Miyakogusa Predicted Gene

Lj0g3v0289679.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0289679.2 tr|G7K958|G7K958_MEDTR TNP1 OS=Medicago
truncatula GN=MTR_5g061300 PE=4 SV=1,33.81,0.000000000000003,seg,NULL;
Transposase_24,Transposase, Ptta/En/Spm, plant,CUFF.19353.2
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    62   5e-10
AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    61   8e-10

>AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr1:14999762-15001868 REVERSE LENGTH=390
          Length = 390

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 21/190 (11%)

Query: 1   MRDRLKNRPMDVPEAHFKKLIAYWKNSTVQRISQINAANRAKKKYMHRTGPVNFARIRAQ 60
           + + L+NRP  VPE  +  L+        +++ + N  N+      H  G  +F+R R +
Sbjct: 160 LNETLQNRPEKVPEDQWSHLVHLIFTDKWRKMQERNTKNQKNHIMPHLCGRKSFSRKRDE 219

Query: 61  LRAKKENDDDVSQAEMFIMTRQSRKGKQVDEETQTAIAILQDSIQNSNESETF------- 113
           ++ K        +AE FI +R+   G  V +E +     L  ++ N N   T+       
Sbjct: 220 IKIKTGKTP--CRAEFFIESRKKHDGSFVSDEAKLRAEALT-TLLNLNPQVTYNGTASLD 276

Query: 114 ---TSLFGKEKSGRVRCYGRTLTPSMM--------KKNVEISAIKKQHKDEVSGMKRQKD 162
              + +FG E+ GRVRC GR  TPS +        ++++E S +  Q K +V  +  Q +
Sbjct: 277 DEYSQVFGPERPGRVRCVGRGPTPSRLVRHSNATRRQDIENSELVAQLKTQVKTLGDQVN 336

Query: 163 GLTLLVRNML 172
            ++  +  +L
Sbjct: 337 AMSTFLGQIL 346


>AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr3:11827752-11834262 REVERSE LENGTH=510
          Length = 510

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 21/190 (11%)

Query: 1   MRDRLKNRPMDVPEAHFKKLIAYWKNSTVQRISQINAANRAKKKYMHRTGPVNFARIRAQ 60
           + + L+NRP  VPE  +  L+        +++ + N  N+      H  G  +F+R R +
Sbjct: 280 LNETLENRPEKVPEDQWSHLVHLRFTDKWRKMQERNTKNQKNHIMPHLCGRKSFSRKRDE 339

Query: 61  LRAKKENDDDVSQAEMFIMTRQSRKGKQVDEETQTAIAILQDSIQNSNESETF------- 113
           ++ K        + E FI +R+   G  V +E +   AI   ++ N N   T+       
Sbjct: 340 IKIKTGKTP--CRVEFFIESRKKHDGSFVSDEAKLR-AIALTTLLNLNPQVTYNGTASLD 396

Query: 114 ---TSLFGKEKSGRVRCYGRTLTPSMM--------KKNVEISAIKKQHKDEVSGMKRQKD 162
              + +FG E+ GRV C GR  TPS +        +K++E S +  Q K +V  +  Q +
Sbjct: 397 DEYSQVFGPERPGRVHCVGRGPTPSRLVRHSNATRRKDIENSELVAQLKTQVKTLGDQVN 456

Query: 163 GLTLLVRNML 172
            ++  +  +L
Sbjct: 457 AMSTFLGQIL 466