Miyakogusa Predicted Gene

Lj0g3v0287459.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0287459.2 CUFF.19209.2
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15380.1 | Symbols:  | Plasma-membrane choline transporter fa...   578   e-165

>AT3G15380.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr3:5193319-5196435 FORWARD LENGTH=700
          Length = 700

 Score =  578 bits (1490), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/375 (76%), Positives = 336/375 (89%), Gaps = 1/375 (0%)

Query: 1   MGGDNINKDILIDKSIHKAINSRSAVLKRYMADIGKAWPVLIVCGGILPLFLSVIWLMMI 60
           MGG NI +D++IDKSI +++NSR++VLKRY+ADIGK+WPVLIVCGG++PLFLS+IWL++I
Sbjct: 203 MGGVNIQEDMIIDKSIRRSMNSRASVLKRYVADIGKSWPVLIVCGGLVPLFLSIIWLLLI 262

Query: 61  RHFVAAMPWITVVLFNVLMISVTMFYYLKAGWIGNDAISPIIGEHDPYINVFGRELSHLR 120
           RHFVAAMPWITVVLFN+L+ISVT+FYYLKAGWIGNDA++PIIGEHDPY +V+GREL+H+R
Sbjct: 263 RHFVAAMPWITVVLFNMLLISVTVFYYLKAGWIGNDAVTPIIGEHDPYFHVYGRELTHVR 322

Query: 121 VVTVLMTFITVVAILTSIAIVRRILMATSVLKVAAKVIGEVQALIIFPLIPYGILAVFYM 180
            V +LMTFI+VVAILTSIAI+RRILMATSVLKVAAKVIGEVQALIIFP IP+ +LA+FYM
Sbjct: 323 GVAILMTFISVVAILTSIAIIRRILMATSVLKVAAKVIGEVQALIIFPAIPFAMLAIFYM 382

Query: 181 FWISAALHLFSSGQIVQ-NDCNSNCCTYDLMAKRVNCDRCCGYSIKYTPHIGVSILFHLF 239
           FWISAALHLFSSGQ+VQ N  N+NCC YDL+ K+VNCDRCCGYSI YTPHI ++I FHLF
Sbjct: 383 FWISAALHLFSSGQVVQNNCNNTNCCAYDLVLKKVNCDRCCGYSIHYTPHITIAIFFHLF 442

Query: 240 GGYWATQFFIASSSTVIAGSVACYYWAHGETSPEVPFLSVFSSMKRLMRYSLGSVALGSL 299
           G YWATQFFIASS+TVIAGSVA YYWA GE SPE+PFL VF+SMKRL RY+LGSVALGSL
Sbjct: 443 GCYWATQFFIASSATVIAGSVASYYWAQGEASPEIPFLPVFASMKRLARYNLGSVALGSL 502

Query: 300 IVSFVESIRFLLESMRRKLKVSSHGYGSWIGNALYQSSQCFLRCIEWTIKSVNRNAYIMI 359
           IVSFVES+RF+LE++RRK KVS      W     + +S+  L+ +EWTIKSVNRNAYIMI
Sbjct: 503 IVSFVESVRFILEAIRRKTKVSGTIPDHWFWRMAHYTSRGCLKSVEWTIKSVNRNAYIMI 562

Query: 360 AITGKSFCSASSIAT 374
           AITGKSFC +S+IAT
Sbjct: 563 AITGKSFCKSSAIAT 577