Miyakogusa Predicted Gene

Lj0g3v0289539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0289539.1 45626_g.1
         (162 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61090.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    54   4e-08

>AT5G61090.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:24574902-24577585
           REVERSE LENGTH=657
          Length = 657

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 35  VMLHTYGSWQPGLNKIGGDGVIRDRLGRWVSGFSMEAGAVDAFKAEIVAIHMGLLHAWEL 94
           V L+  G+  P  +     G++RD+ G+WV G+     ++    A ++AI+ GL + W+ 
Sbjct: 504 VKLNIQGTSNPLSDLTRSAGIVRDQSGKWVFGYIRCHKSIPEVVAGLLAIYQGLKYLWDS 563

Query: 95  GFDEVNFYVDCSEVQQVLTNNKDVHSYWHEDGIL-QVRAVLARSWSVSVIHVHRDRNTVA 153
           GF  ++      E+   LT    +  +     +L   + ++ + W   + H+ +++N+ A
Sbjct: 564 GFRRIHLETTSFEIINALTTKSSL--FCKSKTLLGACKDMILKEWECDIYHISKEQNSCA 621

Query: 154 DALAK 158
           + LAK
Sbjct: 622 EWLAK 626