Miyakogusa Predicted Gene
- Lj0g3v0288399.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0288399.1 tr|G7K1M6|G7K1M6_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_5g057020 PE=4 SV=1,31.6,1e-18,seg,NULL; FBA_1,F-box
associated domain, type 1; F_box_assoc_1: F-box protein interaction
domain,F-b,CUFF.19316.1
(355 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32600.1 | Symbols: | F-box associated ubiquitination effect... 73 4e-13
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 70 2e-12
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 70 2e-12
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 69 3e-12
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 69 4e-12
AT3G10430.1 | Symbols: | F-box and associated interaction domai... 58 9e-09
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 58 1e-08
AT4G17780.1 | Symbols: | F-box and associated interaction domai... 54 2e-07
AT1G12870.1 | Symbols: | F-box and associated interaction domai... 53 3e-07
AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box asso... 52 8e-07
AT3G21120.1 | Symbols: | F-box and associated interaction domai... 51 1e-06
AT4G22390.1 | Symbols: | F-box associated ubiquitination effect... 50 2e-06
AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-32... 49 4e-06
AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-1... 49 8e-06
AT1G11270.2 | Symbols: | F-box and associated interaction domai... 48 1e-05
AT1G11270.1 | Symbols: | F-box and associated interaction domai... 48 1e-05
>AT1G32600.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:11794802-11795683 FORWARD
LENGTH=293
Length = 293
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 70 YAFDSYAATRLEYPPNYTVHSS---VIFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSPP 126
Y D T L+ +T+ + V SC G++C + + W P + F + P
Sbjct: 18 YLLDLNETTSLKLNVPFTLPAQTEPVCILSCRGVICLTRKDNNELAIWKPTSTKFKRVPM 77
Query: 127 LENIKPGYSVIETSLGFGYDRLTESYKAVKMIFDADHGLKTRVMIHTFGTSFWRRMEV-- 184
IK G + + LGFGYDR+ + YK V +I + I TF S WR ++
Sbjct: 78 ---IKRGQT--QNLLGFGYDRVLDDYKIVTII-------DKKTYIFTFKESSWRESKLIP 125
Query: 185 --DFCPVDKTGTFAYGTIYWIASVVWDSKKRFIVCLDVGKESFQELRLPKL---DDLNLT 239
D ++TGT +YWIA+ +K++FI+C D E + +L +P + + N
Sbjct: 126 SSDCFFKERTGTVVDNCMYWIANRF--NKEKFILCFDFVNEEYSKLNVPMMLSGLEFNSW 183
Query: 240 LGVLRDCLCVVSH 252
L V R LCV++H
Sbjct: 184 LDVSRGELCVINH 196
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 34/239 (14%)
Query: 93 IFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSPPLENIKPGYSVIETSL--GFGYDRLTE 150
+F S +G L + +NP TR + PP P S + G GYD +++
Sbjct: 91 VFGSSNG-LIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSD 149
Query: 151 SYKAVKMI---FDADHGLKT----RVMIHTFGTSFWRRMEVDFCPVDKTGTFAYGTIYWI 203
YK V+M+ D++ L V + + + W+R+E + F Y +Y
Sbjct: 150 DYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRR 209
Query: 204 A-------SVVWDSKKR-------FIVCLDVGKESFQELRLPKL-----DDLNLTLGVLR 244
S+ W +R IV D+ E F+ +R P+ D+ + +GVL
Sbjct: 210 GYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLD 269
Query: 245 DCLCVV-SHEQLFWDIWVIKEHG--KCWTKLFSI--PEDCSCFPLNQPHYISEDKEELL 298
CLC++ +++Q + D+W++KE+ WTK+F++ P+ F +P S+DK+++L
Sbjct: 270 GCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVL 328
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 34/239 (14%)
Query: 93 IFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSPPLENIKPGYSVIETSL--GFGYDRLTE 150
+F S +G L + +NP TR + PP P S + G GYD +++
Sbjct: 91 VFGSSNG-LIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSD 149
Query: 151 SYKAVKMI---FDADHGLKT----RVMIHTFGTSFWRRMEVDFCPVDKTGTFAYGTIYWI 203
YK V+M+ D++ L V + + + W+R+E + F Y +Y
Sbjct: 150 DYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRR 209
Query: 204 A-------SVVWDSKKR-------FIVCLDVGKESFQELRLPKL-----DDLNLTLGVLR 244
S+ W +R IV D+ E F+ +R P+ D+ + +GVL
Sbjct: 210 GYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLD 269
Query: 245 DCLCVV-SHEQLFWDIWVIKEHG--KCWTKLFSI--PEDCSCFPLNQPHYISEDKEELL 298
CLC++ +++Q + D+W++KE+ WTK+F++ P+ F +P S+DK+++L
Sbjct: 270 GCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVL 328
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 124/276 (44%), Gaps = 37/276 (13%)
Query: 93 IFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSPPLENIKPGYSVIE----TSLGFGYDRL 148
I S +G++C G V +NP T + P EN +P E + GFG+D L
Sbjct: 165 IVGSSNGLVC-ISPGEGAVFLYNPTTGDSKRLP--ENFRPKSVEYERDNFQTYGFGFDGL 221
Query: 149 TESYKAVKMIFDADHGLKTRVMIHTFGTSFWRRM-EVDFCPVD---KTGTFAYGTIYWIA 204
T+ YK VK++ ++ L V ++ WRR+ +++ D +G G I+W+
Sbjct: 222 TDDYKLVKLVATSEDILDASV--YSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVF 279
Query: 205 SVVWDSKKRFIVCLDVGKESFQELRLP-KLDDL-----NLTLGVLRDCLCVVSH-EQLFW 257
+ +R +V D+ E F+E+ +P + +D N +G L LCVV+ +
Sbjct: 280 TESR-HNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHD 338
Query: 258 DIWVIKEHG--KCWTKLFSIPEDCSCFPLNQPHYISEDKEELLPLSSFRGLVVYRRATPT 315
DIWV+ E+G K W+++ S PL D+E LL L LV+Y T
Sbjct: 339 DIWVMSEYGEAKSWSRIRINLLYRSMKPLCS---TKNDEEVLLELDG--DLVLYNFETNA 393
Query: 316 DKVTRIFYIENIKAWILPEMSYSYEPVVYTESLISP 351
I + ++S +E Y ESLISP
Sbjct: 394 SSNLGICGV---------KLSDGFEANTYVESLISP 420
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE LENGTH=360
Length = 360
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%)
Query: 77 ATRLEYPPNYT-VHSSVIFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSPPLENIKPGYS 135
+L++P + + + S CDG LC + + WNP+++ F P PG
Sbjct: 74 TNKLDFPLDQSMIDESTCVLHCDGTLC-VTLKNHTLMVWNPFSKQFKIVP-----NPGIY 127
Query: 136 VIETSLGFGYDRLTESYKAVKMIFDADHGLKTRVMIHTFGTSFW----RRMEVDFCPVDK 191
LGFGYD + + YK V I D + + F T W R D+ D+
Sbjct: 128 QDSNILGFGYDPVHDDYKVVTFIDRLD---VSTAHVFEFRTGSWGESLRISYPDWHYRDR 184
Query: 192 TGTFAYGTIYWIASVVWDSKKRFIVCLDVGKESFQELRLPKLDDLNLT--LGVLRDCLCV 249
GTF +YWIA S RFI+C ++ +++L LP + + LGV LC+
Sbjct: 185 RGTFLDQYLYWIA--YRSSADRFILCFNLSTHEYRKLPLPVYNQGVTSSWLGVTSQKLCI 242
Query: 250 VSHEQLFWDIWV-IKEHGKCWTKLFSI 275
+E +I + + E W+K+ S+
Sbjct: 243 TEYEMCKKEIRISVMEKTGSWSKIISL 269
>AT3G10430.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:3242750-3243862
REVERSE LENGTH=370
Length = 370
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 24/160 (15%)
Query: 84 PNYTVHSSVIFSSCDGILCSYCF---GSR-IVQAWNPWTRTFVKSPPLENIKPGYSVI-- 137
PN H CDG++ C+ GS + WNP R ++ IKP ++
Sbjct: 79 PNELRHKYFTLIHCDGLMLGMCYEELGSDPNLAVWNPVMRK------IKWIKPSPPLVCY 132
Query: 138 --ETSLGFGYDR-LTESYKAVKMIF---DADHGLKTRVMIHTFGTSFWRRMEVDF---CP 188
LGFGYD+ ++YK ++ + D D + I+ F + WR +E F
Sbjct: 133 WGSDYLGFGYDKTFRDNYKILRFTYLGDDDDDESYPKCQIYEFNSGSWRSIEAKFDGEID 192
Query: 189 VDKTGTFAYGTIYWIASVVWDSKKRFIVCLDVGKESFQEL 228
V+ G G++YWI KK FI+ D KE+F +
Sbjct: 193 VEVDGVSVNGSMYWIE---LQEKKNFILSFDFSKETFNRI 229
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 93 IFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSPPLENIKPGYSVIETSLGFGYDRLTESY 152
+ +C G++C + + + WNP T + +++ + GFGYD + Y
Sbjct: 112 VVGTCHGLVCFHVDYDKSLYLWNP-TIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDY 170
Query: 153 KAVKMIFDADHGLKTRVMIHTFGTSFWRRME-----VDFCPVDKTGTFAYGTIYWIASVV 207
K V ++ H +K I++ WR V ++G + GT+ W A+
Sbjct: 171 KVVALL-QQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSS 229
Query: 208 WDSKKRFIVCLDVGKESFQELRLP---KLDDLNLTLGVLRDCLCVVSH-EQLFWDIWVIK 263
S I+ D+ ++ F+EL P +TLG LR CL +V + + D+WV+K
Sbjct: 230 --SSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMK 287
Query: 264 EHGK--CWTKLFSIPEDCSCFPLNQPHYISEDKEELLPLSSFRGLVVYR 310
E G+ W+KL SIP +P +IS+ LL S GL +Y
Sbjct: 288 EFGEVYSWSKLLSIP---GLTDFVRPLWISDGLVVLLEFRS--GLALYN 331
>AT4G17780.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:9880259-9881455
REVERSE LENGTH=398
Length = 398
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 20/196 (10%)
Query: 96 SCDGILCSYCFGSRIVQAWNPWTRTFVKSP----PLENIKPGYSVIETSLGFGYDRLTES 151
+CDG++C R + NPWTR + + + +S ++GFG D++T S
Sbjct: 102 TCDGLVC--ILEPRWIDVLNPWTRQLRRYGFGFGTIFGVGSAFSPRHWAMGFGKDKVTGS 159
Query: 152 YKAVKMIFDADHGLKTR-----VMIHTFGTSFWRRMEVDFCPV--DKTGTFAYGTIYWIA 204
YK VKM + + R + T WR + V + A G+IYW+
Sbjct: 160 YKVVKMCLISFSEICARDPEVEYSVLDVETGEWRMLSPPPYKVFEVRKSECANGSIYWLH 219
Query: 205 SVVWDSKKRFIVCLDVGKESFQELRLPKLDDLNLTLGV--LRDCLCVV-SHEQLFW--DI 259
+ I+ LD+ KE + +P + T + L D L + ++ + W +I
Sbjct: 220 KPT--ERAWTILALDLHKEELHNISVPDMSVTQETFQIVNLEDRLAIANTYTKTEWKLEI 277
Query: 260 WVIKEHGKCWTKLFSI 275
W + + WTK +SI
Sbjct: 278 WSMDTEVETWTKTYSI 293
>AT1G12870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:4387129-4389110
REVERSE LENGTH=416
Length = 416
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 96 SCDGILCSYCFGSRIVQAWNPWTRTFVKSPP------LENIKPGYSVIETSLGFGYDRLT 149
SCDGI C + ++ + NP TR F + PP + + P + + +
Sbjct: 133 SCDGIFCIHSPKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFV 192
Query: 150 ES--YKAVKMIFDADHGLKTRVMIHTFGTSFWRRMEVDFCPV-----DKTGTFAYGTIYW 202
++ YK V ++++D T+ + F + WR + P D+ A GT+YW
Sbjct: 193 KATDYKLV-WLYNSDASRVTKCEVFDFKANAWRYLTC--IPSYRIYHDQKPASANGTLYW 249
Query: 203 IASVVWDSKKRFIVCLDVGKESFQELRLPKL----DDLNLTLGVLRDCLCVVSHE---QL 255
K ++ LD+ E F+ L P L + ++ + ++ + LC+ E ++
Sbjct: 250 FTETYNAEIK--VIALDIHTEIFRLLPKPSLIASSEPSHIDMCIIDNSLCMYETEGDKKI 307
Query: 256 FWDIWVIKEHGKCWTKLFSI 275
+IW +K W K+++I
Sbjct: 308 IQEIWRLKSSEDAWEKIYTI 327
>AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box
associated interaction domain (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G71320.1); Has 422 Blast hits to 419
proteins in 26 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). |
chr3:23083609-23084852 REVERSE LENGTH=325
Length = 325
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 20/210 (9%)
Query: 84 PNYTVHSSV--IFSSCDGILCSYCFGSRIVQAWNPWTRTF-VKSPPLENIKPGYSV---- 136
P Y+ + +V I C+GI+C Y G + NP TR + SP G +
Sbjct: 63 PKYSTYDTVGQIMGYCNGIVCIYDLG--YIYLINPATRKLRILSPEFLREYTGRTGWSND 120
Query: 137 IETSLGFGYDRLTESYKAVKMIFDADHGLKTRVMIHTFGTSFWRRMEVDFCPV--DKTGT 194
+ ++GFG D +T +YK + M + +KT + G + + + + DK
Sbjct: 121 LPINVGFGRDMVTGTYKVILMYLFDRNFVKTEALNLKNGERRYVYFPISYGQLGNDKRSI 180
Query: 195 FAYGTIYWIASVVWD---SKKRFIVCLDVGKESFQELRLPKLDD---LNLTLGVLRDCLC 248
FA G++YW+ D ++ + +D+ E+F+ + LP ++ L L+D LC
Sbjct: 181 FANGSLYWLPKPDVDFYTNQLIKLAAIDLHTETFRYVPLPSWYTKYCKSVYLWSLKDSLC 240
Query: 249 VVSHEQL-FWDIWVIKEHGKC--WTKLFSI 275
V Q D+W +++ W K+FS+
Sbjct: 241 VSDVLQNPSVDVWSLQQEEPSVKWEKMFSV 270
>AT3G21120.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:7406326-7407429
FORWARD LENGTH=367
Length = 367
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 97 CDGILCSYCFGSRIVQAWNPWTRTFVKSPPLENIKPGYSVIETSL-GFGYDRLTESYKAV 155
CDG+L C R + WNP S + I+P S E+ L GYD + SYK +
Sbjct: 108 CDGLLLC-CTKDRRLVVWNPC------SGETKWIQPRNSYKESDLYALGYDNRSSSYKIL 160
Query: 156 KMIFDADHGLKTRVMIHTFGTSFWRRMEV--DF--CPVDKTGTFAYGTIYWIA-SVVW-- 208
+M + ++ F + WR + V DF + G GT YW A S W
Sbjct: 161 RM-HPVGNPFHIESEVYDFASHSWRSVGVTTDFHIQTNESYGMNVKGTTYWFALSKDWWS 219
Query: 209 DSKKRFIVCLDVGKESFQELRLPKLDDLNLTLGVLRDCLCVVSHEQ 254
+RF++ D +E FQ L LP D NL L V+ L V EQ
Sbjct: 220 SDDRRFLLSFDFSRERFQCLPLPA-DVKNLHLTVV---LSVTREEQ 261
>AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813757-11815074 REVERSE
LENGTH=402
Length = 402
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 38/239 (15%)
Query: 93 IFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSP--PLENIKPGYSVIETSLGFGYDRLTE 150
+F S +G++ C + +NP TR + P P++ + + G GYD + +
Sbjct: 91 VFGSFNGVI-GLCNSPVDLAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGD 149
Query: 151 SYKAVKMIF-DADHGLK-----TRVMIHTFGTSFWRRMEVDF-------------CPVDK 191
+K V+++ G K V + + + W+R+ + F P
Sbjct: 150 DFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRG 209
Query: 192 TGTFAYGTIYWI-----ASVVWDSKKRF-IVCLDVGKESF-QELRLPKLDDLNLTLGVLR 244
G ++WI + +++ ++ + D+G SF QEL + N+ +GVL
Sbjct: 210 YGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIED----NMDIGVLD 265
Query: 245 DCLCVVSHEQL-FWDIWVIKEHG--KCWTKLFSI--PEDCSCFPLNQPHYISEDKEELL 298
C+C++ +++ D+WV+KE+ K WTKL+ + PE +P S+D+ ++L
Sbjct: 266 GCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKIL 324
>AT5G10340.1 | Symbols: | F-box family protein |
chr5:3253122-3255045 FORWARD LENGTH=445
Length = 445
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 21/204 (10%)
Query: 92 VIFSSCDGILCSYCF---GSRIVQAWNPWTRTFVK-SPPLENIKPG-----YSVIETSLG 142
V +SCDG++C + F S +V W RTF K + L G + V + G
Sbjct: 172 VCNTSCDGLICLFSFYELPSIVVNPTTRWHRTFPKCNYQLVAADKGERHECFKVACPTPG 231
Query: 143 FGYDRLTESYKAVKMIFDADHGLK---TRVMIHTFGTSFWRRM---EVDFCPVDKTGTFA 196
FG D+++ +YK V + A+ L T + F T+ WR + + +
Sbjct: 232 FGKDKISGTYKPVWLYNSAELDLNDKPTTCEVFDFATNAWRYVFPASPHLILHTQDPVYV 291
Query: 197 YGTIYWIASVVWDSKKRFIVCLDVGKESFQEL-RLPKL---DDLNLTLGVLRDCLCVVSH 252
G+++W ++ + + ++ LD+ E+FQ + + P L D+ + + L D LCV
Sbjct: 292 DGSLHWFTALSHEGET-MVLSLDLHSETFQVISKAPFLNVSDEYYIVMCNLGDRLCVSEQ 350
Query: 253 EQLFWDIWVIKEHG-KCWTKLFSI 275
+ IW + + K W +++SI
Sbjct: 351 KWPNQVIWSLDDSDHKTWKQIYSI 374
>AT1G33530.1 | Symbols: | F-box family protein |
chr1:12159884-12161314 FORWARD LENGTH=441
Length = 441
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 32/183 (17%)
Query: 96 SCDGILCSYCFGSRIVQAWNPWTR-TFVKSPPLENIKPGYSVIETSLGFGYDRLTESYKA 154
SC+G++C Y S + NP T T +PP + S+GFG D +T +YK
Sbjct: 189 SCNGLVCVYELDSVYIYLLNPMTGVTRTLTPPRGT--------KLSVGFGIDVVTGTYK- 239
Query: 155 VKMIFDADHGLKTRVMIHTFGTSFWRRMEVDFCPV--------DKTGTFAYGTIYWIASV 206
V +++ D + ++ T+ WR+ P+ ++ F G+++W+ +
Sbjct: 240 VMVLYGFD---RVGTVVFDLDTNKWRQRYKTAGPMPLSCIPTPERNPVFVNGSLFWLLAS 296
Query: 207 VWDSKKRFIVCLDVGKESFQELRLPK-LDDLNLTLG-----VLRDCLCVVSHEQ-LFWDI 259
+ I+ +D+ E F+ L P +DD++++ G L D LCV + Q L +
Sbjct: 297 DFSE----ILVMDLHTEKFRTLSQPNDMDDVDVSSGYIYMWSLEDRLCVSNVRQGLHSYV 352
Query: 260 WVI 262
WV+
Sbjct: 353 WVL 355
>AT1G11270.2 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:3785715-3786653
REVERSE LENGTH=312
Length = 312
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 35/223 (15%)
Query: 66 YPVGYAFDSYAATRLEYPPNYTVHSSVIFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSP 125
Y F S + +P T+H+ + + SC+G++C YC S + NP T+ + +S
Sbjct: 99 YGRKAVFGSSIVSTFRFP---TLHTLICYGSCEGLICIYCVYSPNIVV-NPATK-WHRSC 153
Query: 126 PLENI---------KPGYSVIETSLGFGYDRLTESYKAVKMIFDADHGLK--TRVMIHTF 174
PL N+ K Y L FG D+L +YK V + ++ L T + F
Sbjct: 154 PLSNLQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFRLDDVTTCEVFDF 213
Query: 175 GTSFWRRMEVDFCPVD-------KTGTFAYGTIYWIASVVWDSKKRFIVCLDVGKESFQE 227
+ WR + P + ++ G+++W+ + K+ I+ + E+FQ
Sbjct: 214 SNNAWRYVH----PASPYRINDYQDPVYSDGSVHWLT----EGKESKILSFHLHTETFQV 265
Query: 228 L----RLPKLDDLNLTLGVLRDCLCVVSHEQLFWDIWVIKEHG 266
L L + D + ++ +L + LCV IW + G
Sbjct: 266 LCEAPFLRERDPVGDSMCILDNRLCVSEINGPAQLIWSLDSSG 308
>AT1G11270.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:3785715-3786653
REVERSE LENGTH=312
Length = 312
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 35/223 (15%)
Query: 66 YPVGYAFDSYAATRLEYPPNYTVHSSVIFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSP 125
Y F S + +P T+H+ + + SC+G++C YC S + NP T+ + +S
Sbjct: 99 YGRKAVFGSSIVSTFRFP---TLHTLICYGSCEGLICIYCVYSPNIVV-NPATK-WHRSC 153
Query: 126 PLENI---------KPGYSVIETSLGFGYDRLTESYKAVKMIFDADHGLK--TRVMIHTF 174
PL N+ K Y L FG D+L +YK V + ++ L T + F
Sbjct: 154 PLSNLQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFRLDDVTTCEVFDF 213
Query: 175 GTSFWRRMEVDFCPVD-------KTGTFAYGTIYWIASVVWDSKKRFIVCLDVGKESFQE 227
+ WR + P + ++ G+++W+ + K+ I+ + E+FQ
Sbjct: 214 SNNAWRYVH----PASPYRINDYQDPVYSDGSVHWLT----EGKESKILSFHLHTETFQV 265
Query: 228 L----RLPKLDDLNLTLGVLRDCLCVVSHEQLFWDIWVIKEHG 266
L L + D + ++ +L + LCV IW + G
Sbjct: 266 LCEAPFLRERDPVGDSMCILDNRLCVSEINGPAQLIWSLDSSG 308