDDLEWPGSSVQISLQKEPPC 189

Query: 189 VTMRAEGHGDLQIDFMYYVNSDLLAAFQCDNHTSFKYKYKFLRATTSNIPNSVIKENRGS 248
           V  R EGHGDLQIDFMYY N+DLL AF CD   S+ YKYKFL+ATT+NIP +V++ENRGS
Sbjct: 190 VIFRGEGHGDLQIDFMYYANTDLLLAFHCDTEVSYGYKYKFLKATTANIPGNVVRENRGS 249

Query: 249 KLSIGRGGMLKVQHLVSIAKPSASHTHVDSAGYQQPGRIAHIEFFLKPEESED 301
           KL+IGRGGMLKVQHLVS++K  A    V+SAGYQ P RIA+IEFF+KPEE  D
Sbjct: 250 KLTIGRGGMLKVQHLVSVSKALAP--QVESAGYQPPSRIAYIEFFVKPEEPAD 300


>AT4G17760.2 | Symbols:  | damaged DNA binding;exodeoxyribonuclease
           IIIs | chr4:9871921-9873257 FORWARD LENGTH=250
          Length = 250

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/247 (71%), Positives = 208/247 (84%), Gaps = 2/247 (0%)

Query: 55  ESGCLQAKVYLKRELFIRYDYNAQARPRFGVSLGLFVDCLNAFSVHGHSSVIQIQYPGPD 114
           ESGCLQAKVYL+RELF +Y+Y AQ RPRFG+SLGL VDCLN FS  GHS+ I+I+YPGPD
Sbjct: 6   ESGCLQAKVYLQRELFTKYEYGAQGRPRFGISLGLLVDCLNTFSSPGHSNTIEIKYPGPD 65

Query: 115 MQVLLKSVDSPDASICAEIRTRIPDTVAWDYNFEPAGTNPLTFTVKSAALKEAIEDLEWP 174
           M++LLKSVD+ ++ I +EIRTRIP+TV WDYNFE AG  PLTFTVKSAALKEAI+DLEWP
Sbjct: 66  MELLLKSVDTLNSCIYSEIRTRIPETVTWDYNFEQAGIAPLTFTVKSAALKEAIDDLEWP 125

Query: 175 GSSIQIILEPDPPSVTMRAEGHGDLQIDFMYYVNSDLLAAFQCDNHTSFKYKYKFLRATT 234
           GSS+QI L+ +PP V  R EGHGDLQIDFMYY N+DLL AF CD   S+ YKYKFL+ATT
Sbjct: 126 GSSVQISLQKEPPCVIFRGEGHGDLQIDFMYYANTDLLLAFHCDTEVSYGYKYKFLKATT 185

Query: 235 SNIPNSVIKENRGSKLSIGRGGMLKVQHLVSIAKPSASHTHVDSAGYQQPGRIAHIEFFL 294
           +NIP +V++ENRGSKL+IGRGGMLKVQHLVS++K  A    V+SAGYQ P RIA+IEFF+
Sbjct: 186 ANIPGNVVRENRGSKLTIGRGGMLKVQHLVSVSK--ALAPQVESAGYQPPSRIAYIEFFV 243

Query: 295 KPEESED 301
           KPEE  D
Sbjct: 244 KPEEPAD 250