Miyakogusa Predicted Gene

Lj0g3v0288079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288079.1 Non Chatacterized Hit- tr|I3SY62|I3SY62_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,40,0.00000000005,seg,NULL,CUFF.19249.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11090.1 | Symbols:  | serine-rich protein-related | chr5:352...    63   4e-11
AT5G25280.2 | Symbols:  | serine-rich protein-related | chr5:877...    59   8e-10
AT5G25280.1 | Symbols:  | serine-rich protein-related | chr5:877...    59   8e-10
AT5G20370.1 | Symbols:  | serine-rich protein-related | chr5:688...    48   1e-06

>AT5G11090.1 | Symbols:  | serine-rich protein-related |
           chr5:3524796-3525449 FORWARD LENGTH=217
          Length = 217

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 13/89 (14%)

Query: 15  CMCSPTTHPGSFRCSMHKN----RPRSVLPRNTSNYNPHRS---------DSSKANSLKA 61
           CMCSPTTHPGSFRCS+HKN      +      T+  N  RS            +   ++ 
Sbjct: 123 CMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRR 182

Query: 62  ILLQIIKPSNQDLHRRKNFQPKPTRFYLM 90
            L  +I+PS+  L RR  +QP+P+R  +M
Sbjct: 183 ALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211


>AT5G25280.2 | Symbols:  | serine-rich protein-related |
           chr5:8773882-8774544 FORWARD LENGTH=220
          Length = 220

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 15  CMCSPTTHPGSFRCSMHKN----RPRSVLPRNTSNYNPHRS---------DSSKANSLKA 61
           CMCSPTTHPGSFRCS+HKN      +      T+  N  RS            +   ++ 
Sbjct: 126 CMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRR 185

Query: 62  ILLQIIKPSNQDLHRRKNFQPKPTRFYLMNSNTD 95
            L  +I+PS+  L RR  ++P+ +R   M+   D
Sbjct: 186 ALTTLIRPSSHQLKRRSAYEPRRSRLASMSKAED 219


>AT5G25280.1 | Symbols:  | serine-rich protein-related |
           chr5:8773882-8774544 FORWARD LENGTH=220
          Length = 220

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 15  CMCSPTTHPGSFRCSMHKN----RPRSVLPRNTSNYNPHRS---------DSSKANSLKA 61
           CMCSPTTHPGSFRCS+HKN      +      T+  N  RS            +   ++ 
Sbjct: 126 CMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRR 185

Query: 62  ILLQIIKPSNQDLHRRKNFQPKPTRFYLMNSNTD 95
            L  +I+PS+  L RR  ++P+ +R   M+   D
Sbjct: 186 ALTTLIRPSSHQLKRRSAYEPRRSRLASMSKAED 219


>AT5G20370.1 | Symbols:  | serine-rich protein-related |
           chr5:6886931-6887458 REVERSE LENGTH=175
          Length = 175

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 27/101 (26%)

Query: 15  CMCSPTTHPGSFRCSMH--------KNRPRSVLPRNTSNYNPHRSDS------------- 53
           C+CSPTTHPGSFRCS H        K    S + RN    N  R +              
Sbjct: 71  CLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMNSL 130

Query: 54  SKANSLKA------ILLQIIKPSNQDLHRRKNFQPKPTRFY 88
           +K  S++A      +   + KPS+   HRR  F+P+ +RF+
Sbjct: 131 AKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRFH 171