Miyakogusa Predicted Gene

Lj0g3v0289759.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0289759.3 Non Chatacterized Hit- tr|I1N5W7|I1N5W7_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,44.3,9e-19,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RETROELEMENT POL POLY,CUFF.19359.3
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24090.1 | Symbols:  | RNase H family protein | chr1:8520834-...   267   5e-72
AT5G51080.2 | Symbols:  | RNase H family protein | chr5:20769022...   249   1e-66
AT5G51080.1 | Symbols:  | RNase H family protein | chr5:20769022...   249   1e-66
AT5G51080.3 | Symbols:  | RNase H family protein | chr5:20769022...   247   7e-66
AT3G01410.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   243   1e-64
AT3G01410.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   243   1e-64

>AT1G24090.1 | Symbols:  | RNase H family protein |
           chr1:8520834-8522737 FORWARD LENGTH=353
          Length = 353

 Score =  267 bits (683), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 150/318 (47%), Positives = 194/318 (61%), Gaps = 36/318 (11%)

Query: 1   MNCLSQLSSYTATIVGRTARFIAANRXXXXXXILSFPRKSAFS--GVSSCHSELFLNRFH 58
           MNCLS   SY A  + + + ++++            P KS      VSS      ++ + 
Sbjct: 1   MNCLSHARSYIALGLLKRSSYVSS--IPWNECFFYMPSKSCLKPVAVSSVFGICSVHSYS 58

Query: 59  FRCYSARKGRKPEAVM---EQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVY 115
            R  + +       V+   ++EKDAF+VVRKGD++G+Y  LSD QAQVGSSV D PVSVY
Sbjct: 59  SRSKAVKSKMLSSTVVSAVDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVY 118

Query: 116 KGYSLSKGTEEYLLSHGLKNALYTIEASELKEDLFGLLVPCPFQRVTGPT---------- 165
           KGYSL K TEEYL S GLK  LY++ AS+LK+D+FG L PC FQ     T          
Sbjct: 119 KGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQEPAPCTVKVSEDETTS 178

Query: 166 ---------------SISDDPLRKQVKLENDAVAEASSLETTCLLEFDGASKGNPGKAGA 210
                          SIS DPL K  K+E  A       + TC +EFDGASKGNPG +GA
Sbjct: 179 ETKSKDDKKDQLPSASISYDPLEKLSKVEPSAYIS----DETCFIEFDGASKGNPGLSGA 234

Query: 211 GAILRSTDGSLICRLREGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQI 270
            A+L++ DGSLICR+R+G GIATNNAAEY A+ILG++YA++KG+  I++KGDSKLVCMQI
Sbjct: 235 AAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQI 294

Query: 271 DGSWKVKNANLSSLYKVA 288
            G WKV +  L+ L+K A
Sbjct: 295 KGQWKVNHEVLAKLHKEA 312


>AT5G51080.2 | Symbols:  | RNase H family protein |
           chr5:20769022-20770675 REVERSE LENGTH=322
          Length = 322

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/299 (48%), Positives = 186/299 (62%), Gaps = 29/299 (9%)

Query: 1   MNCLSQLSSYTATIVGRTARFIAANRXXXXXXILSFPR--KSAFSGVSSCHSELFLNRFH 58
           MN  S+  SY + ++ R + ++ ++         S     K A   VSS H         
Sbjct: 1   MNRFSRARSYISLVLFRKSSYVTSHIPWNQCFYTSLKSSLKPASVSVSSVH--------- 51

Query: 59  FRCYSARKGRKPEAVMEQ---------EKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCD 109
             CYS+R       + +          EKDAF+VVRKGDIVG+Y  L D QAQVGSSV D
Sbjct: 52  --CYSSRSKTAKSKMSKSSVSVSDSDKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYD 109

Query: 110 PPVSVYKGYSLSKGTEEYLLSHGLKNALYTIEASELKEDLFGLLVPCPFQRVTGPTSISD 169
           PPVSVYKGYSL K TEE L + GLK  LY   A +LKED+FG L PC FQ      S+S 
Sbjct: 110 PPVSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGALTPCLFQDQLPSASMS- 168

Query: 170 DPLRKQVKLENDAVAEASSLETTCLLEFDGASKGNPGKAGAGAILRSTDGSLICRLREGA 229
             + K  +LE  A    +S ET C++EFDGASKGNPG +GA A+L++ DGSLI ++R+G 
Sbjct: 169 --VEKLAELEPSA---DTSYET-CIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGL 222

Query: 230 GIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANLSSLYKVA 288
           GIATNNAAEY  +ILG+++A++KG+T I++K DSKLVCMQ+ G WKV +  LS L+K A
Sbjct: 223 GIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEA 281


>AT5G51080.1 | Symbols:  | RNase H family protein |
           chr5:20769022-20770675 REVERSE LENGTH=322
          Length = 322

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/299 (48%), Positives = 186/299 (62%), Gaps = 29/299 (9%)

Query: 1   MNCLSQLSSYTATIVGRTARFIAANRXXXXXXILSFPR--KSAFSGVSSCHSELFLNRFH 58
           MN  S+  SY + ++ R + ++ ++         S     K A   VSS H         
Sbjct: 1   MNRFSRARSYISLVLFRKSSYVTSHIPWNQCFYTSLKSSLKPASVSVSSVH--------- 51

Query: 59  FRCYSARKGRKPEAVMEQ---------EKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCD 109
             CYS+R       + +          EKDAF+VVRKGDIVG+Y  L D QAQVGSSV D
Sbjct: 52  --CYSSRSKTAKSKMSKSSVSVSDSDKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYD 109

Query: 110 PPVSVYKGYSLSKGTEEYLLSHGLKNALYTIEASELKEDLFGLLVPCPFQRVTGPTSISD 169
           PPVSVYKGYSL K TEE L + GLK  LY   A +LKED+FG L PC FQ      S+S 
Sbjct: 110 PPVSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGALTPCLFQDQLPSASMS- 168

Query: 170 DPLRKQVKLENDAVAEASSLETTCLLEFDGASKGNPGKAGAGAILRSTDGSLICRLREGA 229
             + K  +LE  A    +S ET C++EFDGASKGNPG +GA A+L++ DGSLI ++R+G 
Sbjct: 169 --VEKLAELEPSA---DTSYET-CIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGL 222

Query: 230 GIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANLSSLYKVA 288
           GIATNNAAEY  +ILG+++A++KG+T I++K DSKLVCMQ+ G WKV +  LS L+K A
Sbjct: 223 GIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEA 281


>AT5G51080.3 | Symbols:  | RNase H family protein |
           chr5:20769022-20770486 REVERSE LENGTH=259
          Length = 259

 Score =  247 bits (630), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 157/212 (74%), Gaps = 7/212 (3%)

Query: 77  EKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSHGLKNA 136
           EKDAF+VVRKGDIVG+Y  L D QAQVGSSV DPPVSVYKGYSL K TEE L + GLK  
Sbjct: 14  EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 73

Query: 137 LYTIEASELKEDLFGLLVPCPFQRVTGPTSISDDPLRKQVKLENDAVAEASSLETTCLLE 196
           LY   A +LKED+FG L PC FQ      S+S   + K  +LE  A    +S ET C++E
Sbjct: 74  LYVFRALDLKEDMFGALTPCLFQDQLPSASMS---VEKLAELEPSA---DTSYET-CIIE 126

Query: 197 FDGASKGNPGKAGAGAILRSTDGSLICRLREGAGIATNNAAEYRAMILGMRYALKKGFTG 256
           FDGASKGNPG +GA A+L++ DGSLI ++R+G GIATNNAAEY  +ILG+++A++KG+T 
Sbjct: 127 FDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTK 186

Query: 257 IRIKGDSKLVCMQIDGSWKVKNANLSSLYKVA 288
           I++K DSKLVCMQ+ G WKV +  LS L+K A
Sbjct: 187 IKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEA 218


>AT3G01410.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:153650-155439 REVERSE
           LENGTH=294
          Length = 294

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/248 (50%), Positives = 163/248 (65%), Gaps = 31/248 (12%)

Query: 72  AVMEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSH 131
           + ME EKDAFY+VRKGDI+GVY SLS+ Q Q GSSV  P +SVYKGY   KG E+ L S 
Sbjct: 3   STMEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSF 62

Query: 132 GLKNALYTIEASELKEDLFGLLVPCPFQRVTG----------PT------------SISD 169
           G+KNAL+++ AS +K+D FG L+PCP Q+ +           P+            S S 
Sbjct: 63  GIKNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSP 122

Query: 170 DPLRKQVKLENDAVAE-ASSLET--------TCLLEFDGASKGNPGKAGAGAILRSTDGS 220
            P +KQ+K+END +    SSL T        +C +EFDGASKGNPGKAGAGA+LR++D S
Sbjct: 123 SPPQKQLKIENDMLRRIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNS 182

Query: 221 LICRLREGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNAN 280
           ++  LREG G ATNN AEYRA++LG+R AL KGF  + + GDS LVCMQ+ G+WK  +  
Sbjct: 183 VLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPK 242

Query: 281 LSSLYKVA 288
           ++ L K A
Sbjct: 243 MAELCKQA 250


>AT3G01410.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:153650-155439 REVERSE
           LENGTH=294
          Length = 294

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/248 (50%), Positives = 163/248 (65%), Gaps = 31/248 (12%)

Query: 72  AVMEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSH 131
           + ME EKDAFY+VRKGDI+GVY SLS+ Q Q GSSV  P +SVYKGY   KG E+ L S 
Sbjct: 3   STMEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSF 62

Query: 132 GLKNALYTIEASELKEDLFGLLVPCPFQRVTG----------PT------------SISD 169
           G+KNAL+++ AS +K+D FG L+PCP Q+ +           P+            S S 
Sbjct: 63  GIKNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSP 122

Query: 170 DPLRKQVKLENDAVAE-ASSLET--------TCLLEFDGASKGNPGKAGAGAILRSTDGS 220
            P +KQ+K+END +    SSL T        +C +EFDGASKGNPGKAGAGA+LR++D S
Sbjct: 123 SPPQKQLKIENDMLRRIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNS 182

Query: 221 LICRLREGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNAN 280
           ++  LREG G ATNN AEYRA++LG+R AL KGF  + + GDS LVCMQ+ G+WK  +  
Sbjct: 183 VLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPK 242

Query: 281 LSSLYKVA 288
           ++ L K A
Sbjct: 243 MAELCKQA 250