Miyakogusa Predicted Gene

Lj0g3v0287739.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0287739.3 tr|G7KPS9|G7KPS9_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_6g0,71.11,0.0000000008, ,CUFF.19230.3
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76280.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    48   1e-06
AT1G76280.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    48   1e-06
AT1G76280.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    48   1e-06

>AT1G76280.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28617948-28622581 REVERSE
           LENGTH=801
          Length = 801

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 30/45 (66%)

Query: 33  QQQVVDALCSGERKKASDLLLDFGYRSRSLKADDFVGILNYCARS 77
           Q Q+VDAL SGER+ AS LL      + SL ADDF  IL YCARS
Sbjct: 65  QLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARS 109


>AT1G76280.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28617948-28622581 REVERSE
           LENGTH=773
          Length = 773

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 30/45 (66%)

Query: 33  QQQVVDALCSGERKKASDLLLDFGYRSRSLKADDFVGILNYCARS 77
           Q Q+VDAL SGER+ AS LL      + SL ADDF  IL YCARS
Sbjct: 65  QLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARS 109


>AT1G76280.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28618365-28622581 REVERSE
           LENGTH=693
          Length = 693

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 30/45 (66%)

Query: 33  QQQVVDALCSGERKKASDLLLDFGYRSRSLKADDFVGILNYCARS 77
           Q Q+VDAL SGER+ AS LL      + SL ADDF  IL YCARS
Sbjct: 65  QLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARS 109