Miyakogusa Predicted Gene

Lj0g3v0288609.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288609.4 Non Chatacterized Hit- tr|I3SUJ1|I3SUJ1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,95.7,0,LRR,Leucine-rich repeat; LRR_8,NULL; U2 SMALL NUCLEAR
RIBONUCLEOPROTEIN A,NULL; no description,NULL;,CUFF.19325.4
         (280 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09760.1 | Symbols: U2A' | U2 small nuclear ribonucleoprotein...   373   e-104
AT3G50690.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...    49   4e-06

>AT1G09760.1 | Symbols: U2A' | U2 small nuclear ribonucleoprotein A
           | chr1:3159476-3161603 REVERSE LENGTH=249
          Length = 249

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/239 (78%), Positives = 211/239 (88%), Gaps = 5/239 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60
           MV+LTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDT+DLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNR+TRINPN+GEFLP LH+LVLTNNR+VNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKANYRLYVISKLKSLRVLDFKKVKNKERLEAKNLFASEEVIEKVQKTPVKTIS 180
           LDNNITKKANYRLYVI KLKSLRVLDF K+K KER EA +LF+S+E  E+V+K     +S
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKK-----VS 175

Query: 181 PGETPNVSEATEDQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDL 239
             E   VSE  E+ +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ALK G +P  L
Sbjct: 176 REEVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234


>AT3G50690.1 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr3:18835271-18837097 REVERSE LENGTH=447
          Length = 447

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 12/108 (11%)

Query: 54  IVKLENIPYLNRLGTLLINNNRVTRINPNIG-EFL-----PNLHTLVLTNNRIVNLVEID 107
           +  LE  P L  L  L++++NR+T     +G EFL      +   L L+NNRI  + ++ 
Sbjct: 60  VSSLEQFPRLGNLQKLILSDNRIT-----VGLEFLVEAGLDSFCDLDLSNNRIQFVEDLA 114

Query: 108 PLASLPKLQFLSLLDNNITKKANYRLYVISKLKSLRVLDFKKVKNKER 155
           PLA L KL  L L +  +T+  +YR  V   +K+L+ LD    +  ER
Sbjct: 115 PLAEL-KLVSLDLYECPVTRLKDYRSRVFGLIKTLKYLDKTDAEGNER 161