Miyakogusa Predicted Gene

Lj0g3v0288809.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288809.1 tr|A9TF63|A9TF63_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169729,44.76,7e-18,COX16,Cytochrome c oxidase assembly
protein COX16; Q4P1Z3_USTMA_Q4P1Z3;,Cytochrome c oxidase
assembl,NODE_57619_length_747_cov_41.847389.path2.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14145.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   183   2e-47

>AT4G14145.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast; Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr4:8152499-8153091
           REVERSE LENGTH=134
          Length = 134

 Score =  183 bits (464), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 96/112 (85%), Gaps = 3/112 (2%)

Query: 2   TSTVHQSQNPATSFKRWGRKSPFVRYGLPMISLTVLGSLGLAHLLQGSKDIAKVKDDQEW 61
           T T+ QS   + SFKRWGR+ PFVRYGLPMISLTV G+LGL  LLQGSKDIAKVKDDQEW
Sbjct: 23  TGTLKQS---SASFKRWGRRHPFVRYGLPMISLTVFGALGLGQLLQGSKDIAKVKDDQEW 79

Query: 62  EIIEARKALSRTGPVDAYQPKKISLEDELKVLQQKVDINDYEYKKIPKPNES 113
           EIIE RKALSRTGPVDAY+PK  S+EDELK +Q+KVDIN YEYKKIPK NES
Sbjct: 80  EIIETRKALSRTGPVDAYKPKNTSIEDELKAMQEKVDINTYEYKKIPKLNES 131