Miyakogusa Predicted Gene

Lj0g3v0287449.2
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0287449.2 Non Chatacterized Hit- tr|F6H257|F6H257_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,61.95,0,TPR-like,NULL; PPR,Pentatricopeptide repeat;
PPR_3,Pentatricopeptide repeat; coiled-coil,NULL; PPR: ,CUFF.19266.2
         (504 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21705.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   471   e-133
AT2G20710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   294   1e-79
AT1G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   272   3e-73
AT4G02820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   270   2e-72
AT1G60770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   263   2e-70
AT5G27460.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   256   3e-68
AT1G02370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   241   7e-64
AT4G01990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   235   5e-62
AT2G20710.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   233   2e-61
AT1G28020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   210   2e-54
AT1G80270.3 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 | c...   174   1e-43
AT1G80270.2 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 | c...   174   1e-43
AT1G80270.1 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 | c...   174   1e-43
AT5G09450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   166   4e-41
AT1G15480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   159   4e-39
AT3G15590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   145   9e-35
AT3G11380.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   122   6e-28
AT1G28000.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   110   2e-24
AT1G07590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    98   1e-20
AT1G43010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    97   2e-20
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...    93   3e-19
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    89   8e-18
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   4e-17
AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    86   8e-17
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    85   1e-16
AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    84   3e-16
AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    84   3e-16
AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    83   3e-16
AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    83   4e-16
AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    82   6e-16
AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    82   6e-16
AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    82   1e-15
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ...    82   1e-15
AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    82   1e-15
AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    82   1e-15
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    82   1e-15
AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    80   3e-15
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   3e-15
AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   3e-15
AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   3e-15
AT1G10910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    80   4e-15
AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    79   6e-15
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    79   7e-15
AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   8e-15
AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   1e-14
AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    78   1e-14
AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   2e-14
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su...    77   3e-14
AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    77   3e-14
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...    77   4e-14
AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    76   5e-14
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720...    76   7e-14
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931...    75   8e-14
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    75   1e-13
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    74   2e-13
AT3G11350.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    74   2e-13
AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    74   2e-13
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...    74   3e-13
AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    73   4e-13
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381...    73   5e-13
AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    72   7e-13
AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   7e-13
AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   8e-13
AT3G53170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   9e-13
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    72   1e-12
AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   1e-12
AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   1e-12
AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    71   1e-12
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   1e-12
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   1e-12
AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    71   2e-12
AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   2e-12
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   2e-12
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   3e-12
AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   3e-12
AT5G21222.1 | Symbols:  | protein kinase family protein | chr5:7...    70   3e-12
AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   4e-12
AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   5e-12
AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    69   5e-12
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   6e-12
AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    69   8e-12
AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    68   1e-11
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) ...    68   1e-11
AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    68   1e-11
AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   1e-11
AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   2e-11
AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    68   2e-11
AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   2e-11
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...    68   2e-11
AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    67   2e-11
AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   2e-11
AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   2e-11
AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    67   3e-11
AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   3e-11
AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    67   3e-11
AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   4e-11
AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   4e-11
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   4e-11
AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   4e-11
AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   4e-11
AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat (TPR)-...    66   5e-11
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    66   5e-11
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   6e-11
AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   6e-11
AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   7e-11
AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repea...    66   7e-11
AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    66   7e-11
AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   1e-10
AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   1e-10
AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   1e-10
AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   1e-10
AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   3e-10
AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   3e-10
AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   3e-10
AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   3e-10
AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   4e-10
AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   5e-10
AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    63   5e-10
AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   5e-10
AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   5e-10
AT1G08610.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   5e-10
AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   5e-10
AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   6e-10
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   6e-10
AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (...    62   7e-10
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    62   8e-10
AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   9e-10
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ...    62   1e-09
AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   1e-09
AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   1e-09
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    62   1e-09
AT5G48730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   1e-09
AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    61   2e-09
AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    61   2e-09
AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    61   2e-09
AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   3e-09
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   3e-09
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   3e-09
AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    60   3e-09
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ...    60   3e-09
AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   3e-09
AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-09
AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    60   4e-09
AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   4e-09
AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   5e-09
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   5e-09
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   5e-09
AT1G55890.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   6e-09
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ...    59   6e-09
AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   6e-09
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su...    59   7e-09
AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat (TPR)-...    59   7e-09
AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   8e-09
AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   8e-09
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr...    59   1e-08
AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   1e-08
AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   1e-08
AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    58   2e-08
AT1G11900.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   2e-08
AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT2G20720.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    58   2e-08
AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   2e-08
AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   2e-08
AT4G20740.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    57   3e-08
AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   3e-08
AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   3e-08
AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   4e-08
AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   4e-08
AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   5e-08
AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   5e-08
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su...    56   5e-08
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup...    56   6e-08
AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   6e-08
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   6e-08
AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   7e-08
AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   8e-08
AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   8e-08
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li...    55   9e-08
AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   9e-08
AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT1G19520.1 | Symbols: NFD5 | pentatricopeptide (PPR) repeat-con...    54   2e-07
AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   2e-07
AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   2e-07
AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li...    54   3e-07
AT4G16390.1 | Symbols: SVR7 | pentatricopeptide (PPR) repeat-con...    54   4e-07
AT2G15980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   4e-07
AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   5e-07
AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   5e-07
AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    53   6e-07
AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   6e-07
AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   7e-07
AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   7e-07
AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   8e-07
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su...    52   8e-07
AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   9e-07
AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   1e-06
AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   1e-06
AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   1e-06
AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   2e-06
AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   2e-06
AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   2e-06
AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   2e-06
AT4G01570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   3e-06
AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   3e-06
AT3G15200.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   4e-06
AT2G17670.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   4e-06
AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-lik...    50   4e-06
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li...    50   4e-06
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) su...    50   4e-06
AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   5e-06
AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   5e-06
AT3G13160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   6e-06
AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   8e-06
AT2G30780.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   8e-06

>AT4G21705.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11533257-11534817 REVERSE
           LENGTH=492
          Length = 492

 Score =  471 bits (1211), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/471 (49%), Positives = 319/471 (67%), Gaps = 2/471 (0%)

Query: 33  TVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQ 92
           T  + +  LYS+ISPLGDP  SV P L+NW+Q G  V   EL RIV  LR RKRF  AL+
Sbjct: 19  TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALE 78

Query: 93  VSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVM 152
           VS+WM+  G+C   P + AV L+LIGRV G  +AE YF+NL +  K +K +GALLNCYV 
Sbjct: 79  VSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVR 138

Query: 153 AGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
             +V+KSL   +KMK+MGFV S L YNNIM LYT   QHEKVP VL  MKE+ V+PD +S
Sbjct: 139 QQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYS 198

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           YRIC+N++GA  DLE +   L  +E   DI +DW TY+  A FY+  G  D+A+  LK  
Sbjct: 199 YRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMS 258

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDL 331
           E++  K+D   YNH+I+ YA LGKK +++RLW L+KD CK+++N++Y+T+L  LVK+  L
Sbjct: 259 ENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDAL 318

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
            EAE++L +W+ SGN YDF+VPN ++ GY  K + EKAE ML  +  +GK  TP SW ++
Sbjct: 319 VEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELV 378

Query: 392 ASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
           A+ +  K  +E AF+C K AL V   ++ WRP   +V+S+LSWV D   ++EVE FV SL
Sbjct: 379 ATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASL 438

Query: 452 KKVMSMNRDMYLSLIKLYVR-CGREVDGVLESMKADNIELDEEMEEILNSR 501
           +  + +N+ MY +L+K  +R  GR +D +L+ MK D IE+DEE   IL++R
Sbjct: 439 RNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILSTR 489


>AT2G20710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8926110-8927722 FORWARD
           LENGTH=490
          Length = 490

 Score =  294 bits (752), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 266/460 (57%), Gaps = 20/460 (4%)

Query: 9   ILRNKF--HSFTATFQLLRPYCSASTTVTINRRNLYSRISPLGDPSLSVVPVLENWLQEG 66
           ILR  F  HS   T   L PY +           L  R++  GDPS S++ VL+ WL +G
Sbjct: 17  ILRRSFLFHSGKTTPSPLDPYDT-----------LQRRVARSGDPSASIIKVLDGWLDQG 65

Query: 67  HAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESA 126
           + V+  EL  I+K LR   RF+ ALQ+S+WMS   +  I  GD A++L+LI +V GL  A
Sbjct: 66  NLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEA 125

Query: 127 ESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP-LHYNNIMSLYT 185
           E +F+ +    +   ++GALLNCY     + K+    Q+MK++GF+   L YN +++LY 
Sbjct: 126 EKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYV 185

Query: 186 RTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDW 245
           RT ++  V  +L  M+++ V PDIF+    L++Y   SD+E MEK L + E +  + +DW
Sbjct: 186 RTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDW 245

Query: 246 MTYSTVANFYVKAGLKDKALIYLKKCED--KAYKRDAVAYNHMISHYASLGKKKDMMRLW 303
            TY+  AN Y+KAGL +KAL  L+K E    A KR   AY  ++S Y + GKK+++ RLW
Sbjct: 246 RTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKH-AYEVLMSFYGAAGKKEEVYRLW 304

Query: 304 KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRK 363
            L K+      N  YI+++  L+K+ D+EE EK++ +WE   + +D ++P++L+ GY +K
Sbjct: 305 SLYKE-LDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKK 363

Query: 364 GLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRP 423
           G++EKAE ++  +V K +    ++W  +A G+     MEKA + +K A+ V     GWRP
Sbjct: 364 GMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIEV--SKPGWRP 421

Query: 424 KSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYL 463
              V+ S + ++   RD+E +   +  L +   ++ D  L
Sbjct: 422 HQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYDQLL 461


>AT1G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:408779-410433 FORWARD
           LENGTH=524
          Length = 524

 Score =  272 bits (696), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 263/465 (56%), Gaps = 14/465 (3%)

Query: 41  LYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSK 100
           +Y +IS +  P L    VL  W + G  +   EL R+VK LR  KR  QAL+V +WM+++
Sbjct: 69  IYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNR 128

Query: 101 G-LCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKS 159
           G    +   D A+QL+LIG+VRG+  AE +F  L ++ K  +V+G+LLN YV A S +K+
Sbjct: 129 GERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKA 188

Query: 160 LSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNS 218
            + +  M+D G+ + PL +N +M+LY    +++KV  ++  MK+  +  DI+SY I L+S
Sbjct: 189 EALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSS 248

Query: 219 YGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKR 278
            G+   +E ME + ++++++  I  +W T+ST+A  Y+K G  +KA   L+K E +   R
Sbjct: 249 CGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGR 308

Query: 279 DAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLL 338
           + + Y++++S Y SLG KK++ R+W + K       N  Y  ++  LV++GD+E AEK+ 
Sbjct: 309 NRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVY 368

Query: 339 GQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAK 398
            +W    ++YD ++PN+L+  Y +   +E AE +   MV+ G  P+ ++W I+A GH  K
Sbjct: 369 EEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRK 428

Query: 399 ENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMN 458
             + +A  C + A +    +  WRPK  ++S       +  D+   E  +  L++   + 
Sbjct: 429 RCISEALTCLRNAFSAEG-SSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLE 487

Query: 459 RDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEMEEILNSRLQ 503
              YL+LI        +VD   E+   +N E+D    + L ++LQ
Sbjct: 488 DKSYLALI--------DVD---ENRTVNNSEIDAHETDALLTQLQ 521


>AT4G02820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:1258581-1260265 FORWARD
           LENGTH=532
          Length = 532

 Score =  270 bits (689), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 259/467 (55%), Gaps = 6/467 (1%)

Query: 33  TVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQ 92
           TV   R  L  R+  L     S V  +  W +EGH+VR  EL RIV+ LR  KR+  AL+
Sbjct: 55  TVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALE 114

Query: 93  VSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVM 152
           + EWM  +    +  GD AV L+LI ++RGL SAE +F+++ D  +      +LL+ YV 
Sbjct: 115 ICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQ 174

Query: 153 AGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
               DK+ +  +KM + GF+ S L YN+++S+Y    Q EKVP ++  +K    SPDI +
Sbjct: 175 NKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVT 233

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y + L ++ + +D+E  EK+  K + E  +  DW+TYS + N Y K    +KA + LK+ 
Sbjct: 234 YNLWLTAFASGNDVEGAEKVYLKAKEE-KLNPDWVTYSVLTNLYAKTDNVEKARLALKEM 292

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDL 331
           E    K++ VAY  +IS +A+LG K  +   WK  K + KK  + EY++M+  +VKLG+ 
Sbjct: 293 EKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEF 352

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           E+A+ L  +WE    T D ++PN++L  Y  +  +   E     +V+KG  P+ ++W I+
Sbjct: 353 EQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEIL 412

Query: 392 ASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
              ++ +++MEK   CF +A+  +   K W     +V      + +  +++  E  +  L
Sbjct: 413 TWAYLKRKDMEKVLDCFGKAIDSV---KKWTVNVRLVKGACKELEEQGNVKGAEKLMTLL 469

Query: 452 KKVMSMNRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEMEEIL 498
           +K   +N  +Y SL++ Y + G     V E M  DN+ELDEE +E++
Sbjct: 470 QKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELI 516


>AT1G60770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:22366959-22368648 REVERSE
           LENGTH=491
          Length = 491

 Score =  263 bits (673), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 262/462 (56%), Gaps = 4/462 (0%)

Query: 41  LYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSK 100
           LY+R+   G   + V   L  +L+    V   E+   +K LR R  +  AL++SE M  +
Sbjct: 25  LYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEER 84

Query: 101 GLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSL 160
           G+   +  D+A+ L+L+ + R + + E+YF +L ++ KTE  +G+LLNCY      +K+ 
Sbjct: 85  GMNKTV-SDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAE 143

Query: 161 SQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSY 219
             + KMK++    S + YN++M+LYT+T + EKVP ++  +K + V PD ++Y + + + 
Sbjct: 144 GLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRAL 203

Query: 220 GARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRD 279
            A +D+  +E+++E++  +G +A DW TYS +A+ YV AGL  KA   L++ E K  +RD
Sbjct: 204 AATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRD 263

Query: 280 AVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLG 339
             AY  +I+ Y  LGK  ++ R+W+  +    K  N  Y+ M+  LVKL DL  AE L  
Sbjct: 264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323

Query: 340 QWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKE 399
           +W+ + +TYD ++ N+L+  Y+++GLI+KA  +      +G      +W I    +V   
Sbjct: 324 EWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSG 383

Query: 400 NMEKAFQCFKEALAVLAENKG-WRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKK-VMSM 457
           +M +A +C  +A+++   + G W P  + V +++S+    +D+   E+ +  LK    ++
Sbjct: 384 DMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNI 443

Query: 458 NRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEMEEILN 499
             +++  LI+ Y   G+    +   +K +N+E++E  +++L+
Sbjct: 444 GAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLLD 485


>AT5G27460.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:9693262-9694815 REVERSE
           LENGTH=491
          Length = 491

 Score =  256 bits (653), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 256/486 (52%), Gaps = 6/486 (1%)

Query: 8   AILRNKFHSFTATFQLLRPYCSASTTVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGH 67
           A+ + +F++     +L+      S T ++  RN    I     P  SV  +L+  +  GH
Sbjct: 7   AVAKTRFNTTGVVSRLVSSLADGSDTSSVANRNSLKEILRKNGPRRSVTSLLQERIDSGH 66

Query: 68  AVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAE 127
           AV   EL+ I K L    R+  ALQ+ EWM ++        D A++L+LI +  GL+  E
Sbjct: 67  AVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGE 126

Query: 128 SYFQNLSDSDKTEKVHGA----LLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMS 182
            YF+ L  S  + +V  +    LL  YV    V ++ + M+K+  +GF V+P  +N +M 
Sbjct: 127 EYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMK 186

Query: 183 LYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIA 242
           LY  + Q+EKV  V++MMK + +  ++ SY + +N+    S +  +E + +++  +  + 
Sbjct: 187 LYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVE 246

Query: 243 VDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL 302
           V W +  T+AN Y+K+G  +KA + L+  E    + + + Y  +I+ YASLG K+ ++RL
Sbjct: 247 VGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRL 306

Query: 303 WKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSR 362
           W++ K  C +     YI +L  LVK GDLEEAE++  +WE     YD +V N+LL  Y R
Sbjct: 307 WEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVR 366

Query: 363 KGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWR 422
            G I KAE++   ++++G TP   +W I+  G V  ENMEKA     +   VL     WR
Sbjct: 367 NGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVF-VLMRRCHWR 425

Query: 423 PKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGVLES 482
           P  ++V +I  +      IEE   +V  L ++   +  +Y  L++++    R    + E 
Sbjct: 426 PSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEM 485

Query: 483 MKADNI 488
           MK D +
Sbjct: 486 MKLDKL 491


>AT1G02370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:474516-476383 FORWARD
           LENGTH=537
          Length = 537

 Score =  241 bits (616), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 255/474 (53%), Gaps = 4/474 (0%)

Query: 30  ASTTVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQ 89
           A+ TV   +R LY ++S L     +V   L  ++ EG  VR  +L R  KTLR  +R   
Sbjct: 62  AAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQH 121

Query: 90  ALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKT-EKVHGALLN 148
           A ++ +WM  + +      D A+ L+LIG+ +GLE+AE+YF NL  S K  +  +GAL+N
Sbjct: 122 AFEIFDWMEKRKMT-FSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMN 180

Query: 149 CYVMAGSVDKSLSQMQKMKDMGFVS-PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSP 207
           CY +    +K+ +  + M ++ FV+  L +NN+MS+Y R  Q EKVP ++  MK+ G+SP
Sbjct: 181 CYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISP 240

Query: 208 DIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIY 267
              +Y I + S G+ +DL+ +EK+++++  + +    W T+S +A  Y KAGL +KA   
Sbjct: 241 CGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSA 300

Query: 268 LKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVK 327
           LK  E+K    +  +++ ++S YA + K  ++ R+W+  K    +  N  Y+ ML  + K
Sbjct: 301 LKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSK 360

Query: 328 LGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNS 387
           LGDL+  +K+  +WE     YD ++ NI +  Y +  + E+AE +L   + K K P   +
Sbjct: 361 LGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKA 420

Query: 388 WSIIASGHVAKENMEKAFQCFKEALAVLAENKG-WRPKSDVVSSILSWVTDNRDIEEVED 446
             ++    +  +  + A +  + A++  AENK  W   S++VS         +D++  ED
Sbjct: 421 RQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAED 480

Query: 447 FVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEMEEILNS 500
           F   L     ++ +    LIK Y    +    + E +    IE+ EE++++L +
Sbjct: 481 FCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKT 534


>AT4G01990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:871268-872885 REVERSE
           LENGTH=502
          Length = 502

 Score =  235 bits (600), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 257/484 (53%), Gaps = 5/484 (1%)

Query: 18  TATFQLLRPYCSASTTVTINRRNLYSRISPLGDPSLSVVP-VLENWLQEGHAVRDQELQR 76
           TAT ++     ++  T     R++Y ++S LG      +   L  ++ EG  V+  +L R
Sbjct: 18  TATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIR 77

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS 136
             K LR  ++  +AL++ EWM  K +      D A++L LI + +GLE+AE+YF +L DS
Sbjct: 78  YAKDLRKFRQPQRALEIFEWMERKEI-AFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDS 136

Query: 137 DKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVS-PLHYNNIMSLYTRTEQHEKVPD 195
            K +  +G+LLNCY +     K+ +  + M D+  VS  L +NN+M++Y    Q EKVP 
Sbjct: 137 IKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPA 196

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           ++  MKE  ++P   +Y + + S G+  DL+ +EK+L++++ EG+    W T++ +A  Y
Sbjct: 197 LVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIY 256

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN 315
           +K GL  KA   LK  E+         Y+ +I+ Y  +    ++ R+W L K       N
Sbjct: 257 IKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNN 316

Query: 316 REYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
             Y+TML  L KL D++  +K+  +WE +  TYD ++ N+ +  Y ++ + E+AE +   
Sbjct: 317 SSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNG 376

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWV 435
            + K K     +  ++    +  +  + A + F+   AVL ++K W   S+++SS     
Sbjct: 377 AMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEA--AVLDQDKNWTWSSELISSFFLHF 434

Query: 436 TDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEME 495
            + +D++  E+F  +L K   ++ + Y  L+K Y+  G+    + + ++   I +DEE E
Sbjct: 435 EEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQE 494

Query: 496 EILN 499
            +L+
Sbjct: 495 CLLS 498


>AT2G20710.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8926535-8927722 FORWARD
           LENGTH=395
          Length = 395

 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 217/370 (58%), Gaps = 7/370 (1%)

Query: 97  MSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSV 156
           MS   +  I  GD A++L+LI +V GL  AE +F+ +    +   ++GALLNCY     +
Sbjct: 1   MSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVL 60

Query: 157 DKSLSQMQKMKDMGFVSP-LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRIC 215
            K+    Q+MK++GF+   L YN +++LY RT ++  V  +L  M+++ V PDIF+    
Sbjct: 61  HKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTR 120

Query: 216 LNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED-- 273
           L++Y   SD+E MEK L + E +  + +DW TY+  AN Y+KAGL +KAL  L+K E   
Sbjct: 121 LHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMV 180

Query: 274 KAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
            A KR   AY  ++S Y + GKK+++ RLW L K+      N  YI+++  L+K+ D+EE
Sbjct: 181 NAQKRKH-AYEVLMSFYGAAGKKEEVYRLWSLYKE-LDGFYNTGYISVISALLKMDDIEE 238

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
            EK++ +WE   + +D ++P++L+ GY +KG++EKAE ++  +V K +    ++W  +A 
Sbjct: 239 VEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLAL 298

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKK 453
           G+     MEKA + +K A+ V     GWRP   V+ S + ++   RD+E +   +  L +
Sbjct: 299 GYKMAGKMEKAVEKWKRAIEV--SKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSE 356

Query: 454 VMSMNRDMYL 463
              ++ D  L
Sbjct: 357 RGHISYDQLL 366


>AT1G28020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:9768395-9771157 REVERSE
           LENGTH=612
          Length = 612

 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 153/508 (30%), Positives = 263/508 (51%), Gaps = 38/508 (7%)

Query: 16  SFTATFQLL---RPYCSASTTVTINRRNLY------SRISPLGDPSLSVVPVLENWLQEG 66
           SF   +Q +   RPY +    +T++   L        RI+     +  ++PVLE W Q+G
Sbjct: 4   SFPFVYQNMLAKRPYGAYQNVITVSMSWLKIHGSCPHRITDALHRNAQIIPVLEQWRQQG 63

Query: 67  HAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESA 126
           + V    ++ I+K LR   +  QALQVSEWMS + +C ++P D A +L LI  V GLE A
Sbjct: 64  NQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEA 123

Query: 127 ESYFQNLSDSDKTEKVHGALLNCYVMAG-SVDKSLSQMQKMKDMG-FVSPLHYNNIMSLY 184
           E +F+++  + + + V+ +LLN Y  +  ++ K+ +  QKM+D+G  + P+ YN +MSLY
Sbjct: 124 EKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLY 183

Query: 185 TRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVD 244
           +  +  EKV ++L  MK++ V  D  +    L  Y A  D+  MEK L K E    I ++
Sbjct: 184 SALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLE 243

Query: 245 WMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRD-AVAYNHMISHYASLGKKKDMMRLW 303
           W T   +A  Y++A    KA+  L+  E    ++    AY+H++  Y   G +++++R+W
Sbjct: 244 WHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVW 303

Query: 304 KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRK 363
           KL K    ++ N  Y T++  L+K+ D+  AE++   WE     +D ++P +L  GY  +
Sbjct: 304 KLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDR 363

Query: 364 GLIEKAETMLRS------MVDKGKTPTPNSWSIIASGHVAK---ENMEKAFQCFKEALAV 414
           G+ EKAE ++ S       ++K  TP    W         K   +N+  + Q F +AL V
Sbjct: 364 GMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGDQMKPSDLKCLIKNLRDSKQ-FSKALQV 422

Query: 415 LAENKGWRPKSDVVSSILS------WVTDN-RDIEEVEDFVNSLKKVMSMNRDMYLSLIK 467
                 W  +  V +  L       ++T+N   +EE E +  ++ + M  +  +Y++L+ 
Sbjct: 423 ----SEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMK-DYSVYVALLS 477

Query: 468 LYVRC----GREVDGVLESMKADNIELD 491
            Y +     G  VD +L  M+ +N++ D
Sbjct: 478 SYAKSDKNLGNMVDEILREMEENNVDPD 505


>AT1G80270.3 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 |
           chr1:30181265-30183331 FORWARD LENGTH=596
          Length = 596

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 240/464 (51%), Gaps = 25/464 (5%)

Query: 33  TVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQ 92
           TV   +  L+  I  +  P LS+   L+ W++EG+ +   E+ + +  LR R+ + +ALQ
Sbjct: 124 TVEKKQSELFKTI--VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQ 181

Query: 93  VSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVM 152
           +SEW+ +     +   D A +L+L  ++RGLE  E+  Q +  S K E ++  LL   V 
Sbjct: 182 MSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVA 241

Query: 153 AGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
           AG+V KS     KMKD+GF +S    + ++ L+ R ++ +K+ DVL +M+++ + P + +
Sbjct: 242 AGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLT 300

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y+I ++  GA +D+  ME++LE ++ EG + +D+ T +  A  Y  AGLKDKA   LK+ 
Sbjct: 301 YKILIDVKGATNDISGMEQILETMKDEG-VELDFQTQALTARHYSGAGLKDKAEKVLKEM 359

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCK-KQLNREYITMLGCLVKLGD 330
           E ++ + +  A+  ++S YASLG++ ++ R+WK+    C+ K    E +  +    KL  
Sbjct: 360 EGESLEANRRAFKDLLSIYASLGREDEVKRIWKI----CESKPYFEESLAAIQAFGKLNK 415

Query: 331 LEEAEKLLGQW-----ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTP 385
           ++EAE +  +        S +TY     ++LL  Y    ++ K + +++ M + G     
Sbjct: 416 VQEAEAIFEKIVKMDRRASSSTY-----SVLLRVYVDHKMLSKGKDLVKRMAESGCRIEA 470

Query: 386 NSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVE 445
            +W  +   +V    +EKA     +A    ++    +   +    I+   +   D+   E
Sbjct: 471 TTWDALIKLYVEAGEVEKADSLLDKA----SKQSHTKLMMNSFMYIMDEYSKRGDVHNTE 526

Query: 446 DFVNSLKKVMSMNR-DMYLSLIKLYVRCGREVDGVLESMKADNI 488
                +++    +R   + +L++ Y+       G+ + +KADNI
Sbjct: 527 KIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNI 570


>AT1G80270.2 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 |
           chr1:30181265-30183331 FORWARD LENGTH=596
          Length = 596

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 240/464 (51%), Gaps = 25/464 (5%)

Query: 33  TVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQ 92
           TV   +  L+  I  +  P LS+   L+ W++EG+ +   E+ + +  LR R+ + +ALQ
Sbjct: 124 TVEKKQSELFKTI--VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQ 181

Query: 93  VSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVM 152
           +SEW+ +     +   D A +L+L  ++RGLE  E+  Q +  S K E ++  LL   V 
Sbjct: 182 MSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVA 241

Query: 153 AGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
           AG+V KS     KMKD+GF +S    + ++ L+ R ++ +K+ DVL +M+++ + P + +
Sbjct: 242 AGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLT 300

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y+I ++  GA +D+  ME++LE ++ EG + +D+ T +  A  Y  AGLKDKA   LK+ 
Sbjct: 301 YKILIDVKGATNDISGMEQILETMKDEG-VELDFQTQALTARHYSGAGLKDKAEKVLKEM 359

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCK-KQLNREYITMLGCLVKLGD 330
           E ++ + +  A+  ++S YASLG++ ++ R+WK+    C+ K    E +  +    KL  
Sbjct: 360 EGESLEANRRAFKDLLSIYASLGREDEVKRIWKI----CESKPYFEESLAAIQAFGKLNK 415

Query: 331 LEEAEKLLGQW-----ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTP 385
           ++EAE +  +        S +TY     ++LL  Y    ++ K + +++ M + G     
Sbjct: 416 VQEAEAIFEKIVKMDRRASSSTY-----SVLLRVYVDHKMLSKGKDLVKRMAESGCRIEA 470

Query: 386 NSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVE 445
            +W  +   +V    +EKA     +A    ++    +   +    I+   +   D+   E
Sbjct: 471 TTWDALIKLYVEAGEVEKADSLLDKA----SKQSHTKLMMNSFMYIMDEYSKRGDVHNTE 526

Query: 446 DFVNSLKKVMSMNR-DMYLSLIKLYVRCGREVDGVLESMKADNI 488
                +++    +R   + +L++ Y+       G+ + +KADNI
Sbjct: 527 KIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNI 570


>AT1G80270.1 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 |
           chr1:30181265-30183331 FORWARD LENGTH=596
          Length = 596

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 240/464 (51%), Gaps = 25/464 (5%)

Query: 33  TVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQ 92
           TV   +  L+  I  +  P LS+   L+ W++EG+ +   E+ + +  LR R+ + +ALQ
Sbjct: 124 TVEKKQSELFKTI--VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQ 181

Query: 93  VSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVM 152
           +SEW+ +     +   D A +L+L  ++RGLE  E+  Q +  S K E ++  LL   V 
Sbjct: 182 MSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVA 241

Query: 153 AGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
           AG+V KS     KMKD+GF +S    + ++ L+ R ++ +K+ DVL +M+++ + P + +
Sbjct: 242 AGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLT 300

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y+I ++  GA +D+  ME++LE ++ EG + +D+ T +  A  Y  AGLKDKA   LK+ 
Sbjct: 301 YKILIDVKGATNDISGMEQILETMKDEG-VELDFQTQALTARHYSGAGLKDKAEKVLKEM 359

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCK-KQLNREYITMLGCLVKLGD 330
           E ++ + +  A+  ++S YASLG++ ++ R+WK+    C+ K    E +  +    KL  
Sbjct: 360 EGESLEANRRAFKDLLSIYASLGREDEVKRIWKI----CESKPYFEESLAAIQAFGKLNK 415

Query: 331 LEEAEKLLGQW-----ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTP 385
           ++EAE +  +        S +TY     ++LL  Y    ++ K + +++ M + G     
Sbjct: 416 VQEAEAIFEKIVKMDRRASSSTY-----SVLLRVYVDHKMLSKGKDLVKRMAESGCRIEA 470

Query: 386 NSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVE 445
            +W  +   +V    +EKA     +A    ++    +   +    I+   +   D+   E
Sbjct: 471 TTWDALIKLYVEAGEVEKADSLLDKA----SKQSHTKLMMNSFMYIMDEYSKRGDVHNTE 526

Query: 446 DFVNSLKKVMSMNR-DMYLSLIKLYVRCGREVDGVLESMKADNI 488
                +++    +R   + +L++ Y+       G+ + +KADNI
Sbjct: 527 KIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNI 570


>AT5G09450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2941864-2943324 FORWARD
           LENGTH=409
          Length = 409

 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 170/311 (54%), Gaps = 3/311 (0%)

Query: 40  NLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSS 99
           +L SRI  L  P  S   VLE W+ EG+ +   EL+ I K LR  +R+  AL+V+EWM  
Sbjct: 56  DLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQ 115

Query: 100 KGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKS 159
                I   D A +++LI +V G+++AE YF+ L    KT + + +LL+ Y  +   +++
Sbjct: 116 HEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERA 175

Query: 160 LSQMQKM--KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLN 217
            +  +++   D      + YN +M+LY    Q EKVP+V+ ++K+  VSPDIF+Y + L+
Sbjct: 176 EALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLS 235

Query: 218 SYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLK-KCEDKAY 276
           S  A  +++ + K+LE++  +      W+ Y  + + Y+ +     A   L  + E    
Sbjct: 236 SCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSIS 295

Query: 277 KRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEK 336
           +R+ + Y+ ++  +  LG K  + ++WK  ++  +   +R YI +L   + LG L EAE+
Sbjct: 296 QREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEE 355

Query: 337 LLGQWELSGNT 347
           ++ QW+ S  T
Sbjct: 356 IIHQWKESKTT 366


>AT1G15480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:5318307-5320422 FORWARD
           LENGTH=594
          Length = 594

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 227/440 (51%), Gaps = 15/440 (3%)

Query: 53  LSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAV 112
           LSV   L+ W+++G     +E +  +  LR R+ F +ALQ++EW+       +   D A 
Sbjct: 140 LSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYAC 199

Query: 113 QLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF- 171
           +L+LI +VRG    E+Y + + +S + E V+  LL  +V   +V  + +   KMKD+GF 
Sbjct: 200 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 259

Query: 172 VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKL 231
           +S    N ++ LY R ++ +K+ DVL +++++ + P++ +Y+I +++ G+ +D+  ME++
Sbjct: 260 LSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQI 318

Query: 232 LEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYA 291
           +E +++EG + +D    + +A  Y  AGLK+KA   LK+ E ++ + +      ++S Y 
Sbjct: 319 VETMKSEG-VELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 377

Query: 292 SLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEA-EKLLG-QWELSGNTYD 349
            L ++ ++ R+WK+ ++N +       I   G + K+ D E   EK+L     +S N Y 
Sbjct: 378 YLQREDEVRRVWKICEENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVY- 436

Query: 350 FKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
               ++LL  Y    ++ + + +++ M D G      +W  +   +V    +EKA     
Sbjct: 437 ----SVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLS 492

Query: 410 EALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRD-MYLSLIKL 468
           +A+    ++K  +P       ++       D+   E     +K+    +R   Y +LI+ 
Sbjct: 493 KAI----QSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQA 548

Query: 469 YVRCGREVDGVLESMKADNI 488
           YV       G+ E MKADNI
Sbjct: 549 YVNAKAPAYGMKERMKADNI 568


>AT3G15590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5275568-5277658 REVERSE
           LENGTH=610
          Length = 610

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 205/443 (46%), Gaps = 23/443 (5%)

Query: 54  SVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQ 113
           SV  VLE W++EG  +   E+   +  LR RK +   LQ+ EW+ +         + A Q
Sbjct: 156 SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQ 215

Query: 114 LELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVS 173
           L+L+ +V  L+ AE + +++ +S + E V+  LL   V+   V+K+     KMK++ F +
Sbjct: 216 LDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPT 275

Query: 174 PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
            +   N + L       +K+ DVL +M+ + + P   +Y   +NS G   D+  MEK++E
Sbjct: 276 SVFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
            I+ EG I +D    S +A +Y++AGLK++A   +K+ E K  ++       ++  YA +
Sbjct: 336 TIKEEG-IELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADI 394

Query: 294 GKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLE-------EAEKLLGQWELSGN 346
           G   ++ RL +    N +      Y   +  +   G L+         E+L+ ++++   
Sbjct: 395 GDSDNVRRLSRFVDQNPR------YDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPM 448

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
              F +  I    Y+   ++ K   +++ M + G    P++W  +   ++    + KA  
Sbjct: 449 MPYFALMEI----YTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAEL 504

Query: 407 CFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDM-YLSL 465
               A     ++   RP      +IL       D+   E     +K+     + M Y ++
Sbjct: 505 ILNRA----TKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETV 560

Query: 466 IKLYVRCGREVDGVLESMKADNI 488
           +  Y+       G++E MKADN+
Sbjct: 561 LLAYINAKTPAYGMIERMKADNV 583


>AT3G11380.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:3564079-3565779 FORWARD
           LENGTH=541
          Length = 541

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 199/442 (45%), Gaps = 74/442 (16%)

Query: 74  LQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNL 133
           L+ IV+ LR+  R  QAL+VS+WM  + +   LP D + +  L  +V  LE AE +F+++
Sbjct: 78  LRGIVEKLRSSNRPRQALEVSDWMVEQKMYN-LPEDFSARFHLTEKVLNLEEAEKFFESI 136

Query: 134 SDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKM-----KDMGFVSPLHYNNIMSLYTRTE 188
            ++ + E ++ +LL  Y    S +K+L + + +     K    + P  YN++ SLY+   
Sbjct: 137 PENMRFESMYNSLLRSYARQ-SGEKALKKAESVFKKMKKLGLLLRPSPYNSMTSLYSSLG 195

Query: 189 QHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTY 248
             +KV ++L  MKE+ V  D  +    L  Y A SD+  M+K L   + +    +D +T 
Sbjct: 196 NRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVATMDKFL--ADRKEITRLDGLTM 253

Query: 249 STVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKD 308
             +A                     KAY+        ++S Y   G+ +D+ R+W   K 
Sbjct: 254 LAMA---------------------KAYE--------LMSLYGEAGEIEDVHRVWDKYKA 284

Query: 309 NCKKQLNREYITMLGCLVKLGDLEEAEKL-LGQWELSGNTYDFKVPNILLIGYSRKGLIE 367
             +K  N E+ T++G L+KLGD + AEK+   +WE SG  +D ++P++L+ GY  KG++ 
Sbjct: 285 TRQKD-NEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKGMVM 343

Query: 368 KAET-----------------MLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ---- 406
           KA+                  +L  M  KG   +P     +         + KA +    
Sbjct: 344 KADKLVNKTLWIRGLATPITLLLEEMDKKGNKVSPPGLRDLIKNLRDSNQLSKALEASTW 403

Query: 407 -CFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSL 465
            C K+   + +E+   R         L        +EE E+F  S       +  +Y +L
Sbjct: 404 MCQKKVFNLFSEDYATR---------LHLTEKVLGLEEAENFFESSIPENMKDYSVYDTL 454

Query: 466 IKLYVRCGR---EVDGVLESMK 484
           +  Y R      + + V E M+
Sbjct: 455 LSCYARSSNTQSKAEAVFEKMR 476



 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 6/190 (3%)

Query: 45  ISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCP 104
           I  L  P   +  +LE   ++G+ V    L+ ++K LR   + ++AL+ S WM  K +  
Sbjct: 355 IRGLATP---ITLLLEEMDKKGNKVSPPGLRDLIKNLRDSNQLSKALEASTWMCQKKVFN 411

Query: 105 ILPGDRAVQLELIGRVRGLESAESYFQ-NLSDSDKTEKVHGALLNCYVMAGSV-DKSLSQ 162
           +   D A +L L  +V GLE AE++F+ ++ ++ K   V+  LL+CY  + +   K+ + 
Sbjct: 412 LFSEDYATRLHLTEKVLGLEEAENFFESSIPENMKDYSVYDTLLSCYARSSNTQSKAEAV 471

Query: 163 MQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGA 221
            +KM+++G  S L  +N+++SLY+   +   V  +L  MK   + PDI +    L +   
Sbjct: 472 FEKMRELGLQSKLSPFNSLISLYSGQGKLSVVNILLCDMKHKNIEPDIVTRNNVLRANAY 531

Query: 222 RSDLENMEKL 231
              +++MEK+
Sbjct: 532 ILAIDSMEKV 541


>AT1G28000.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:9756674-9757947 REVERSE
           LENGTH=388
          Length = 388

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 141/277 (50%), Gaps = 7/277 (2%)

Query: 42  YSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKG 101
           +SRI  LG     V P L+ WL+ G  +    L+ ++ +L   +RF  ALQVSEW++ +G
Sbjct: 36  HSRIMALGREQKKVTPPLDEWLKRGKDLNPAVLRGLINSLCESQRFNHALQVSEWITKRG 95

Query: 102 LCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSV---DK 158
           +  +   D A +L L+    GL+ AE +F+++ ++ + + VH  LL+ Y ++       +
Sbjct: 96  IFDLSTEDFASRLCLVEISTGLKEAEKFFKSIPENMRDDSVHTTLLSLYTISKKTRHEAE 155

Query: 159 SLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDI-FSYRICLN 217
           +  Q  ++++M  + P  Y +++ LY    +   + ++L  MKE+GV  D   +    L 
Sbjct: 156 ATYQTMRVQNM-LLKPYPYYSMIYLYALLGEKNMIDEILRQMKENGVEHDKNLTANNVLK 214

Query: 218 SYGARSDLENMEKLLEKIET-EGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAY 276
           +Y +  D+E ME  L  +E  E   ++ W T  ++A  Y+K G   KA+  L++ E    
Sbjct: 215 AYASLPDVEAMEMFLMGLEVEEPRFSLAWQTGISIAKAYLKGGSSRKAVEMLRRTELVVD 274

Query: 277 KRDAVAYNH-MISHYASLGKKKDMMRLWKLQKDNCKK 312
            +   + N  ++  Y   G K+D  RL +L     KK
Sbjct: 275 TKSKDSANKVLMMMYWDAGAKQDASRLSRLIYPKSKK 311


>AT1G07590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2336649-2338481 REVERSE
           LENGTH=534
          Length = 534

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 192/426 (45%), Gaps = 8/426 (1%)

Query: 52  SLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRA 111
            ++V   L++W+ +G  V   ++   +  LR   R  +AL++ EW+  +    +   + +
Sbjct: 78  GVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYS 137

Query: 112 VQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF 171
             LE   ++ G+   E  F  +    + E ++  L+   +  G +  +L  M+KM+++G+
Sbjct: 138 YLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGY 197

Query: 172 -VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
             S L YN ++   +   + + +   LA+MK D  +P + +Y I +       +++ + K
Sbjct: 198 RTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLK 257

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
             + ++  G +  + ++Y  +A  +  A L   A  Y ++ E      +    + ++  Y
Sbjct: 258 AFDGMKKAG-VEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDILMILY 316

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDF 350
             LGK+K++ R W + +     + ++ Y+       ++G+L+ AE+L  + +      + 
Sbjct: 317 GRLGKEKELARTWNVIRGFHHVR-SKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKET 375

Query: 351 KVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           +  N LL  Y + GLIEKA  + R M   G  P   ++  +A G    + M++A +  + 
Sbjct: 376 EQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNIEM 435

Query: 411 ALAVLAENK--GWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRD--MYLSLI 466
            L +          P  +   SI+    +  D+E  E     +K     NR   +Y +L 
Sbjct: 436 GLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNA-KYNRYAFVYNALF 494

Query: 467 KLYVRC 472
           K YV+ 
Sbjct: 495 KAYVKA 500


>AT1G43010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:16153609-16154468 FORWARD
           LENGTH=257
          Length = 257

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 125/234 (53%), Gaps = 9/234 (3%)

Query: 33  TVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQ 92
           T+    + L SRI    +   S++P+LE W ++G+ V    L+ ++K L   K FT AL+
Sbjct: 30  TLPAANQTLPSRIKTDINQKASIIPLLEQWRKQGYEVNPSHLRGLIKNLSDCKNFTTALE 89

Query: 93  VSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVM 152
            S+WM    +    P D A QL L+  V GLE AE  F+N+ +  +    +  LL+ Y  
Sbjct: 90  ASKWMFKHSVFDNFPEDCAAQLHLVNTVLGLEEAEKMFKNIPEKMRD---YSVLLSSYTK 146

Query: 153 -AGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIF 210
              +VDK+ +  +KM+++GF + P  +N+++ LY + ++ + V  +L  +K++ +  ++ 
Sbjct: 147 PVRTVDKAEATFKKMRELGFLLKPYLFNSMICLYGQLQRLDMVEKLLYKLKKNNM--EVG 204

Query: 211 SYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           S ++  N     +++  MEK    +  EG I ++  T   +A  Y +AG  +KA
Sbjct: 205 SLKVN-NVSRVYANINAMEKFKTWVSKEG-IELERDTIVAMAKAYHRAGSIEKA 256


>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 177/403 (43%), Gaps = 22/403 (5%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS 136
           +VK+        +AL +     + G  P +    AV    I   R +  AE+ F+ + +S
Sbjct: 140 VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199

Query: 137 DKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKV 193
             +  V  +  L+  +  AG++D +L+   KM+  G + + + YN ++  Y +  + +  
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 194 PDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVAN 253
             +L  M   G+ P++ SY + +N       ++ +  +L ++   G  ++D +TY+T+  
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG-YSLDEVTYNTLIK 318

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK------DMMRLWKLQK 307
            Y K G   +AL+   +          + Y  +I      G         D MR+  L  
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL-- 376

Query: 308 DNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIE 367
             C  +  R Y T++    + G + EA ++L +   +G +      N L+ G+   G +E
Sbjct: 377 --CPNE--RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 368 KAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDV 427
            A  +L  M +KG +P   S+S + SG     ++++A +  +E +      KG +P +  
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV-----EKGIKPDTIT 487

Query: 428 VSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLIKLY 469
            SS++    + R  +E  D    + +V +  +   Y +LI  Y
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 166/386 (43%), Gaps = 50/386 (12%)

Query: 58  VLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPIL----------- 106
           VL    + G+++ +     ++K       F QAL +   M   GL P +           
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356

Query: 107 -PGDRAVQLELIG--RVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQM 163
             G+    +E +   RVRGL   E  +  L D              +   G ++++   +
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG-------------FSQKGYMNEAYRVL 403

Query: 164 QKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGAR 222
           ++M D GF  S + YN +++ +  T + E    VL  MKE G+SPD+ SY   L+ +   
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 223 SDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVA 282
            D++   ++  ++  +G I  D +TYS++   + +     +A    ++        D   
Sbjct: 464 YDVDEALRVKREMVEKG-IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 522

Query: 283 YNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT---MLGCLVKLGDLEEAEKLLG 339
           Y  +I+ Y   G   D+ +  +L  +  +K +  + +T   ++  L K     EA++LL 
Sbjct: 523 YTALINAYCMEG---DLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 340 QWEL-----SGNTY----------DFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPT 384
           +        S  TY          +FK    L+ G+  KG++ +A+ +  SM+ K   P 
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639

Query: 385 PNSWSIIASGHVAKENMEKAFQCFKE 410
             +++I+  GH    ++ KA+  +KE
Sbjct: 640 GTAYNIMIHGHCRAGDIRKAYTLYKE 665



 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 140/313 (44%), Gaps = 26/313 (8%)

Query: 89  QALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESY--FQNLSDSDKTEKV--HG 144
           +A++  + M  +GLCP    +R     + G  +     E+Y   + ++D+  +  V  + 
Sbjct: 363 RAMEFLDQMRVRGLCP---NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           AL+N + + G ++ +++ ++ MK+ G +SP  + Y+ ++S + R+   ++   V   M E
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKG-LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE 478

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G+ PD  +Y   +  +  +   +    L E++   G +  D  TY+ + N Y   G  +
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG-LPPDEFTYTALINAYCMEGDLE 537

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL---------------WKLQK 307
           KAL    +  +K    D V Y+ +I+      + ++  RL               +    
Sbjct: 538 KALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLI 597

Query: 308 DNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIE 367
           +NC     +  ++++      G + EA+++        +  D    NI++ G+ R G I 
Sbjct: 598 ENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIR 657

Query: 368 KAETMLRSMVDKG 380
           KA T+ + MV  G
Sbjct: 658 KAYTLYKEMVKSG 670



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 112/248 (45%), Gaps = 8/248 (3%)

Query: 163 MQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLN-SYGA 221
           +Q+  D+ + +   ++ ++  Y+R    +K   ++ + +  G  P + SY   L+ +  +
Sbjct: 123 LQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRS 182

Query: 222 RSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAV 281
           + ++   E + +++  E  ++ +  TY+ +   +  AG  D AL    K E K    + V
Sbjct: 183 KRNISFAENVFKEM-LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241

Query: 282 AYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT---MLGCLVKLGDLEEAEKLL 338
            YN +I  Y  L K  D    +KL +    K L    I+   ++  L + G ++E   +L
Sbjct: 242 TYNTLIDGYCKLRKIDDG---FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL 298

Query: 339 GQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAK 398
            +    G + D    N L+ GY ++G   +A  M   M+  G TP+  +++ +       
Sbjct: 299 TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358

Query: 399 ENMEKAFQ 406
            NM +A +
Sbjct: 359 GNMNRAME 366


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 172/399 (43%), Gaps = 25/399 (6%)

Query: 27  YCSASTTVTINRRNLYSR----ISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLR 82
           +C      T + RNL  R       +G  +   V +  + +Q        +  R+   + 
Sbjct: 40  FCCERGFSTFSDRNLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIA 99

Query: 83  TRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLS--DSDKTE 140
             K++   L + + M SKG+   +    ++ +    R R L  A S    +     +   
Sbjct: 100 KTKQYELVLALCKQMESKGIAHSIY-TLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDT 158

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQ---HEKVPDVL 197
            +   LLN   +   V ++L  + +M +MG     H   +++L T       + KV D +
Sbjct: 159 VIFNTLLNGLCLECRVSEALELVDRMVEMG-----HKPTLITLNTLVNGLCLNGKVSDAV 213

Query: 198 AM---MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANF 254
            +   M E G  P+  +Y   LN            +LL K+E E +I +D + YS + + 
Sbjct: 214 VLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKYSIIIDG 272

Query: 255 YVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQL 314
             K G  D A     + E K +K D + YN +I  + + G+  D     KL +D  K+++
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDG---AKLLRDMIKRKI 329

Query: 315 NREYIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAET 371
           +   +T   ++   VK G L EA++LL +    G   +    N L+ G+ ++  +E+A  
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQ 389

Query: 372 MLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           M+  M+ KG  P   +++I+ +G+     ++   + F+E
Sbjct: 390 MVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE 428



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/269 (19%), Positives = 132/269 (49%), Gaps = 6/269 (2%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
            L++ +V  G + ++   +++M   G ++P  + YN+++  + +  + E+   ++ +M  
Sbjct: 338 VLIDSFVKEGKLREADQLLKEMMQRG-IAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G  PDI ++ I +N Y   + +++  +L  ++   G IA + +TY+T+   + ++G  +
Sbjct: 397 KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIA-NTVTYNTLVQGFCQSGKLE 455

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITM 321
            A    ++   +  + D V+Y  ++      G+ +  + ++ K++K   +  +   Y+ +
Sbjct: 456 VAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI-YMII 514

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +  +     +++A  L     L G   D +  NI++    RK  + KA+ + R M ++G 
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGH 574

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            P   +++I+   H+  ++   A +  +E
Sbjct: 575 APDELTYNILIRAHLGDDDATTAAELIEE 603


>AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:654102-656561 FORWARD
           LENGTH=819
          Length = 819

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 140/323 (43%), Gaps = 9/323 (2%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           G V  + +    +++ GF   ++ Y +++S +  + ++ +  +V   M+EDG  P + +Y
Sbjct: 187 GRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITY 246

Query: 213 RICLNSYGARSDLEN-MEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
            + LN +G      N +  L+EK++++G IA D  TY+T+     +  L  +A    ++ 
Sbjct: 247 NVILNVFGKMGTPWNKITSLVEKMKSDG-IAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDL 331
           +   +  D V YN ++  Y    + K+ M++      N        Y +++    + G L
Sbjct: 306 KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGML 365

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           +EA +L  Q    G   D      LL G+ R G +E A ++   M + G  P   +++  
Sbjct: 366 DEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAF 425

Query: 392 ASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
              +  +    +  + F E         G  P     +++L+    N    EV      +
Sbjct: 426 IKMYGNRGKFTEMMKIFDEINVC-----GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480

Query: 452 KKV-MSMNRDMYLSLIKLYVRCG 473
           K+      R+ + +LI  Y RCG
Sbjct: 481 KRAGFVPERETFNTLISAYSRCG 503



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 136/310 (43%), Gaps = 12/310 (3%)

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
           I+S+  +  +     ++   ++EDG S D++SY   ++++           + +K+E +G
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238

Query: 240 DIAVDWMTYSTVANFYVKAGLK-DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKD 298
                 +TY+ + N + K G   +K    ++K +      DA  YN +I+        ++
Sbjct: 239 -CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 299 MMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLI 358
             ++++  K          Y  +L    K    +EA K+L +  L+G +      N L+ 
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357

Query: 359 GYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAEN 418
            Y+R G++++A  +   M +KG  P   +++ + SG      +E A   F+E       N
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE-----MRN 412

Query: 419 KGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDM--YLSLIKLYVRCG--R 474
            G +P     ++ +    +     E+    + +  V  ++ D+  + +L+ ++ + G   
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI-NVCGLSPDIVTWNTLLAVFGQNGMDS 471

Query: 475 EVDGVLESMK 484
           EV GV + MK
Sbjct: 472 EVSGVFKEMK 481



 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 159/350 (45%), Gaps = 24/350 (6%)

Query: 89  QALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLN 148
           +A+++   M+ KG  P +       L    R   +ESA S F+ + ++     +     N
Sbjct: 367 EAMELKNQMAEKGTKPDV-FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNI--CTFN 423

Query: 149 CYV-MAGSVDKSLSQMQKMKD---MGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
            ++ M G+  K  ++M K+ D   +  +SP  + +N +++++ +     +V  V   MK 
Sbjct: 424 AFIKMYGNRGK-FTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G  P+  ++   +++Y      E    +  ++   G +  D  TY+TV     + G+ +
Sbjct: 483 AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG-VTPDLSTYNTVLAALARGGMWE 541

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI--- 319
           ++   L + ED   K + + Y  ++  YA+ GK+  +M    L ++     +    +   
Sbjct: 542 QSEKVLAEMEDGRCKPNELTYCSLLHAYAN-GKEIGLMH--SLAEEVYSGVIEPRAVLLK 598

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           T++    K   L EAE+   + +  G + D    N ++  Y R+ ++ KA  +L  M ++
Sbjct: 599 TLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKER 658

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVS 429
           G TP+  +++ +   H    +  K+ +  +E LA     KG +P  D++S
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILA-----KGIKP--DIIS 701



 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/429 (20%), Positives = 170/429 (39%), Gaps = 52/429 (12%)

Query: 54  SVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQ 113
           S + + E     G           +K    R +FT+ +++ + ++  GL P +     + 
Sbjct: 402 SAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTL- 460

Query: 114 LELIGRVRGLESAES-YFQNLSDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMG 170
           L + G+  G++S  S  F+ +  +      +    L++ Y   GS +++++  ++M D G
Sbjct: 461 LAVFGQ-NGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519

Query: 171 FVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENME 229
               L  YN +++   R    E+   VLA M++    P+  +Y   L++Y    ++  M 
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMH 579

Query: 230 KLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISH 289
            L E++ + G I    +   T+     K  L  +A     + +++ +  D    N M+S 
Sbjct: 580 SLAEEVYS-GVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI 638

Query: 290 YASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYD 349
           Y                    ++Q+                + +A  +L   +  G T  
Sbjct: 639 YG-------------------RRQM----------------VAKANGVLDYMKERGFTPS 663

Query: 350 FKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
               N L+  +SR     K+E +LR ++ KG  P   S++ +   +     M  A + F 
Sbjct: 664 MATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723

Query: 410 EALAVLAENKGWRPKSDVVSS---ILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLI 466
           E       N G  P  DV++    I S+  D+   E +      +K     N++ Y S++
Sbjct: 724 E-----MRNSGIVP--DVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776

Query: 467 KLYVRCGRE 475
             Y +  R+
Sbjct: 777 DGYCKLNRK 785



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 87/177 (49%), Gaps = 8/177 (4%)

Query: 163 MQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYG 220
             ++K+ GF SP     N+++S+Y R +   K   VL  MKE G +P + +Y   +  + 
Sbjct: 617 FSELKERGF-SPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHS 675

Query: 221 ARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK-AGLKDKALIYLKKCEDKAYKRD 279
             +D    E++L +I  +G I  D ++Y+TV   Y +   ++D + I+  +  +     D
Sbjct: 676 RSADFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDASRIF-SEMRNSGIVPD 733

Query: 280 AVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNREYITMLGCLVKLGDLEEAE 335
            + YN  I  YA+    ++ + + + + K  C+   N  Y +++    KL   +EA+
Sbjct: 734 VITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQN-TYNSIVDGYCKLNRKDEAK 789


>AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23385324-23387167 REVERSE LENGTH=590
          Length = 590

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 151/342 (44%), Gaps = 19/342 (5%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAM---MK 201
           +LLN +     + ++++ + +M +MG+  P       +L     QH K  + +A+   M 
Sbjct: 150 SLLNGFCHGNRISEAVALVDQMVEMGY-QP-DTVTFTTLVHGLFQHNKASEAVALVERMV 207

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G  PD+ +Y   +N    R + +    LL K+E +G I  D + Y+T+ +   K    
Sbjct: 208 VKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME-KGKIEADVVIYNTIIDGLCKYKHM 266

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI-- 319
           D A     K E K  K D   YN +IS   + G+  D  RL     D  +K +N + +  
Sbjct: 267 DDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL---SDMLEKNINPDLVFF 323

Query: 320 -TMLGCLVKLGDLEEAEKLLGQWELSGNTY-DFKVPNILLIGYSRKGLIEKAETMLRSMV 377
             ++   VK G L EAEKL  +   S + + D    N L+ G+ +   +E+   + R M 
Sbjct: 324 NALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMS 383

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTD 437
            +G      +++ +  G     + + A   FK+ ++      G  P     + +L  + +
Sbjct: 384 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS-----DGVHPDIMTYNILLDGLCN 438

Query: 438 NRDIE-EVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDG 478
           N ++E  +  F    K+ M ++   Y ++I+   + G+  DG
Sbjct: 439 NGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDG 480



 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 5/192 (2%)

Query: 199 MMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKA 258
           M+K     PD+ +Y   +  +     +E   ++  ++   G +  + +TY+T+ + + +A
Sbjct: 346 MVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG-NTVTYTTLIHGFFQA 404

Query: 259 GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNRE 317
              D A +  K+        D + YN ++    + G  +  + +++ +QK + K  +   
Sbjct: 405 RDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDI-VT 463

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y TM+  L K G +E+   L     L G   +      ++ G+ RKGL E+A+ +   M 
Sbjct: 464 YTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMK 523

Query: 378 DKGKTPTPNSWS 389
           + G  P PNS +
Sbjct: 524 EDG--PLPNSGT 533


>AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:890428-892410 REVERSE
           LENGTH=660
          Length = 660

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/440 (22%), Positives = 187/440 (42%), Gaps = 63/440 (14%)

Query: 5   PFSAILRNKFHSFTATFQLLRPYCSASTTVTINRRNLYS---RISPLGDPSLSVVPVLEN 61
           PFS  L N            RP+CS+ +       +  S   + SPL     SV  V  +
Sbjct: 8   PFSVPLLN------------RPHCSSQSHCLYKNGDFLSDDSKCSPLSSSRTSVRWVFNS 55

Query: 62  -------WLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQL 114
                  W++  + V D     +VK+ R        L  S W+S   +  +L G  +++ 
Sbjct: 56  SSLPPPEWIEPFNDVSD-----LVKSNRN-------LLPSPWVSQ--ILNLLDGSASMES 101

Query: 115 ELIGRVRG--LESAESYFQNLSDSD----------------KTEKVHGALLNCYV----- 151
            L G  R   ++ + ++   +  SD                + +K +   L CYV     
Sbjct: 102 NLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDV 161

Query: 152 --MAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPD 208
             +A  VD+      ++K   F ++    N ++  + +    E++  V   MKE+G+ P 
Sbjct: 162 LALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPT 221

Query: 209 IFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYL 268
           +++Y   +N   +   +++ E++ E +E+ G I  D +TY+T+   Y KAG   KA+  L
Sbjct: 222 LYTYNFLMNGLVSAMFVDSAERVFEVMES-GRIKPDIVTYNTMIKGYCKAGQTQKAMEKL 280

Query: 269 KKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKL 328
           +  E + ++ D + Y  MI    +       + L++   +   +     +  ++G L K 
Sbjct: 281 RDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKE 340

Query: 329 GDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSW 388
           G L E   +       G+  +  +  +L+ GY++ G +E A  +L  M+D+G  P   ++
Sbjct: 341 GKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 400

Query: 389 SIIASGHVAKENMEKAFQCF 408
           S++ +G      +E+A   F
Sbjct: 401 SVVVNGLCKNGRVEEALDYF 420



 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 5/250 (2%)

Query: 164 QKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGAR 222
           Q+M + G   P H ++ ++    +  +  +   V   M   G  P++  Y + ++ Y   
Sbjct: 316 QEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKS 375

Query: 223 SDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVA 282
             +E+  +LL ++  EG    D +TYS V N   K G  ++AL Y   C       +++ 
Sbjct: 376 GSVEDAIRLLHRMIDEG-FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMF 434

Query: 283 YNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQW 341
           Y+ +I      G+  +  RL++ + +  C +  +  Y  ++    K   ++EA  L  + 
Sbjct: 435 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRD-SYCYNALIDAFTKHRKVDEAIALFKRM 493

Query: 342 ELS-GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKEN 400
           E   G         ILL G  ++   E+A  +   M+DKG TPT   +  +++G      
Sbjct: 494 EEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGK 553

Query: 401 MEKAFQCFKE 410
           + +A +   E
Sbjct: 554 VARACKILDE 563



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 4/275 (1%)

Query: 137 DKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVP 194
           + T   +  L+N  V A  VD S  ++ ++ + G + P  + YN ++  Y +  Q +K  
Sbjct: 219 EPTLYTYNFLMNGLVSAMFVD-SAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277

Query: 195 DVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANF 254
           + L  M+  G   D  +Y   + +  A SD  +   L ++++ +G I V    +S V   
Sbjct: 278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKG-IQVPPHAFSLVIGG 336

Query: 255 YVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQL 314
             K G  ++     +    K  K +   Y  +I  YA  G  +D +RL     D   K  
Sbjct: 337 LCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPD 396

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
              Y  ++  L K G +EEA          G   +    + L+ G  + G +++AE +  
Sbjct: 397 VVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 456

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
            M +KG T     ++ +         +++A   FK
Sbjct: 457 EMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 491


>AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22598038-22601688 FORWARD
           LENGTH=1136
          Length = 1136

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 173/403 (42%), Gaps = 29/403 (7%)

Query: 84  RKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRV-RGLESAESYFQNLSDSDK---- 138
           + RF  A+++ + M SKG+      D      LI  + R    A+ Y   L D  K    
Sbjct: 281 KGRFKAAIELLDHMKSKGV----DADVCTYNMLIHDLCRSNRIAKGYLL-LRDMRKRMIH 335

Query: 139 -TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH--YNNIMSLYTRTEQHEKVPD 195
             E  +  L+N +   G V  +   + +M   G +SP H  +N ++  +      ++   
Sbjct: 336 PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG-LSPNHVTFNALIDGHISEGNFKEALK 394

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           +  MM+  G++P   SY + L+     ++ +       +++  G + V  +TY+ + +  
Sbjct: 395 MFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG-VCVGRITYTGMIDGL 453

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK----KKDMMRLWKLQKDNCK 311
            K G  D+A++ L +        D V Y+ +I+ +  +G+    K+ + R++++      
Sbjct: 454 CKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLS--- 510

Query: 312 KQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAET 371
                 Y T++    ++G L+EA ++     L G+T D    N+L+    + G + +AE 
Sbjct: 511 -PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 569

Query: 372 MLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSI 431
            +R M   G  P   S+  + +G+       KAF  F E   V     G  P      S+
Sbjct: 570 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV-----GHHPTFFTYGSL 624

Query: 432 LSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLIKLYVRCG 473
           L  +     + E E F+ SL  V  +++  MY +L+    + G
Sbjct: 625 LKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 667



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 170/430 (39%), Gaps = 73/430 (16%)

Query: 90  ALQVSEWMSSKGLCPILPGDRAVQL-----ELIGRVRGLESAESYFQNLS-DSDKTEKVH 143
           AL+  +W+  +   P L  D  VQL      ++ R R  + A    + LS  S K+  V 
Sbjct: 93  ALKFLKWVVKQ---PGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVF 149

Query: 144 GALLNCYVMA-----------------GSVDKSLSQMQKMKDMGFVSPLHY--NNIMSLY 184
           GAL+  Y +                  G +  SL   + M   GF +P  Y  N I+   
Sbjct: 150 GALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGF-NPSVYTCNAILGSV 208

Query: 185 TRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVD 244
            ++ +   V   L  M +  + PD+ ++ I +N   A    E    L++K+E  G  A  
Sbjct: 209 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSG-YAPT 267

Query: 245 WMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK 304
            +TY+TV ++Y K G    A+  L   + K    D   YN +I     L +   + + + 
Sbjct: 268 IVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIH---DLCRSNRIAKGYL 324

Query: 305 LQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKG 364
           L +D  K+ ++   +T                                 N L+ G+S +G
Sbjct: 325 LLRDMRKRMIHPNEVTY--------------------------------NTLINGFSNEG 352

Query: 365 LIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPK 424
            +  A  +L  M+  G +P   +++ +  GH+++ N ++A + F      + E KG  P 
Sbjct: 353 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-----YMMEAKGLTPS 407

Query: 425 SDVVSSILSWVTDNRDIEEVEDFVNSLKK-VMSMNRDMYLSLIKLYVRCG--REVDGVLE 481
                 +L  +  N + +    F   +K+  + + R  Y  +I    + G   E   +L 
Sbjct: 408 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLN 467

Query: 482 SMKADNIELD 491
            M  D I+ D
Sbjct: 468 EMSKDGIDPD 477



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 3/262 (1%)

Query: 153 AGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
           AG V ++   M+ M   G + + + ++ +++ Y  + +  K   V   M + G  P  F+
Sbjct: 561 AGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFT 620

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y   L        L   EK L+ +      AVD + Y+T+     K+G   KA+    + 
Sbjct: 621 YGSLLKGLCKGGHLREAEKFLKSLHAV-PAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEM 679

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNR-EYITMLGCLVKLGD 330
             ++   D+  Y  +IS     GK    +   K  +       N+  Y   +  + K G 
Sbjct: 680 VQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQ 739

Query: 331 LEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSI 390
            +       Q +  G+T D    N ++ GYSR G IEK   +L  M ++   P   +++I
Sbjct: 740 WKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNI 799

Query: 391 IASGHVAKENMEKAFQCFKEAL 412
           +  G+  ++++  +F  ++  +
Sbjct: 800 LLHGYSKRKDVSTSFLLYRSII 821


>AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:5434142-5436244 FORWARD
           LENGTH=642
          Length = 642

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 155/369 (42%), Gaps = 47/369 (12%)

Query: 124 ESAESYFQNLSDS--DKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHY---- 177
           +SA   F  + D+    TEK++  LL  Y   G V+K+L   ++MK  G  SP  Y    
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAG-CSPTVYTYTE 308

Query: 178 ---------------------------------NNIMSLYTRTEQHEKVPDVLAMMKEDG 204
                                            NN+M++  +  + E++ +V + M    
Sbjct: 309 LIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWR 368

Query: 205 VSPDIFSYRICLNS-YGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
            +P + SY   + + + +++ +  +    +K++ +  ++    TYS + + Y K    +K
Sbjct: 369 CTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKAD-SVSPSEFTYSILIDGYCKTNRVEK 427

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLG 323
           AL+ L++ ++K +     AY  +I+      + +    L+K  K+N     +R Y  M+ 
Sbjct: 428 ALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIK 487

Query: 324 CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
              K G L EA  L  + +  G+  D    N L+ G  + G+I +A ++LR M + G   
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547

Query: 384 TPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEE 443
             NS +II +G        +A + F+       ++ G +P     +++L         EE
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFE-----TIKHSGIKPDGVTYNTLLGCFAHAGMFEE 602

Query: 444 VEDFVNSLK 452
               +  +K
Sbjct: 603 AARMMREMK 611



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 247 TYSTVANFYVKAGLKDKAL-IYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKL 305
           TY++V    ++ G  +K   +Y + C +     D + Y+ +IS Y  LG+    +RL+  
Sbjct: 199 TYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDE 258

Query: 306 QKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGL 365
            KDNC +   + Y T+LG   K+G +E+A  L  + + +G +        L+ G  + G 
Sbjct: 259 MKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGR 318

Query: 366 IEKAETMLRSMVDKGKTP 383
           +++A    + M+  G TP
Sbjct: 319 VDEAYGFYKDMLRDGLTP 336


>AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4670178-4672826 REVERSE
           LENGTH=798
          Length = 798

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 156/342 (45%), Gaps = 25/342 (7%)

Query: 70  RDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESY 129
           R Q+L+  V  LRT          SEW   K + P +    ++ +    ++  ++ A+S+
Sbjct: 199 RQQKLEDAVLFLRT----------SEW---KDIGPSVVSFNSI-MSGYCKLGFVDMAKSF 244

Query: 130 FQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYT 185
           F  +        V  H  L+N   + GS+ ++L     M   G V P  + YN +   + 
Sbjct: 245 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHG-VEPDSVTYNILAKGFH 303

Query: 186 RTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDW 245
                    +V+  M + G+SPD+ +Y I L       +++    LL+ + + G      
Sbjct: 304 LLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSI 363

Query: 246 MTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKL 305
           +  S + +   K G  D+AL    + +      D VAY+ +I     LGK    M LW L
Sbjct: 364 IPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFD--MALW-L 420

Query: 306 QKDNCKKQL---NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSR 362
             + C K++   +R +  +L  L + G L EA  LL     SG T D  + NI++ GY++
Sbjct: 421 YDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAK 480

Query: 363 KGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
            G IE+A  + + +++ G TP+  +++ +  G+   +N+ +A
Sbjct: 481 SGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 522



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 148/364 (40%), Gaps = 52/364 (14%)

Query: 167 KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLE 226
           KD+G  S + +N+IMS Y +    +        + + G+ P ++S+ I +N       + 
Sbjct: 216 KDIG-PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIA 274

Query: 227 NMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHM 286
              +L   +   G +  D +TY+ +A  +   G+   A   ++   DK    D + Y  +
Sbjct: 275 EALELASDMNKHG-VEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTIL 333

Query: 287 ISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI----TMLGCLVKLGDLEEAEKLLGQWE 342
           +     LG   DM  +  L KD   +      I     ML  L K G ++EA  L  Q +
Sbjct: 334 LCGQCQLGNI-DMGLV--LLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMK 390

Query: 343 LSGNTYDFK------------------------------VPN-----ILLIGYSRKGLIE 367
             G + D                                +PN      LL+G  +KG++ 
Sbjct: 391 ADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLL 450

Query: 368 KAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDV 427
           +A ++L S++  G+T     ++I+  G+     +E+A + FK  +       G  P    
Sbjct: 451 EARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVI-----ETGITPSVAT 505

Query: 428 VSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLIKLYVRCG--REVDGVLESMK 484
            +S++      ++I E    ++ +K   ++ +   Y +L+  Y  CG  + +D +   MK
Sbjct: 506 FNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMK 565

Query: 485 ADNI 488
           A+ I
Sbjct: 566 AEGI 569



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 12/210 (5%)

Query: 247 TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQ 306
           TYSTV +   +    + A+++L+  E K      V++N ++S Y  LG   DM + +   
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFV-DMAKSFFCT 247

Query: 307 KDNCK--KQLNREYITMLG-CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRK 363
              C     +    I + G CLV  G + EA +L       G   D    NIL  G+   
Sbjct: 248 VLKCGLVPSVYSHNILINGLCLV--GSIAEALELASDMNKHGVEPDSVTYNILAKGFHLL 305

Query: 364 GLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRP 423
           G+I  A  ++R M+DKG +P   +++I+  G     N++      K+ L+     +G+  
Sbjct: 306 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLS-----RGFEL 360

Query: 424 KSDVVSSI-LSWVTDNRDIEEVEDFVNSLK 452
            S +  S+ LS +     I+E     N +K
Sbjct: 361 NSIIPCSVMLSGLCKTGRIDEALSLFNQMK 390



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/425 (20%), Positives = 179/425 (42%), Gaps = 28/425 (6%)

Query: 88  TQALQVSEWMSSKGLCP--ILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKV--H 143
            +AL+++  M+  G+ P  +     A    L+G + G   A    +++ D   +  V  +
Sbjct: 274 AEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISG---AWEVIRDMLDKGLSPDVITY 330

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFV--SPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
             LL      G++D  L  ++ M   GF   S +  + ++S   +T + ++   +   MK
Sbjct: 331 TILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMK 390

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
            DG+SPD+ +Y I ++        +    L +++  +  I  +  T+  +     + G+ 
Sbjct: 391 ADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEM-CDKRILPNSRTHGALLLGLCQKGML 449

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
            +A   L          D V YN +I  YA  G  ++ + L+K+  +         + ++
Sbjct: 450 LEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSL 509

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +    K  ++ EA K+L   +L G          L+  Y+  G  +  + + R M  +G 
Sbjct: 510 IYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGI 569

Query: 382 TPTPNSWSIIASG-----------HVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
            PT  ++S+I  G           HV +   E+ F+  K+ L  + E++G  P     ++
Sbjct: 570 PPTNVTYSVIFKGLCRGWKHENCNHVLR---ERIFEKCKQGLRDM-ESEGIPPDQITYNT 625

Query: 431 ILSWVTDNRDIEEVEDFVNSLK-KVMSMNRDMYLSLIKLYVRCG--REVDGVLESMKADN 487
           I+ ++   + +     F+  +K + +  +   Y  LI      G  R+ D  + S++  N
Sbjct: 626 IIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQN 685

Query: 488 IELDE 492
           + L +
Sbjct: 686 VSLSK 690


>AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4669784-4672826 REVERSE
           LENGTH=806
          Length = 806

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 156/342 (45%), Gaps = 25/342 (7%)

Query: 70  RDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESY 129
           R Q+L+  V  LRT          SEW   K + P +    ++ +    ++  ++ A+S+
Sbjct: 199 RQQKLEDAVLFLRT----------SEW---KDIGPSVVSFNSI-MSGYCKLGFVDMAKSF 244

Query: 130 FQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYT 185
           F  +        V  H  L+N   + GS+ ++L     M   G V P  + YN +   + 
Sbjct: 245 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHG-VEPDSVTYNILAKGFH 303

Query: 186 RTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDW 245
                    +V+  M + G+SPD+ +Y I L       +++    LL+ + + G      
Sbjct: 304 LLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSI 363

Query: 246 MTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKL 305
           +  S + +   K G  D+AL    + +      D VAY+ +I     LGK    M LW L
Sbjct: 364 IPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFD--MALW-L 420

Query: 306 QKDNCKKQL---NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSR 362
             + C K++   +R +  +L  L + G L EA  LL     SG T D  + NI++ GY++
Sbjct: 421 YDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAK 480

Query: 363 KGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
            G IE+A  + + +++ G TP+  +++ +  G+   +N+ +A
Sbjct: 481 SGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 522



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 148/364 (40%), Gaps = 52/364 (14%)

Query: 167 KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLE 226
           KD+G  S + +N+IMS Y +    +        + + G+ P ++S+ I +N       + 
Sbjct: 216 KDIG-PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIA 274

Query: 227 NMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHM 286
              +L   +   G +  D +TY+ +A  +   G+   A   ++   DK    D + Y  +
Sbjct: 275 EALELASDMNKHG-VEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTIL 333

Query: 287 ISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI----TMLGCLVKLGDLEEAEKLLGQWE 342
           +     LG   DM  +  L KD   +      I     ML  L K G ++EA  L  Q +
Sbjct: 334 LCGQCQLGNI-DMGLV--LLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMK 390

Query: 343 LSGNTYDFK------------------------------VPN-----ILLIGYSRKGLIE 367
             G + D                                +PN      LL+G  +KG++ 
Sbjct: 391 ADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLL 450

Query: 368 KAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDV 427
           +A ++L S++  G+T     ++I+  G+     +E+A + FK  +       G  P    
Sbjct: 451 EARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVI-----ETGITPSVAT 505

Query: 428 VSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLIKLYVRCG--REVDGVLESMK 484
            +S++      ++I E    ++ +K   ++ +   Y +L+  Y  CG  + +D +   MK
Sbjct: 506 FNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMK 565

Query: 485 ADNI 488
           A+ I
Sbjct: 566 AEGI 569



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 12/210 (5%)

Query: 247 TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQ 306
           TYSTV +   +    + A+++L+  E K      V++N ++S Y  LG   DM + +   
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFV-DMAKSFFCT 247

Query: 307 KDNCK--KQLNREYITMLG-CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRK 363
              C     +    I + G CLV  G + EA +L       G   D    NIL  G+   
Sbjct: 248 VLKCGLVPSVYSHNILINGLCLV--GSIAEALELASDMNKHGVEPDSVTYNILAKGFHLL 305

Query: 364 GLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRP 423
           G+I  A  ++R M+DKG +P   +++I+  G     N++      K+ L+     +G+  
Sbjct: 306 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLS-----RGFEL 360

Query: 424 KSDVVSSI-LSWVTDNRDIEEVEDFVNSLK 452
            S +  S+ LS +     I+E     N +K
Sbjct: 361 NSIIPCSVMLSGLCKTGRIDEALSLFNQMK 390



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/425 (20%), Positives = 179/425 (42%), Gaps = 28/425 (6%)

Query: 88  TQALQVSEWMSSKGLCP--ILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKV--H 143
            +AL+++  M+  G+ P  +     A    L+G + G   A    +++ D   +  V  +
Sbjct: 274 AEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISG---AWEVIRDMLDKGLSPDVITY 330

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFV--SPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
             LL      G++D  L  ++ M   GF   S +  + ++S   +T + ++   +   MK
Sbjct: 331 TILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMK 390

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
            DG+SPD+ +Y I ++        +    L +++  +  I  +  T+  +     + G+ 
Sbjct: 391 ADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEM-CDKRILPNSRTHGALLLGLCQKGML 449

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
            +A   L          D V YN +I  YA  G  ++ + L+K+  +         + ++
Sbjct: 450 LEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSL 509

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +    K  ++ EA K+L   +L G          L+  Y+  G  +  + + R M  +G 
Sbjct: 510 IYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGI 569

Query: 382 TPTPNSWSIIASG-----------HVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
            PT  ++S+I  G           HV +   E+ F+  K+ L  + E++G  P     ++
Sbjct: 570 PPTNVTYSVIFKGLCRGWKHENCNHVLR---ERIFEKCKQGLRDM-ESEGIPPDQITYNT 625

Query: 431 ILSWVTDNRDIEEVEDFVNSLK-KVMSMNRDMYLSLIKLYVRCG--REVDGVLESMKADN 487
           I+ ++   + +     F+  +K + +  +   Y  LI      G  R+ D  + S++  N
Sbjct: 626 IIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQN 685

Query: 488 IELDE 492
           + L +
Sbjct: 686 VSLSK 690


>AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:42114-44303 REVERSE
           LENGTH=729
          Length = 729

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 172/401 (42%), Gaps = 15/401 (3%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS 136
           ++  L    ++ +A +V   M   GL P     R++ +E   +   +E+ E  F ++   
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVET-EKVFSDMRSR 369

Query: 137 DKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP-LHYNNIMSLYTRTEQHEKV 193
           D    +    ++++ +  +G++DK+L     +K+ G +   + Y  ++  Y R       
Sbjct: 370 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVA 429

Query: 194 PDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVAN 253
            ++   M + G + D+ +Y   L+    R  L   +KL  ++ TE  +  D  T + + +
Sbjct: 430 MNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEM-TERALFPDSYTLTILID 488

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQ 313
            + K G    A+   +K ++K  + D V YN ++  +  +G       +W    D   K+
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA---DMVSKE 545

Query: 314 L---NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
           +      Y  ++  L   G L EA ++  +           + N ++ GY R G     E
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
           + L  M+ +G  P   S++ +  G V +ENM KAF   K+   +  E  G  P     +S
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKK---MEEEQGGLVPDVFTYNS 662

Query: 431 ILSWVTDNRDIEEVEDFVNSL-KKVMSMNRDMYLSLIKLYV 470
           IL        ++E E  +  + ++ ++ +R  Y  +I  +V
Sbjct: 663 ILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFV 703



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 165/419 (39%), Gaps = 61/419 (14%)

Query: 37  NRRNLYSRISPLGDPSLSVVPVL---ENWLQEGHAVRDQ---ELQRIVKTLRTRKRFTQA 90
           N RN   R++PL     +VV VL    N L  G    DQ          T  +       
Sbjct: 68  NVRNHLIRLNPL-----AVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHI 122

Query: 91  LQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCY 150
           L  S  +S    C +    R ++   + R+  + S +S F N   +D    V   L+  Y
Sbjct: 123 LVRSGRLSDAQSCLL----RMIRRSGVSRLEIVNSLDSTFSNCGSNDS---VFDLLIRTY 175

Query: 151 VMAGSVDKSLSQMQKMKDMGFVSPLHYNNIM---------------------------SL 183
           V A  + ++      ++  GF   +   N +                           ++
Sbjct: 176 VQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINV 235

Query: 184 YT---------RTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEK 234
           YT         +  + EKV   L+ ++E GV PDI +Y   +++Y ++  +E   +L+  
Sbjct: 236 YTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNA 295

Query: 235 IETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG 294
           +  +G  +    TY+TV N   K G  ++A     +        D+  Y  ++       
Sbjct: 296 MPGKG-FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEAC--- 351

Query: 295 KKKDMMRLWKLQKDNCKKQLNREYI---TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFK 351
           KK D++   K+  D   + +  + +   +M+    + G+L++A       + +G   D  
Sbjct: 352 KKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNV 411

Query: 352 VPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           +  IL+ GY RKG+I  A  +   M+ +G      +++ I  G   ++ + +A + F E
Sbjct: 412 IYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 16/159 (10%)

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           M+  L K G +E+    L Q +  G   D    N L+  YS KGL+E+A  ++ +M  KG
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRD 440
            +P   +++ + +G       E+A + F E L       G  P S    S+L       D
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEML-----RSGLSPDSTTYRSLLMEACKKGD 355

Query: 441 IEEVEDFVNSLKKVMSMNRDM------YLSLIKLYVRCG 473
           + E E   + ++     +RD+      + S++ L+ R G
Sbjct: 356 VVETEKVFSDMR-----SRDVVPDLVCFSSMMSLFTRSG 389


>AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6666249-6668963 FORWARD
           LENGTH=904
          Length = 904

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 142/314 (45%), Gaps = 13/314 (4%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           + +L+  Y   G ++++    + +K+   V+  H Y  +M  Y RT Q      V   M 
Sbjct: 299 YTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMI 358

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           E GV  +       +N Y     L   E++  ++  +  +  D  TY+T+ + Y +AG  
Sbjct: 359 EIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRM-NDWSLKPDHHTYNTLVDGYCRAGYV 417

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI-- 319
           D+AL    +   K      + YN ++  Y+ +G   D++ LWK+     K+ +N + I  
Sbjct: 418 DEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMM---LKRGVNADEISC 474

Query: 320 -TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
            T+L  L KLGD  EA KL       G   D    N+++ G  +   + +A+ +L ++  
Sbjct: 475 STLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNI 534

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDN 438
               P   ++  ++ G+    N+++AF     A+    E KG  P  ++ ++++S     
Sbjct: 535 FRCKPAVQTYQALSHGYYKVGNLKEAF-----AVKEYMERKGIFPTIEMYNTLISGAFKY 589

Query: 439 RDIEEVEDFVNSLK 452
           R + +V D V  L+
Sbjct: 590 RHLNKVADLVIELR 603



 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 96/213 (45%), Gaps = 5/213 (2%)

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           VSPD+F+  I +N+Y    +++      ++ E+   + ++ +TY+++ N Y   G  +  
Sbjct: 221 VSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGM 280

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGC 324
              L+   ++   R+ V Y  +I  Y   G  ++   +++L K+         Y  ++  
Sbjct: 281 TRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDG 340

Query: 325 LVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPT 384
             + G + +A ++       G   +  + N L+ GY + G + +AE +   M D    P 
Sbjct: 341 YCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPD 400

Query: 385 PNSWSIIASGHVAKENMEKAFQ-----CFKEAL 412
            ++++ +  G+     +++A +     C KE +
Sbjct: 401 HHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVV 433


>AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2321740-2324382 REVERSE
           LENGTH=880
          Length = 880

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 148/344 (43%), Gaps = 49/344 (14%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           + AL+N Y   G V  +   +  M+       +  +N +M    R  +  K   +L  M 
Sbjct: 374 YNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRML 433

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           ++G+SPDI SY + ++       +    KLL  +    DI  D +T++ + N + K G  
Sbjct: 434 DNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCF-DIEPDCLTFTAIINAFCKQGKA 492

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK----------------- 304
           D A  +L     K    D V    +I     +GK +D + + +                 
Sbjct: 493 DVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVI 552

Query: 305 --LQKDNCK--------KQLNR--------EYITMLGCLVKLGDLEEAEKLLGQWELSG- 345
             +    CK         ++N+         Y T++  L++ GD+  + ++L   +LSG 
Sbjct: 553 LDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGC 612

Query: 346 --NTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEK 403
             N Y +    I++ G  + G +E+AE +L +M D G +P   +++++  G+V    +++
Sbjct: 613 LPNVYPY---TIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDR 669

Query: 404 AFQCFKEALAVLAENKGWRPKSDVVSSIL-SWVTDNRDIEEVED 446
           A     E +  + E +G+     + SS+L  +V   + I+  E+
Sbjct: 670 AL----ETVRAMVE-RGYELNDRIYSSLLQGFVLSQKGIDNSEE 708


>AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active 2 |
           chr1:28119237-28122314 REVERSE LENGTH=862
          Length = 862

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 2/216 (0%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           Y  ++SL  R    +K  +V   M   GVS  +FSY   +N+YG     E   +LL++++
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYL-KKCEDKAYKRDAVAYNHMISHYASLGK 295
            E  I+   +TY+TV N   + GL  + L+ L  +   +  + D V YN ++S  A  G 
Sbjct: 204 NE-KISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGL 262

Query: 296 KKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
             +   +++   D         Y  ++    KL  LE+   LLG+    G+  D    N+
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           LL  Y++ G I++A  +   M   G TP  N++S++
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358



 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 141/326 (43%), Gaps = 11/326 (3%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS 136
           + K    R  + ++L++ ++M  +  C        + + L+GR   L+     F  +   
Sbjct: 111 VFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQ 170

Query: 137 DKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTE-QHE 191
             +  V  + AL+N Y   G  + SL  + +MK+   +SP  L YN +++   R     E
Sbjct: 171 GVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEK-ISPSILTYNTVINACARGGLDWE 229

Query: 192 KVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV 251
            +  + A M+ +G+ PDI +Y   L++   R  L +  +++ +   +G I  D  TYS +
Sbjct: 230 GLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG-LGDEAEMVFRTMNDGGIVPDLTTYSHL 288

Query: 252 ANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNC 310
              + K    +K    L +        D  +YN ++  YA  G  K+ M ++ ++Q   C
Sbjct: 289 VETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGC 348

Query: 311 KKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
               N  Y  +L    + G  ++  +L  + + S    D    NIL+  +   G  ++  
Sbjct: 349 TPNAN-TYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 407

Query: 371 TMLRSMVDKGKTPTPNSWS--IIASG 394
           T+   MV++   P   ++   I A G
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACG 433



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 160/387 (41%), Gaps = 47/387 (12%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMM 200
            +  LL+   + G  D++    + M D G V  L  Y++++  + +  + EKV D+L  M
Sbjct: 249 TYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEM 308

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
              G  PDI SY + L +Y     ++    +  +++  G    +  TYS + N + ++G 
Sbjct: 309 ASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG-CTPNANTYSVLLNLFGQSGR 367

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNREYI 319
            D       + +      DA  YN +I  +   G  K+++ L+  + ++N +  +     
Sbjct: 368 YDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEG 427

Query: 320 TMLGCLVKLGDLEEAEKLL----------------------GQWEL-------------S 344
            +  C  K G  E+A K+L                      GQ  L              
Sbjct: 428 IIFAC-GKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV 486

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           G+    +  + LL  ++R GL++++E +L  +VD G     ++++     +      E+A
Sbjct: 487 GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEA 546

Query: 405 FQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDM-YL 463
            + +     V  E     P    + ++LS  +  R ++E  +    +K    +   M Y 
Sbjct: 547 VKTY-----VDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYC 601

Query: 464 SLIKLYVRCGR--EVDGVLESMKADNI 488
            ++ +Y +  R  +V+ +LE M ++ +
Sbjct: 602 MMLAVYGKTERWDDVNELLEEMLSNRV 628


>AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 139/326 (42%), Gaps = 42/326 (12%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  ++N Y   G +DK    ++ MK  G     + Y +I+ L  R  +  +  +  + M 
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G+ PD   Y   ++ +  R D+    K   ++ +  DI  D +TY+ + + + + G  
Sbjct: 344 RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDM 402

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK----------------L 305
            +A     +   K  + D+V +  +I+ Y   G  KD  R+                  L
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 306 QKDNCKK-------QLNRE------------YITMLGCLVKLGDLEEAEKLLGQWELSGN 346
               CK+       +L  E            Y +++  L K G++EEA KL+G++E +G 
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
             D      L+  Y + G ++KA+ +L+ M+ KG  PT  +++++ +G      +E   +
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582

Query: 407 CFKEALAVLAENKGWRPKSDVVSSIL 432
                LA     KG  P +   +S++
Sbjct: 583 LLNWMLA-----KGIAPNATTFNSLV 603



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 147/346 (42%), Gaps = 24/346 (6%)

Query: 74  LQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRV--RG-LESAESYF 130
           L RI K     + F++       M  +G+ P    D  V   LI     RG + +A  +F
Sbjct: 326 LCRICKLAEAEEAFSE-------MIRQGILP----DTVVYTTLIDGFCKRGDIRAASKFF 374

Query: 131 QNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRT 187
             +   D T  V  + A+++ +   G + ++     +M   G     + +  +++ Y + 
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434

Query: 188 EQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMT 247
              +    V   M + G SP++ +Y   ++      DL++  +LL ++   G +  +  T
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG-LQPNIFT 493

Query: 248 YSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQK 307
           Y+++ N   K+G  ++A+  + + E      D V Y  ++  Y   G   +M +  ++ K
Sbjct: 494 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG---EMDKAQEILK 550

Query: 308 DNCKKQLNREYIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKG 364
           +   K L    +T   ++      G LE+ EKLL      G   +    N L+  Y  + 
Sbjct: 551 EMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRN 610

Query: 365 LIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            ++ A  + + M  +G  P   ++  +  GH    NM++A+  F+E
Sbjct: 611 NLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 135/313 (43%), Gaps = 16/313 (5%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN ++    +  + ++   +L +M+  G +PD+ SY   +N Y    +L+ + KL+E ++
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
            +G +  +   Y ++     +     +A     +   +    D V Y  +I  +    K+
Sbjct: 309 RKG-LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC---KR 364

Query: 297 KDMMRLWKLQKDNCKKQLNRE---YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
            D+    K   +   + +  +   Y  ++    ++GD+ EA KL  +    G   D    
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
             L+ GY + G ++ A  +   M+  G +P   +++ +  G   + +++ A +   E   
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484

Query: 414 VLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRD--MYLSLIKLYVR 471
           +     G +P     +SI++ +  + +IEE    V   +    +N D   Y +L+  Y +
Sbjct: 485 I-----GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCK 538

Query: 472 CGREVDGVLESMK 484
            G E+D   E +K
Sbjct: 539 SG-EMDKAQEILK 550



 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 240 DIAVDW--MTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK 297
           ++ V W   +Y+ V +F  + G   +A   L   E K Y  D ++Y+ +++ Y   G+  
Sbjct: 239 EVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELD 298

Query: 298 DMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILL 357
            + +L ++ K    K  +  Y +++G L ++  L EAE+   +    G   D  V   L+
Sbjct: 299 KVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLI 358

Query: 358 IGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAE 417
            G+ ++G I  A      M  +  TP   +++ I SG     +M +A + F E       
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC---- 414

Query: 418 NKGWRPKSDVVSSILS 433
            KG  P S   + +++
Sbjct: 415 -KGLEPDSVTFTELIN 429


>AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 139/326 (42%), Gaps = 42/326 (12%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  ++N Y   G +DK    ++ MK  G     + Y +I+ L  R  +  +  +  + M 
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G+ PD   Y   ++ +  R D+    K   ++ +  DI  D +TY+ + + + + G  
Sbjct: 344 RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDM 402

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK----------------L 305
            +A     +   K  + D+V +  +I+ Y   G  KD  R+                  L
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 306 QKDNCKK-------QLNRE------------YITMLGCLVKLGDLEEAEKLLGQWELSGN 346
               CK+       +L  E            Y +++  L K G++EEA KL+G++E +G 
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
             D      L+  Y + G ++KA+ +L+ M+ KG  PT  +++++ +G      +E   +
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582

Query: 407 CFKEALAVLAENKGWRPKSDVVSSIL 432
                LA     KG  P +   +S++
Sbjct: 583 LLNWMLA-----KGIAPNATTFNSLV 603



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 147/346 (42%), Gaps = 24/346 (6%)

Query: 74  LQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRV--RG-LESAESYF 130
           L RI K     + F++       M  +G+ P    D  V   LI     RG + +A  +F
Sbjct: 326 LCRICKLAEAEEAFSE-------MIRQGILP----DTVVYTTLIDGFCKRGDIRAASKFF 374

Query: 131 QNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRT 187
             +   D T  V  + A+++ +   G + ++     +M   G     + +  +++ Y + 
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434

Query: 188 EQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMT 247
              +    V   M + G SP++ +Y   ++      DL++  +LL ++   G +  +  T
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG-LQPNIFT 493

Query: 248 YSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQK 307
           Y+++ N   K+G  ++A+  + + E      D V Y  ++  Y   G   +M +  ++ K
Sbjct: 494 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG---EMDKAQEILK 550

Query: 308 DNCKKQLNREYIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKG 364
           +   K L    +T   ++      G LE+ EKLL      G   +    N L+  Y  + 
Sbjct: 551 EMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRN 610

Query: 365 LIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            ++ A  + + M  +G  P   ++  +  GH    NM++A+  F+E
Sbjct: 611 NLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 135/313 (43%), Gaps = 16/313 (5%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN ++    +  + ++   +L +M+  G +PD+ SY   +N Y    +L+ + KL+E ++
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
            +G +  +   Y ++     +     +A     +   +    D V Y  +I  +    K+
Sbjct: 309 RKG-LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC---KR 364

Query: 297 KDMMRLWKLQKDNCKKQLNRE---YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
            D+    K   +   + +  +   Y  ++    ++GD+ EA KL  +    G   D    
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
             L+ GY + G ++ A  +   M+  G +P   +++ +  G   + +++ A +   E   
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484

Query: 414 VLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRD--MYLSLIKLYVR 471
           +     G +P     +SI++ +  + +IEE    V   +    +N D   Y +L+  Y +
Sbjct: 485 I-----GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCK 538

Query: 472 CGREVDGVLESMK 484
            G E+D   E +K
Sbjct: 539 SG-EMDKAQEILK 550



 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 240 DIAVDW--MTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK 297
           ++ V W   +Y+ V +F  + G   +A   L   E K Y  D ++Y+ +++ Y   G+  
Sbjct: 239 EVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELD 298

Query: 298 DMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILL 357
            + +L ++ K    K  +  Y +++G L ++  L EAE+   +    G   D  V   L+
Sbjct: 299 KVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLI 358

Query: 358 IGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAE 417
            G+ ++G I  A      M  +  TP   +++ I SG     +M +A + F E       
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC---- 414

Query: 418 NKGWRPKSDVVSSILS 433
            KG  P S   + +++
Sbjct: 415 -KGLEPDSVTFTELIN 429


>AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:2181717-2184449 FORWARD
           LENGTH=871
          Length = 871

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 147/341 (43%), Gaps = 15/341 (4%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  L+  +      D  L+  Q+M+++G+   +H +  ++  + +  + +    +L  MK
Sbjct: 171 YTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
              +  DI  Y +C++S+G    ++   K   +IE  G +  D +TY+++     KA   
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG-LKPDEVTYTSMIGVLCKANRL 289

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
           D+A+   +  E         AYN MI  Y S GK  +   L + Q+          Y  +
Sbjct: 290 DEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCI 349

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           L CL K+G ++EA K+  + +      +    NIL+    R G ++ A  +  SM   G 
Sbjct: 350 LTCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGL 408

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
            P   + +I+       + +++A   F+E      + K   P      S++  +     +
Sbjct: 409 FPNVRTVNIMVDRLCKSQKLDEACAMFEEM-----DYKVCTPDEITFCSLIDGLGK---V 460

Query: 442 EEVEDFVNSLKKVMS----MNRDMYLSLIKLYVRCGREVDG 478
             V+D     +K++      N  +Y SLIK +   GR+ DG
Sbjct: 461 GRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDG 501



 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 129/304 (42%), Gaps = 36/304 (11%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           +  +L C    G VD++L   ++MK     +   YN ++ +  R  + +   ++   M++
Sbjct: 346 YNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQK 405

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G+ P++ +  I ++       L+    + E+++ +     D +T+ ++ +   K G  D
Sbjct: 406 AGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK-VCTPDEITFCSLIDGLGKVGRVD 464

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLN------ 315
            A    +K  D   + +++ Y  +I ++ + G+K+D  +++K +   NC   L       
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524

Query: 316 ----------------------------REYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
                                       R Y  ++  L+K G   E  +L    +  G  
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D +  NI++ G+ + G + KA  +L  M  KG  PT  ++  +  G    + +++A+  
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644

Query: 408 FKEA 411
           F+EA
Sbjct: 645 FEEA 648



 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 144/341 (42%), Gaps = 15/341 (4%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQL--ELIGRVRGLESAESYFQNLS 134
           ++  L    +   A ++ + M   GL    P  R V +  + + + + L+ A + F+ + 
Sbjct: 383 LIDMLCRAGKLDTAFELRDSMQKAGL---FPNVRTVNIMVDRLCKSQKLDEACAMFEEMD 439

Query: 135 DSDKT--EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHE 191
               T  E    +L++     G VD +    +KM D     + + Y +++  +    + E
Sbjct: 440 YKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKE 499

Query: 192 KVPDVLAMMKEDGVSPDI---FSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTY 248
               +   M     SPD+    +Y  C+   G   + E    + E+I+    +  D  +Y
Sbjct: 500 DGHKIYKDMINQNCSPDLQLLNTYMDCMFKAG---EPEKGRAMFEEIKARRFVP-DARSY 555

Query: 249 STVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKD 308
           S + +  +KAG  ++        +++    D  AYN +I  +   GK     +L +  K 
Sbjct: 556 SILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKT 615

Query: 309 NCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEK 368
              +     Y +++  L K+  L+EA  L  + +      +  + + L+ G+ + G I++
Sbjct: 616 KGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDE 675

Query: 369 AETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
           A  +L  ++ KG TP   +W+ +    V  E + +A  CF+
Sbjct: 676 AYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 142/340 (41%), Gaps = 11/340 (3%)

Query: 117 IGRVRGLESAESYFQNLSDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP 174
           +G+V  ++ A   ++ + DSD      V+ +L+  +   G  +      + M +      
Sbjct: 457 LGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516

Query: 175 LHY-NNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
           L   N  M    +  + EK   +   +K     PD  SY I ++            +L  
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
            ++ +G + +D   Y+ V + + K G  +KA   L++ + K ++   V Y  +I   A +
Sbjct: 577 SMKEQGCV-LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKI 635

Query: 294 GKKKDMMRLWKLQKDNCKKQLNRE-YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
            +  +   L++  K   + +LN   Y +++    K+G ++EA  +L +    G T +   
Sbjct: 636 DRLDEAYMLFEEAKSK-RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYT 694

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
            N LL    +   I +A    +SM +   TP   ++ I+ +G        KAF  ++E  
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQE-- 752

Query: 413 AVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLK 452
               + +G +P +   ++++S +    +I E     +  K
Sbjct: 753 ---MQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFK 789



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/292 (17%), Positives = 128/292 (43%), Gaps = 7/292 (2%)

Query: 105 ILPGDRAVQLELIGRVRGLESAESY--FQNLSDSDKT--EKVHGALLNCYVMAGSVDKSL 160
            +P  R+  + + G ++   + E+Y  F ++ +       + +  +++ +   G V+K+ 
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 161 SQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSY 219
             +++MK  GF  + + Y +++    + ++ ++   +    K   +  ++  Y   ++ +
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 220 GARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRD 279
           G    ++    +LE++  +G +  +  T++++ +  VKA   ++AL+  +  ++     +
Sbjct: 668 GKVGRIDEAYLILEELMQKG-LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPN 726

Query: 280 AVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLG 339
            V Y  +I+    + K       W+  +    K     Y TM+  L K G++ EA  L  
Sbjct: 727 QVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFD 786

Query: 340 QWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           +++ +G   D    N ++ G S       A ++      +G  P  N   ++
Sbjct: 787 RFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG-LPIHNKTCVV 837


>AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4294883-4296748 REVERSE
           LENGTH=621
          Length = 621

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 144/298 (48%), Gaps = 11/298 (3%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           AL++C+V  G + ++    ++M   G +SP  + Y +++  + +  Q +K   +L +M  
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRG-ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G  P+I ++ I +N Y   + +++  +L  K+   G +A D +TY+T+   + + G  +
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA-DTVTYNTLIQGFCELGKLE 439

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITM 321
            A    ++   +  + D V+Y  ++      G+ +  + ++ K++K   +  +    I +
Sbjct: 440 VAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIII 499

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
            G +     +++A  L     L G   D K  NI++ G  +KG + +A+ + R M + G 
Sbjct: 500 HG-MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGH 558

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
           +P   +++I+   H+ + +  K+ +  +E      +  G+   +  V  ++  ++D R
Sbjct: 559 SPNGCTYNILIRAHLGEGDATKSAKLIEE-----IKRCGFSVDASTVKMVVDMLSDGR 611



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 12/272 (4%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAM---MK 201
            L+N   + G V ++L  + +M +MG    L   N  +L      + KV D + +   M 
Sbjct: 147 TLINGLCLEGRVSEALELVDRMVEMGHKPTLITLN--ALVNGLCLNGKVSDAVLLIDRMV 204

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           E G  P+  +Y   L             +LL K+E E  I +D + YS + +   K G  
Sbjct: 205 ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME-ERKIKLDAVKYSIIIDGLCKDGSL 263

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT- 320
           D A     + E K +K D + Y  +I  +   G+  D     KL +D  K+++  + +  
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDG---AKLLRDMIKRKITPDVVAF 320

Query: 321 --MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
             ++ C VK G L EAE+L  +    G + D      L+ G+ ++  ++KA  ML  MV 
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           KG  P   +++I+ +G+     ++   + F++
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGLELFRK 412



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/292 (18%), Positives = 117/292 (40%), Gaps = 39/292 (13%)

Query: 175 LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNS---------------- 218
           + ++ + S+  RT+Q++ V D+   M+  G++ ++++  I +N                 
Sbjct: 73  IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGK 132

Query: 219 ---YGARSDLENMEKLLEKIETEGDIA-----VDWM----------TYSTVANFYVKAGL 260
               G   D      L+  +  EG ++     VD M          T + + N     G 
Sbjct: 133 IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGK 192

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
              A++ + +  +  ++ + V Y  ++      G+    M L +  ++   K    +Y  
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSI 252

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           ++  L K G L+ A  L  + E+ G   D  +   L+ G+   G  +    +LR M+ + 
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
            TP   ++S +    V +  + +A +  KE +      +G  P +   +S++
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMI-----QRGISPDTVTYTSLI 359


>AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:550340-552625 REVERSE
           LENGTH=761
          Length = 761

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/388 (19%), Positives = 164/388 (42%), Gaps = 45/388 (11%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMG-FVSPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
           V  AL +  +  G +++++    KMK    F      N ++  + +  + + V      M
Sbjct: 194 VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 253

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
              G  P +F+Y I ++      D+E    L E+++  G +  D +TY+++ + + K G 
Sbjct: 254 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG-LVPDTVTYNSMIDGFGKVGR 312

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDN----------- 309
            D  + + ++ +D   + D + YN +I+ +   GK    +  ++  K N           
Sbjct: 313 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372

Query: 310 -----CKKQLNRE-------------------YITMLGCLVKLGDLEEAEKLLGQWELSG 345
                CK+ + ++                   Y +++    K+G+L +A +L  +    G
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432

Query: 346 NTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAF 405
             ++      L+ G      +++AE +   M   G  P   S++ +  G V  +NM++A 
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492

Query: 406 QCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLS 464
           +   E      + +G +P   +  + +  +     IE  +  +N +K+  +  N  +Y +
Sbjct: 493 ELLNE-----LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 547

Query: 465 LIKLYVRCGREVDG--VLESMKADNIEL 490
           L+  Y + G   +G  +L+ MK  +IE+
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEV 575


>AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:25041901-25044849 REVERSE
           LENGTH=982
          Length = 982

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 103/487 (21%), Positives = 200/487 (41%), Gaps = 53/487 (10%)

Query: 45  ISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCP 104
           I  LG+  + V  +L    ++   +    L  +   L +++ +  AL   E M + G  P
Sbjct: 451 IDDLGNIEVKVESLLGEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLGCTP 510

Query: 105 ILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALL--NCYVMAGSVDKSLSQ 162
            LP      ++ + +   +E   S    + + D    V   L+  N        D + + 
Sbjct: 511 -LPFSYNSVIKCLFQENIIEDLASLVNIIQELDFVPDVDTYLIVVNELCKKNDRDAAFAI 569

Query: 163 MQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGA 221
           +  M+++G    +  Y++I+    +  +  +  +  A M E G+ PD  +Y I +N+Y  
Sbjct: 570 IDAMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYAR 629

Query: 222 RSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAV 281
              ++   +L+E++  +  +     TY+ + + +VK G+ +K   YL K  +     + V
Sbjct: 630 NGRIDEANELVEEV-VKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVV 688

Query: 282 AYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCL-------------VKL 328
            Y  +I H+   G  K    L+ L  +N  K  +  YIT+L  L             V+ 
Sbjct: 689 LYTALIGHFLKKGDFKFSFTLFGLMGENDIKHDHIAYITLLSGLWRAMARKKKRQVIVEP 748

Query: 329 GDLEEAEKL------------LGQW-------ELSGNTYDFKVPNI-----LLIGYSRKG 364
           G  +  ++L            LG +       E+ G      +PN+     ++ GY   G
Sbjct: 749 GKEKLLQRLIRTKPLVSIPSSLGNYGSKSFAMEVIGKVKKSIIPNLYLHNTIITGYCAAG 808

Query: 365 LIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPK 424
            +++A   L SM  +G  P   +++I+   H+   ++E A   F        E     P 
Sbjct: 809 RLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLF--------EGTNCEPD 860

Query: 425 SDVVSSILSWVTD-NRDIEEVEDFVNSLKKVMSMNRDMYLSLIK--LYVRCGREVDGVLE 481
             + S++L  + D  R ++ +   +   K  ++ N+D Y  L++   Y R   E   V++
Sbjct: 861 QVMYSTLLKGLCDFKRPLDALALMLEMQKSGINPNKDSYEKLLQCLCYSRLTMEAVKVVK 920

Query: 482 SMKADNI 488
            M A +I
Sbjct: 921 DMAALDI 927


>AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:12937253-12938836 REVERSE
           LENGTH=527
          Length = 527

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 129/303 (42%), Gaps = 22/303 (7%)

Query: 173 SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLL 232
           SP  +N+++S Y    Q+E    +   M EDGV PD F++   L + G    ++  E + 
Sbjct: 159 SPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIH 218

Query: 233 EKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS 292
             +  EG    D    + +   Y K G   KA    +   D    +D V++N M++ Y  
Sbjct: 219 RDLVKEG-FGYDVYVLNALVVMYAKCGDIVKA----RNVFDMIPHKDYVSWNSMLTGYLH 273

Query: 293 LGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
            G   + + +++L   N    +  + + +   L ++   +   +L G     G  ++  V
Sbjct: 274 HGLLHEALDIFRLMVQN---GIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGMEWELSV 330

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
            N L++ YS++G + +A  +   M+++       SW+ I S H    N  K F+    A 
Sbjct: 331 ANALIVLYSKRGQLGQACFIFDQMLERDTV----SWNAIISAHSKNSNGLKYFEQMHRAN 386

Query: 413 AVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDM--YLSLIKLYV 470
           A        +P      S+LS   +   +E+ E   + + K   ++  M  Y  ++ LY 
Sbjct: 387 A--------KPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYG 438

Query: 471 RCG 473
           R G
Sbjct: 439 RAG 441


>AT1G10910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3639908-3643974 FORWARD
           LENGTH=664
          Length = 664

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 174/427 (40%), Gaps = 62/427 (14%)

Query: 72  QELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQ 131
           Q+L  I++      R+   +Q+ EWM   G   I     +  ++ +G  + +  A   +Q
Sbjct: 99  QDLNVILRDFGISGRWQDLIQLFEWMQQHG--KISVSTYSSCIKFVG-AKNVSKALEIYQ 155

Query: 132 NLSDSDKTEKVH--GALLNCYVMAGSVDKSLSQMQKMKDMGF------------------ 171
           ++ D      V+   ++L+C V  G +D  +    +MK  G                   
Sbjct: 156 SIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVK 215

Query: 172 -------------------VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
                              +  + Y  ++++     + E+  + +  MK +G SP+I+ Y
Sbjct: 216 NGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHY 275

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCE 272
              LNSY  + D +  ++L+ ++++ G +    M  +T+   Y+K GL D++   L + E
Sbjct: 276 SSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMM-TTLLKVYIKGGLFDRSRELLSELE 334

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLE 332
              Y  + + Y  ++   +  GK ++   ++   K    +        M+  L +    +
Sbjct: 335 SAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFK 394

Query: 333 EAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIA 392
           EA++L    E +    D  + N +L  Y R G +E    M++ M ++  +P  N++ I+ 
Sbjct: 395 EAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILI 454

Query: 393 SGHVAKENMEKAFQCFKEALAVLA-------ENKGWRPKSDVVSSILSWVTDNRDIEEVE 445
                     K F   KE L +LA        +KG R + ++ SS++  +   R   E  
Sbjct: 455 ----------KYF--IKEKLHLLAYQTTLDMHSKGHRLEEELCSSLIYHLGKIRAQAEAF 502

Query: 446 DFVNSLK 452
              N L+
Sbjct: 503 SVYNMLR 509



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/331 (19%), Positives = 141/331 (42%), Gaps = 12/331 (3%)

Query: 176 HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKI 235
           H N+ ++  +   + ++  D L+ ++       +    + L  +G     +++ +L E +
Sbjct: 65  HSNSYLARKSAISEVQRSSDFLSSLQRLATVLKVQDLNVILRDFGISGRWQDLIQLFEWM 124

Query: 236 ETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK 295
           +  G I+V   TYS+   F V A    KAL   +   D++ K +    N ++S     GK
Sbjct: 125 QQHGKISVS--TYSSCIKF-VGAKNVSKALEIYQSIPDESTKINVYICNSILSCLVKNGK 181

Query: 296 KKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPN 354
               ++L+ ++++D  K  +      + GC+       +A +L+G+   +G   D  +  
Sbjct: 182 LDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGIQMDSVMYG 241

Query: 355 ILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAV 414
            +L   +  G  E+AE  ++ M  +G +P    +S + + +  K + +KA +   E  ++
Sbjct: 242 TVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSI 301

Query: 415 LAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDM-YLSLIKLYVRCG 473
                G  P   +++++L         +   + ++ L+       +M Y  L+    + G
Sbjct: 302 -----GLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAG 356

Query: 474 R--EVDGVLESMKADNIELDEEMEEILNSRL 502
           +  E   + + MK   +  D     I+ S L
Sbjct: 357 KLEEARSIFDDMKGKGVRSDGYANSIMISAL 387


>AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26201012-26203759 REVERSE
           LENGTH=915
          Length = 915

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 160/381 (41%), Gaps = 21/381 (5%)

Query: 121 RGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKS--LSQMQKMKDMGFVSPLH-Y 177
           R ++ A   F  + D +    V    +    + GS  KS  L+ +++M++ G    +H Y
Sbjct: 302 RRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTY 361

Query: 178 NNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIET 237
             ++       + EK  ++L  M E G+ P++ +Y   +N Y  R  +E+   ++E +E+
Sbjct: 362 TVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES 421

Query: 238 EGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK 297
              ++ +  TY+ +   Y K+ +  KA+  L K  ++    D V YN +I      G   
Sbjct: 422 R-KLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFD 479

Query: 298 DMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILL 357
              RL  L  D         Y +M+  L K   +EEA  L    E  G   +  +   L+
Sbjct: 480 SAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALI 539

Query: 358 IGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAE 417
            GY + G +++A  ML  M+ K   P   +++ +  G  A   +++         A L E
Sbjct: 540 DGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE---------ATLLE 590

Query: 418 NK----GWRPKSDVVSSILSWVTDNRDIEEV-EDFVNSLKKVMSMNRDMYLSLIKLYVRC 472
            K    G +P     + ++  +  + D +     F   L      +   Y + I+ Y R 
Sbjct: 591 EKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCRE 650

Query: 473 GREVDG--VLESMKADNIELD 491
           GR +D   ++  M+ + +  D
Sbjct: 651 GRLLDAEDMMAKMRENGVSPD 671



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 155/379 (40%), Gaps = 70/379 (18%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN +++   R    +++  V   M ED V P+I++Y   +N Y    ++E   + + KI 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI- 244

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
            E  +  D+ TY+++   Y +    D A     +   K  +R+ VAY H+I       + 
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304

Query: 297 KDMMRLW-KLQKDNC--------------------KKQLN--------------REYITM 321
            + M L+ K++ D C                     + LN                Y  +
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +  L      E+A +LLGQ    G   +    N L+ GY ++G+IE A  ++  M  +  
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424

Query: 382 TPTPNSWSIIASGHVAKENMEKAF------------------------QC----FKEA-- 411
           +P   +++ +  G+  K N+ KA                         QC    F  A  
Sbjct: 425 SPNTRTYNELIKGY-CKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query: 412 LAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL-KKVMSMNRDMYLSLIKLYV 470
           L  L  ++G  P     +S++  +  ++ +EE  D  +SL +K ++ N  MY +LI  Y 
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543

Query: 471 RCGR--EVDGVLESMKADN 487
           + G+  E   +LE M + N
Sbjct: 544 KAGKVDEAHLMLEKMLSKN 562



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 20/271 (7%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           G  D + S+ Q+M   G     H Y   +  Y R  +     D++A M+E+GVSPD+F+Y
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY-VKAGLK---------- 261
              +  YG          +L+++   G         S + +   +K G +          
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735

Query: 262 ------DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQL 314
                 D  +  L+K  + +   +A +Y  +I     +G  +   +++  +Q++      
Sbjct: 736 SNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPS 795

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
              +  +L C  KL    EA K++      G+    +   +L+ G  +KG  E+  ++ +
Sbjct: 796 ELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQ 855

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAF 405
           +++  G      +W II  G V K+ + +AF
Sbjct: 856 NLLQCGYYEDELAWKIIIDG-VGKQGLVEAF 885


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 151/334 (45%), Gaps = 7/334 (2%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMM 200
           ++  L+  ++       ++  +++MK+ G    +  YN+++   ++ ++ ++    L  M
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
            E+G+ P+ F+Y   ++ Y   S+  + +K ++++   G +  + +  + + N Y K G 
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG-VLPNKVLCTGLINEYCKKGK 572

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
             +A    +   D+    DA  Y  +++      K  D   +++  +          Y  
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           ++    KLG++++A  +  +    G T +  + N+LL G+ R G IEKA+ +L  M  KG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRD 440
             P   ++  I  G+    ++ +AF+ F E      + KG  P S V ++++       D
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDE-----MKLKGLVPDSFVYTTLVDGCCRLND 747

Query: 441 IEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGR 474
           +E       + KK  + +   + +LI    + G+
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 127/308 (41%), Gaps = 40/308 (12%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKED 203
            L+N Y   G V ++ S  + M D G +     Y  +M+   + ++ +   ++   M+  
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G++PD+FSY + +N +    +++    + +++  EG +  + + Y+ +   + ++G  +K
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEK 680

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLG 323
           A   L +   K    +AV Y  +I  Y   G   +  RL+   K       +  Y T++ 
Sbjct: 681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740

Query: 324 CLVKLGDLEEAEKLLG-----------------QW---------------ELSGNTYD-F 350
              +L D+E A  + G                  W                L   ++D F
Sbjct: 741 GCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRF 800

Query: 351 KVPN-----ILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAF 405
             PN     I++    ++G +E A+ +   M +    PT  +++ + +G+       + F
Sbjct: 801 GKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMF 860

Query: 406 QCFKEALA 413
             F EA+A
Sbjct: 861 PVFDEAIA 868



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/356 (20%), Positives = 150/356 (42%), Gaps = 12/356 (3%)

Query: 123 LESAESYFQNLSDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNN 179
           +E A++ F  +  S      + + +L+  Y    +V +    + +MK    V SP  Y  
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
           ++     +   +   +++  M   G  P++  Y   + ++   S   +  ++L++++ +G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 240 DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDM 299
            IA D   Y+++     KA   D+A  +L +  +   K +A  Y   IS Y    +    
Sbjct: 483 -IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA 541

Query: 300 MRLWKLQKDNCKKQLNREYIT-MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLI 358
            +  K  ++ C    N+   T ++    K G + EA          G   D K   +L+ 
Sbjct: 542 DKYVKEMRE-CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMN 600

Query: 359 GYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAEN 418
           G  +   ++ AE + R M  KG  P   S+ ++ +G     NM+KA   F E +      
Sbjct: 601 GLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV-----E 655

Query: 419 KGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLK-KVMSMNRDMYLSLIKLYVRCG 473
           +G  P   + + +L     + +IE+ ++ ++ +  K +  N   Y ++I  Y + G
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711



 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 144/339 (42%), Gaps = 9/339 (2%)

Query: 123 LESAESYFQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNN 179
           ++ AE  F+ +        V  +G L+N +   G++ K+ S   +M + G   + + YN 
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
           ++  + R+ + EK  ++L  M   G+ P+  +Y   ++ Y    DL    +L ++++ +G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 240 DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK---K 296
            +  D   Y+T+ +   +    ++A I +     K        +N +I+     GK   K
Sbjct: 728 -LVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785

Query: 297 KDMM-RLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
            +++ RL     D   K  +  Y  M+  L K G+LE A++L  Q + +           
Sbjct: 786 TEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVL 415
           LL GY + G   +   +    +  G  P    +S+I +  + +    KA     +  A  
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKN 905

Query: 416 AENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKV 454
           A + G +       ++LS      ++E  E  + ++ ++
Sbjct: 906 AVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRL 944


>AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8203873-8206341 REVERSE
           LENGTH=822
          Length = 822

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 145/313 (46%), Gaps = 26/313 (8%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYG--ARSDLENMEKLLEK 234
           Y  I+  Y+RT ++EK  D+   MKE G SP + +Y + L+ +G   RS    +  +L++
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRS-WRKILGVLDE 271

Query: 235 IETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG 294
           + ++G +  D  T STV +   + GL  +A  +  + +   Y+   V YN ++  +   G
Sbjct: 272 MRSKG-LKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAG 330

Query: 295 KKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPN 354
              + + + K  ++N     +  Y  ++   V+ G  +EA  ++      G   +     
Sbjct: 331 VYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYT 390

Query: 355 ILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS--GHVAKENMEKAFQCFKEAL 412
            ++  Y + G  ++A  +  SM + G  P   +++ + S  G  ++ N         E +
Sbjct: 391 TVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSN---------EMI 441

Query: 413 AVLAENK--GWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSM-----NRDMYLSL 465
            +L + K  G  P     +++L+ +  N+ +++   FVN + + M       +RD + +L
Sbjct: 442 KMLCDMKSNGCSPNRATWNTMLA-LCGNKGMDK---FVNRVFREMKSCGFEPDRDTFNTL 497

Query: 466 IKLYVRCGREVDG 478
           I  Y RCG EVD 
Sbjct: 498 ISAYGRCGSEVDA 510



 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 145/335 (43%), Gaps = 23/335 (6%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           L++ Y   GS   +     +M   GF + +  YN +++   R        +V++ MK  G
Sbjct: 497 LISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKG 556

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV--ANFYVKA-GLK 261
             P   SY + L  Y    +   +E++  +I+ EG I   WM   T+  ANF  +A    
Sbjct: 557 FKPTETSYSLMLQCYAKGGNYLGIERIENRIK-EGQIFPSWMLLRTLLLANFKCRALAGS 615

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMR-----LWKLQKDNCKKQLNR 316
           ++A    KK     YK D V +N M+S +     + +M       L  +++D     L  
Sbjct: 616 ERAFTLFKK---HGYKPDMVIFNSMLSIFT----RNNMYDQAEGILESIREDGLSPDL-V 667

Query: 317 EYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSM 376
            Y +++   V+ G+  +AE++L   E S    D    N ++ G+ R+GL+++A  ML  M
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727

Query: 377 VDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVT 436
            ++G  P   +++   SG+ A       F   ++ +  +A+N   RP       ++    
Sbjct: 728 TERGIRPCIFTYNTFVSGYTAM----GMFAEIEDVIECMAKND-CRPNELTFKMVVDGYC 782

Query: 437 DNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVR 471
                 E  DFV+ +K       D  +  + L VR
Sbjct: 783 RAGKYSEAMDFVSKIKTFDPCFDDQSIQRLALRVR 817



 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 157/385 (40%), Gaps = 73/385 (18%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN ++ ++ +   + +   VL  M+E+    D  +Y   + +Y  R+        + ++ 
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAY-VRAGFSKEAAGVIEMM 377

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
           T+  +  + +TY+TV + Y KAG +D+AL      ++     +   YN ++S      + 
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRS 437

Query: 297 KDMMR-LWKLQKDNCK-------------------KQLNREYITMLGCLV---------- 326
            +M++ L  ++ + C                    K +NR +  M  C            
Sbjct: 438 NEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTL 497

Query: 327 -----KLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
                + G   +A K+ G+   +G        N LL   +RKG     E ++  M  KG 
Sbjct: 498 ISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGF 557

Query: 382 TPTPNSWSII------ASGHVAKENMEKA--------------------FQCFKEALA-- 413
            PT  S+S++         ++  E +E                      F+C   ALA  
Sbjct: 558 KPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKC--RALAGS 615

Query: 414 ----VLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKK-VMSMNRDMYLSLIKL 468
                L +  G++P   + +S+LS  T N   ++ E  + S+++  +S +   Y SL+ +
Sbjct: 616 ERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDM 675

Query: 469 YVRCGR--EVDGVLESMKADNIELD 491
           YVR G   + + +L++++   ++ D
Sbjct: 676 YVRRGECWKAEEILKTLEKSQLKPD 700


>AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10670320-10672740 REVERSE
           LENGTH=806
          Length = 806

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 156/339 (46%), Gaps = 13/339 (3%)

Query: 147 LNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGV 205
           ++ +V A  ++K+L  +++M+ +G V + + YN ++  Y    + E+  ++L  M   G 
Sbjct: 284 IDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGC 343

Query: 206 SPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKAL 265
            PD  SY   +        +  +  L++K+  E  +  D +TY+T+ +   K    D+AL
Sbjct: 344 LPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEAL 403

Query: 266 IYLKKCEDKAYKRDAVAYN---HMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITML 322
            +LK  ++K ++ D + Y+   H +     + + KD++    L K +C   +   Y  ++
Sbjct: 404 WFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEM-LSKGHCPPDVV-TYTAVV 461

Query: 323 GCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKT 382
               +LG++++A+KLL      G+  +      LL G  R G   +A  M+    +   +
Sbjct: 462 NGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWS 521

Query: 383 PTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL-SWVTDNRDI 441
           P   ++S+I  G   +  + +A    +E +      KG+ P    ++ +L S   D R  
Sbjct: 522 PNSITYSVIMHGLRREGKLSEACDVVREMVL-----KGFFPGPVEINLLLQSLCRDGRTH 576

Query: 442 EEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGVL 480
           E  +     L K  ++N   + ++I  + +   E+D  L
Sbjct: 577 EARKFMEECLNKGCAINVVNFTTVIHGFCQ-NDELDAAL 614



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 153/375 (40%), Gaps = 61/375 (16%)

Query: 166 MKDMG-FVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSD 224
           MK  G + +P  ++ +M  Y+R  Q      VL +M+  GV P++      ++ +   + 
Sbjct: 233 MKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANR 292

Query: 225 LENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYN 284
           LE   + LE+++  G I  + +TY+ +   Y      ++A+  L+    K    D V+Y 
Sbjct: 293 LEKALRFLERMQVVG-IVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYY 351

Query: 285 HMISHYAS---LGKKKDMMR-------------------------------LWKLQKDNC 310
            ++ +      + + +D+M+                               LW L KD  
Sbjct: 352 TIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFL-KDAQ 410

Query: 311 KKQLNRE---YITMLGCLVKLGDLEEAEKLLGQWELSGNT-YDFKVPNILLIGYSRKGLI 366
           +K    +   Y  ++  L K G + EA+ L+ +    G+   D      ++ G+ R G +
Sbjct: 411 EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEV 470

Query: 367 EKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSD 426
           +KA+ +L+ M   G  P   S++ + +G        +A +     +  ++E   W P S 
Sbjct: 471 DKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEARE-----MMNMSEEHWWSPNSI 525

Query: 427 VVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGVLESMKAD 486
             S I+  +     + E  D V          R+M L   K +     E++ +L+S+  D
Sbjct: 526 TYSVIMHGLRREGKLSEACDVV----------REMVL---KGFFPGPVEINLLLQSLCRD 572

Query: 487 --NIELDEEMEEILN 499
               E  + MEE LN
Sbjct: 573 GRTHEARKFMEECLN 587



 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 134/347 (38%), Gaps = 45/347 (12%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNL-SD 135
           IV  L    R ++A  +   M SKG CP         +    R+  ++ A+   Q + + 
Sbjct: 424 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTH 483

Query: 136 SDKTEKV-HGALLNCYVMAGSVDKSLS--QMQKMKDMGFVSP--LHYNNIMSLYTRTEQH 190
             K   V + ALLN     G   KSL   +M  M +  + SP  + Y+ IM    R  + 
Sbjct: 484 GHKPNTVSYTALLNGMCRTG---KSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKL 540

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG----------- 239
            +  DV+  M   G  P      + L S           K +E+   +G           
Sbjct: 541 SEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTV 600

Query: 240 ----------DIAV-------------DWMTYSTVANFYVKAGLKDKALIYLKKCEDKAY 276
                     D A+             D  TY+T+ +   K G   +A   +KK   K  
Sbjct: 601 IHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGI 660

Query: 277 KRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEK 336
               V Y  +I  Y  +GK  D++ +  L+K   +++    Y  ++  L  LG LEEA+ 
Sbjct: 661 DPTPVTYRTVIHRYCQMGKVDDLVAI--LEKMISRQKCRTIYNQVIEKLCVLGKLEEADT 718

Query: 337 LLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
           LLG+   + +  D K    L+ GY +KG+   A  +   M ++   P
Sbjct: 719 LLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIP 765


>AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:1390049-1393760 FORWARD LENGTH=952
          Length = 952

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 164/375 (43%), Gaps = 21/375 (5%)

Query: 40  NLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSS 99
           NLY+++  +   +L V  V++   +EG     +    ++      K +  A  V E M  
Sbjct: 492 NLYTKVGKISK-ALEVSRVMK---EEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVK 547

Query: 100 KGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDK-----TEKVHGALLNCYVMAG 154
           +G+ P    D  +   +I    G+ + +   Q + +  K     T +    +++ Y  +G
Sbjct: 548 EGMKP----DVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 603

Query: 155 SVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYR 213
            + +SL     M+  G V  +H +N +++      Q EK  ++L  M   GVS +  +Y 
Sbjct: 604 DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYT 663

Query: 214 ICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED 273
             +  Y +  D     +   +++ EG + VD  TY  +     K+G    AL   K+   
Sbjct: 664 KIMQGYASVGDTGKAFEYFTRLQNEG-LDVDIFTYEALLKACCKSGRMQSALAVTKEMSA 722

Query: 274 KAYKRDAVAYNHMISHYASLG---KKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGD 330
           +   R++  YN +I  +A  G   +  D+++  +++K+  K  ++  Y + +    K GD
Sbjct: 723 RNIPRNSFVYNILIDGWARRGDVWEAADLIQ--QMKKEGVKPDIH-TYTSFISACSKAGD 779

Query: 331 LEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSI 390
           +  A + + + E  G   + K    L+ G++R  L EKA +    M   G  P    +  
Sbjct: 780 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHC 839

Query: 391 IASGHVAKENMEKAF 405
           + +  +++ ++ +A+
Sbjct: 840 LLTSLLSRASIAEAY 854



 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/367 (18%), Positives = 157/367 (42%), Gaps = 10/367 (2%)

Query: 111 AVQLELIGRVRGLESAESYFQNLSDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMKD 168
            + ++  GR   +  A   F+ +       T +++ +L++ Y +   +D++LS ++KMK+
Sbjct: 313 GLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKE 372

Query: 169 MGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLEN 227
            G  +S + Y+ I+  +++    E         K    + +   Y   + ++    ++E 
Sbjct: 373 EGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMER 432

Query: 228 MEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMI 287
            E L+ ++E EG I      Y T+ + Y     + K L+  K+ ++  +    V Y  +I
Sbjct: 433 AEALVREMEEEG-IDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLI 491

Query: 288 SHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
           + Y  +GK    + + ++ K+   K   + Y  M+   VKL D   A  +       G  
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMK 551

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D  + N ++  +   G +++A   ++ M      PT  ++  I  G+    +M ++ + 
Sbjct: 552 PDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEV 611

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLI 466
           F      +    G  P     + +++ + + R +E+  + ++ +    +S N   Y  ++
Sbjct: 612 FD-----MMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIM 666

Query: 467 KLYVRCG 473
           + Y   G
Sbjct: 667 QGYASVG 673



 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 134/292 (45%), Gaps = 12/292 (4%)

Query: 124 ESAESYFQNLSDSDKT--EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNI 180
           E+A+ +F       KT    ++G ++  +    +++++ + +++M++ G  +P+  Y+ +
Sbjct: 396 EAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTM 455

Query: 181 MSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE--KIETE 238
           M  YT     +K   V   +KE G +P + +Y   +N Y   + +  + K LE  ++  E
Sbjct: 456 MDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLY---TKVGKISKALEVSRVMKE 512

Query: 239 GDIAVDWMTYSTVANFYVKAGLKD--KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
             +  +  TYS + N +VK  LKD   A    +    +  K D + YN++IS +  +G  
Sbjct: 513 EGVKHNLKTYSMMINGFVK--LKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNM 570

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
              ++  K  +    +   R ++ ++    K GD+  + ++       G        N L
Sbjct: 571 DRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGL 630

Query: 357 LIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCF 408
           + G   K  +EKA  +L  M   G +   ++++ I  G+ +  +  KAF+ F
Sbjct: 631 INGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYF 682


>AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4184163-4186076 REVERSE
           LENGTH=637
          Length = 637

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 149/344 (43%), Gaps = 11/344 (3%)

Query: 73  ELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQN 132
           +  R+   +   K++   L + + M  KG+   L    ++ +    R R L  A S    
Sbjct: 90  DFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLY-TLSIMINCFCRCRKLCLAFSAMGK 148

Query: 133 LS--DSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL-HYNNIMSLYTRTEQ 189
           +     +        L+N   + G V ++L  + +M +MG    L   N +++    + +
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGK 208

Query: 190 HEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYS 249
             +   ++  M E G  P+  +Y   LN            +LL K+E E +I +D + YS
Sbjct: 209 EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKYS 267

Query: 250 TVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDN 309
            + +   K G  D A     + E K    + + YN +I  + + G+  D     KL +D 
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG---AKLLRDM 324

Query: 310 CKKQLNREYIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLI 366
            K+++N   +T   ++   VK G L EAE+L  +    G   D      L+ G+ ++  +
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384

Query: 367 EKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           +KA  M+  MV KG  P   +++I+ +G+     ++   + F++
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 428



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/298 (18%), Positives = 136/298 (45%), Gaps = 11/298 (3%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
            L++ +V  G + ++    ++M   G ++P  + Y +++  + +    +K   ++ +M  
Sbjct: 338 VLIDSFVKEGKLREAEELHKEMIHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G  P+I ++ I +N Y   + +++  +L  K+   G +A D +TY+T+   + + G  +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVA-DTVTYNTLIQGFCELGKLN 455

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITM 321
            A    ++   +    + V Y  ++      G+ +  + ++ K++K   +  +    I +
Sbjct: 456 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
            G +     +++A  L     L G     K  NI++ G  +KG + +AE + R M + G 
Sbjct: 516 HG-MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 574

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
            P   +++I+   H+   +  K+ +  +E      +  G+   +  +  ++  ++D R
Sbjct: 575 APDGWTYNILIRAHLGDGDATKSVKLIEE-----LKRCGFSVDASTIKMVIDMLSDGR 627



 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 140/325 (43%), Gaps = 8/325 (2%)

Query: 157 DKSLSQMQKMKDMGFVSPLHYNNIM-SLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRIC 215
           D  L+  ++M+  G    L+  +IM + + R  +       +  + + G  P+  ++   
Sbjct: 105 DLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTL 164

Query: 216 LNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKA 275
           +N       +    +L++++   G    D +T +T+ N    +G + +A++ + K  +  
Sbjct: 165 INGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG 223

Query: 276 YKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAE 335
            + +AV Y  +++     G+    M L +  ++   K    +Y  ++  L K G L+ A 
Sbjct: 224 CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAF 283

Query: 336 KLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGH 395
            L  + E+ G T +    NIL+ G+   G  +    +LR M+ +   P   ++S++    
Sbjct: 284 NLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 343

Query: 396 VAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL-KKV 454
           V +  + +A +  KE +     ++G  P +   +S++        +++    V+ +  K 
Sbjct: 344 VKEGKLREAEELHKEMI-----HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 455 MSMNRDMYLSLIKLYVRCGREVDGV 479
              N   +  LI  Y +  R  DG+
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGL 423


>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19900303-19902567 FORWARD
           LENGTH=754
          Length = 754

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 1/236 (0%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           +N+++     T  H    ++   M+  G  PD F+Y + ++S  ++  L+    +L+++E
Sbjct: 403 FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
             G  A   +TY+T+ + + KA    +A     + E     R++V YN +I       + 
Sbjct: 463 LSG-CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRV 521

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
           +D  +L        +K     Y ++L    + GD+++A  ++     +G   D      L
Sbjct: 522 EDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581

Query: 357 LIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
           + G  + G +E A  +LRS+  KG   TP++++ +  G   K    +A   F+E L
Sbjct: 582 ISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREML 637



 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 1/228 (0%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN ++S   +  Q E+  ++  ++   G+ PD+ ++   +       +     +L E++ 
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
           ++G    D  TY+ + +     G  D+AL  LK+ E     R  + YN +I  +    K 
Sbjct: 428 SKG-CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
           ++   ++   + +   + +  Y T++  L K   +E+A +L+ Q  + G   D    N L
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546

Query: 357 LIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           L  + R G I+KA  ++++M   G  P   ++  + SG      +E A
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594


>AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:1303884-1305692 REVERSE
           LENGTH=602
          Length = 602

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 11/223 (4%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           Y+ +++   R  + E+  ++L +MKE G++PD +SY   + ++     L+   + LE + 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
           ++G +  D + Y+TV     K G  D+AL    K  +     ++ +YN M S   S G K
Sbjct: 396 SDGCLP-DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 454

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLL-----GQWELSGNTYDFK 351
              + +      N        Y +M+ CL + G ++EA +LL      ++  S  TY   
Sbjct: 455 IRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY--- 511

Query: 352 VPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASG 394
             NI+L+G+ +   IE A  +L SMV  G  P   +++++  G
Sbjct: 512 --NIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 12/295 (4%)

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           +L  M   G +PD+      +  +    ++    +++E +E  G    D   Y+ + N +
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ--PDVFAYNALINGF 168

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMR-LWKLQKDNCKKQL 314
            K    D A   L +   K +  D V YN MI    S GK    ++ L +L  DNC+  +
Sbjct: 169 CKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTV 228

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
              Y  ++   +  G ++EA KL+ +    G   D    N ++ G  ++G++++A  M+R
Sbjct: 229 -ITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSW 434
           ++  KG  P   S++I+    + +   E+      E L     ++   P     S +++ 
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEG-----EKLMTKMFSEKCDPNVVTYSILITT 342

Query: 435 VTDNRDIEEVEDFVNSLK-KVMSMNRDMYLSLIKLYVRCGREVDGV--LESMKAD 486
           +  +  IEE  + +  +K K ++ +   Y  LI  + R GR    +  LE+M +D
Sbjct: 343 LCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 153/345 (44%), Gaps = 17/345 (4%)

Query: 155 SVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRI 214
           ++ K++  M+ ++  G      YN +++ + +  + +    VL  M+    SPD  +Y I
Sbjct: 139 NIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNI 198

Query: 215 CLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDK 274
            + S  +R  L+   K+L ++ ++ +     +TY+ +    +  G  D+AL  + +   +
Sbjct: 199 MIGSLCSRGKLDLALKVLNQLLSD-NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR 257

Query: 275 AYKRDAVAYNHMISHYASLG---KKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDL 331
             K D   YN +I      G   +  +M+R   L+   C+  +   Y  +L  L+  G  
Sbjct: 258 GLKPDMFTYNTIIRGMCKEGMVDRAFEMVR--NLELKGCEPDV-ISYNILLRALLNQGKW 314

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           EE EKL+ +        +    +IL+    R G IE+A  +L+ M +KG TP   S+  +
Sbjct: 315 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374

Query: 392 ASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
            +    +  ++ A + F E +     + G  P     +++L+ +  N   ++  +    L
Sbjct: 375 IAAFCREGRLDVAIE-FLETMI----SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429

Query: 452 KKV-MSMNRDMYLSLIKLYVRCG---REVDGVLESMKADNIELDE 492
            +V  S N   Y ++       G   R +  +LE M ++ I+ DE
Sbjct: 430 GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE-MMSNGIDPDE 473


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 117/269 (43%), Gaps = 10/269 (3%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNN--IMSLYTRTEQHEKVPDVLAMMKED 203
           ++NC+        + S + K+  +G+       N  I  L+   +  E V  ++  M E+
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVV-LVDRMVEN 187

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G  PD+ +Y   +N      D      LL K+E E ++  D  TYST+ +   + G  D 
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKME-ERNVKADVFTYSTIIDSLCRDGCIDA 246

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT--- 320
           A+   K+ E K  K   V YN ++      GK  D   L    KD   +++    IT   
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLL---KDMVSREIVPNVITFNV 303

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           +L   VK G L+EA +L  +    G + +    N L+ GY  +  + +A  ML  MV   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFK 409
            +P   +++ +  G+   + ++   + F+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392



 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 120/270 (44%), Gaps = 8/270 (2%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
            LL+ +V  G + ++    ++M   G +SP  + YN +M  Y    +  +  ++L +M  
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRG-ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR 361

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
           +  SPDI ++   +  Y     +++  K+   I   G +A + +TYS +   + ++G   
Sbjct: 362 NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA-NAVTYSILVQGFCQSGKIK 420

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLN-REYIT 320
            A    ++        D + Y  ++      GK +  + +++ LQK   K  L    Y T
Sbjct: 421 LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS--KMDLGIVMYTT 478

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           ++  + K G +E+A  L       G   +     +++ G  +KG + +A  +LR M + G
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
             P   +++ +   H+   ++  + +  +E
Sbjct: 539 NAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568


>AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:14516226-14518186 FORWARD
           LENGTH=621
          Length = 621

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 147/330 (44%), Gaps = 40/330 (12%)

Query: 174 PLHYN---NIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDL---EN 227
           P HY+    I  L      HE    +   MK  G+ PD F+Y     +     ++    +
Sbjct: 94  PNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRS 153

Query: 228 MEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMI 287
           +   L K+  E D+ ++     ++   Y K G     + Y +K  D+  +RD V++N MI
Sbjct: 154 VHSSLFKVGLERDVHIN----HSLIMMYAKCG----QVGYARKLFDEITERDTVSWNSMI 205

Query: 288 SHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEA---EKLLGQWELS 344
           S Y+  G  KD M L++  ++   +   R  ++MLG    LGDL      E++    ++ 
Sbjct: 206 SGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIG 265

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
            +T+   + + L+  Y + G ++ A  +   M+ K +     +W+ + + +       +A
Sbjct: 266 LSTF---LGSKLISMYGKCGDLDSARRVFNQMIKKDRV----AWTAMITVYSQNGKSSEA 318

Query: 405 FQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIE---EVEDFVNSLKKVMSMNRDM 461
           F+ F E      E  G  P +  +S++LS       +E   ++E   + L    S+  ++
Sbjct: 319 FKLFFE-----MEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASEL----SLQHNI 369

Query: 462 YLS--LIKLYVRCGR--EVDGVLESMKADN 487
           Y++  L+ +Y +CGR  E   V E+M   N
Sbjct: 370 YVATGLVDMYGKCGRVEEALRVFEAMPVKN 399


>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
           chr2:13387201-13390550 REVERSE LENGTH=918
          Length = 918

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 141/300 (47%), Gaps = 13/300 (4%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN ++    +  Q +   ++LA M    + P++ SY   ++ +      +    L  ++ 
Sbjct: 377 YNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
             G IA+D ++Y+T+ + Y K G  ++AL  L++      K+D V YN ++  Y   GK 
Sbjct: 437 YLG-IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKY 495

Query: 297 KDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
            ++ +++ ++++++    L   Y T++    K G  +EA ++  +++ +G   D  + + 
Sbjct: 496 DEVKKVFTEMKREHVLPNL-LTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEK--------AFQC 407
           L+    + GL+  A +++  M  +G +P   +++ I         M++        +   
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPF 614

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIK 467
              AL+ L E +G R     +   L+  ++NR  ++ E+ +  L  ++ + R M+   IK
Sbjct: 615 SSSALSALTETEGNRVIQ--LFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIK 672



 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 142/334 (42%), Gaps = 47/334 (14%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARS-DLENMEKLLEKI 235
           ++ ++S Y R+  HE+   V   MKE G+ P++ +Y   +++ G    + + + K  +++
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330

Query: 236 ETEG----------------------------------DIAVDWMTYSTVANFYVKAGLK 261
           +  G                                   I  D  +Y+T+ +   K G  
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQM 390

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNR-EYIT 320
           D A   L +   K    + V+Y+ +I  +A  G+  + + L+  +       L+R  Y T
Sbjct: 391 DLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFG-EMRYLGIALDRVSYNT 449

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           +L    K+G  EEA  +L +    G   D    N LL GY ++G  ++ + +   M  + 
Sbjct: 450 LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREH 509

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVV--SSILSWVTDN 438
             P   ++S +  G+ +K  +      +KEA+ +  E K    ++DVV  S+++  +  N
Sbjct: 510 VLPNLLTYSTLIDGY-SKGGL------YKEAMEIFREFKSAGLRADVVLYSALIDALCKN 562

Query: 439 RDIEEVEDFVNSL-KKVMSMNRDMYLSLIKLYVR 471
             +      ++ + K+ +S N   Y S+I  + R
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596


>AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 |
           chr1:19312078-19314145 REVERSE LENGTH=650
          Length = 650

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 8/209 (3%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVS-PLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
           ++L     AG   +++  + K+ + G V+  + YN + S   + +Q   + D+   MK+D
Sbjct: 412 SMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKD 471

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G SPDIF+Y I + S+G   +++    + E++E   D   D ++Y+++ N   K G  D+
Sbjct: 472 GPSPDIFTYNILIASFGRVGEVDEAINIFEELE-RSDCKPDIISYNSLINCLGKNGDVDE 530

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT--- 320
           A +  K+ ++K    D V Y+ ++  +   GK + +   + L ++   K      +T   
Sbjct: 531 AHVRFKEMQEKGLNPDVVTYSTLMECF---GKTERVEMAYSLFEEMLVKGCQPNIVTYNI 587

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYD 349
           +L CL K G   EA  L  + +  G T D
Sbjct: 588 LLDCLEKNGRTAEAVDLYSKMKQQGLTPD 616



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 45/336 (13%)

Query: 154 GSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           G  D+++    +M   G  ++ + YN +M +  + +  +K   V + M E G  P+ ++Y
Sbjct: 284 GKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTY 343

Query: 213 RICLNSYGARSDLENMEKLLE---KIETEGDIAVDWMTYSTVAN-------------FYV 256
            + LN   A   L  ++ ++E   +  T+G  +    T S + +             F V
Sbjct: 344 SLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPV 403

Query: 257 K---------------AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMR 301
           K               AG   +A+  L K  +K    D + YN +   +++LGK K +  
Sbjct: 404 KGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTV---FSALGKLKQISH 460

Query: 302 LW----KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILL 357
           +     K++KD     +   Y  ++    ++G+++EA  +  + E S    D    N L+
Sbjct: 461 IHDLFEKMKKDGPSPDI-FTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLI 519

Query: 358 IGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAE 417
               + G +++A    + M +KG  P   ++S +       E +E A+  F+E L     
Sbjct: 520 NCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLV---- 575

Query: 418 NKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKK 453
            KG +P     + +L  +  N    E  D  + +K+
Sbjct: 576 -KGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQ 610



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 111/229 (48%), Gaps = 12/229 (5%)

Query: 174 PLHYNNIMSLYTRT---EQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
           P  YN I+ + +R+   ++ ++V  +L  M +  V  +I +  I +  +G   DL+   +
Sbjct: 133 PFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLR 192

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           L++K     D+ ++  TY  +   Y+++    KA     +     +K D  AYN ++   
Sbjct: 193 LVKK----WDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLD-- 246

Query: 291 ASLGKKKDMMRLWK-LQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYD 349
            +L K +   ++++ ++K +C++     Y  M+  + ++G  +EA  L  +    G T +
Sbjct: 247 -ALAKDEKACQVFEDMKKRHCRRD-EYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLN 304

Query: 350 FKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAK 398
               N L+   ++  +++KA  +   MV+ G  P   ++S++ +  VA+
Sbjct: 305 VVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAE 353


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 121/276 (43%), Gaps = 20/276 (7%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMG-------FVSPLHYNNIMSLYTRTEQHEKVPDVL 197
           +LLN Y     +  +++ + +M +MG       F + +H      L+   +  E V  V 
Sbjct: 160 SLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH-----GLFLHNKASEAVALVD 214

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
            M++  G  P++ +Y + +N    R D +    LL K+E    I  D + ++T+ +   K
Sbjct: 215 RMVQR-GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTIIDSLCK 272

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
               D AL   K+ E K  + + V Y+ +IS   S G+  D  +L     D  +K++N  
Sbjct: 273 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL---SDMIEKKINPN 329

Query: 318 YIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
            +T   ++   VK G   EAEKL           D    N L+ G+     ++KA+ M  
Sbjct: 330 LVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE 389

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            MV K   P   +++ +  G    + +E   + F+E
Sbjct: 390 FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425



 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 170/418 (40%), Gaps = 36/418 (8%)

Query: 82  RTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRG--LESAESYFQNLSDSDKT 139
           R  +R  Q   V+  +   GLC    GD  + L L+ ++    +E+    F  + DS   
Sbjct: 215 RMVQRGCQPNLVTYGVVVNGLCK--RGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272

Query: 140 EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVL 197
            +              VD +L+  ++M+  G + P  + Y++++S      +      +L
Sbjct: 273 YR-------------HVDDALNLFKEMETKG-IRPNVVTYSSLISCLCSYGRWSDASQLL 318

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
           + M E  ++P++ ++   ++++         EKL + +  +  I  D  TY+++ N +  
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM-IKRSIDPDIFTYNSLVNGFCM 377

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
               DKA    +    K    D V YN +I  +    + +D   L++             
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 437

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y T++  L   GD + A+K+  Q    G   D    +ILL G    G +EKA  +   M 
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 497

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTD 437
                     ++ +  G      ++  +  F  +L++    KG +P     ++++S +  
Sbjct: 498 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC-SLSL----KGVKPNVVTYNTMISGLCS 552

Query: 438 NRDIEEVEDFVNSLKKVMSM-NRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEM 494
            R ++E    +  +K+   + N   Y +LI+ ++R G          KA + EL  EM
Sbjct: 553 KRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD---------KAASAELIREM 601


>AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:7056254-7057954 FORWARD
           LENGTH=566
          Length = 566

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 149/335 (44%), Gaps = 43/335 (12%)

Query: 134 SDSDKTE-KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNN------------- 179
           S++ KT+ +++  ++N YV + S++ S+S   +M D GFV   +  N             
Sbjct: 87  SETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFN 146

Query: 180 -------------IMSLYT---------RTEQHEKVPDVLAMMKEDGVSPDIFSYRICLN 217
                        ++ +Y+            + EK  D+L  + E G SP++  Y   ++
Sbjct: 147 QWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLID 206

Query: 218 SYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYK 277
               + ++E  + L  ++   G +A +  TY+ + N   K G+K +     +K ++    
Sbjct: 207 GCCKKGEIEKAKDLFFEMGKLGLVA-NERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVF 265

Query: 278 RDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
            +   YN +++     G+ KD  +++   ++         Y T++G L +   L EA K+
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKV 325

Query: 338 LGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
           + Q +  G   +    N L+ G+   G + KA ++ R +  +G +P+  +++I+ SG   
Sbjct: 326 VDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCR 385

Query: 398 KENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
           K +   A +  KE      E +G +P S V  +IL
Sbjct: 386 KGDTSGAAKMVKE-----MEERGIKP-SKVTYTIL 414



 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 123/272 (45%), Gaps = 2/272 (0%)

Query: 140 EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLA 198
           E+ +  L+N     G   +     +KM++ G    L+ YN +M+   +  + +    V  
Sbjct: 233 ERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFD 292

Query: 199 MMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKA 258
            M+E GVS +I +Y   +        L    K++++++++G I  + +TY+T+ + +   
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTLIDGFCGV 351

Query: 259 GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREY 318
           G   KAL   +  + +      V YN ++S +   G      ++ K  ++   K     Y
Sbjct: 352 GKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTY 411

Query: 319 ITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
             ++    +  ++E+A +L    E  G   D    ++L+ G+  KG + +A  + +SMV+
Sbjct: 412 TILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVE 471

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           K   P    ++ +  G+  + +  +A +  KE
Sbjct: 472 KNCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503


>AT3G11350.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:3558495-3560078 FORWARD
           LENGTH=359
          Length = 359

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 19/164 (11%)

Query: 86  RFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGA 145
           R  QAL+VS+WM    +C ++P D + + +LI  V GLE AE YF+++ ++ + E ++ A
Sbjct: 55  RLHQALEVSDWMIEHKICCLVPEDFSARFQLIENVLGLEEAEKYFESIPENLRGESLYTA 114

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYN---NIMSLYTRTEQHEKVPDVLAMMKE 202
           LL  Y          ++  + K +   S +H      I S  TR    +KV + L  MKE
Sbjct: 115 LLRSY----------AKRSEKKYLDRASRIHIQEDERISSFGTR----DKVDESLREMKE 160

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWM 246
             +  D  +    L  Y A SD+  ME+ L   + EG + +D M
Sbjct: 161 SNIDLDRLTVNKALRVYAAASDVAAMERFL--ADWEGTVKLDLM 202


>AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:5461031-5462545 FORWARD
           LENGTH=504
          Length = 504

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 179/436 (41%), Gaps = 33/436 (7%)

Query: 73  ELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQN 132
           +  R++  +   K++   + + E M   G+ P       + L    R   L  A S+   
Sbjct: 83  DFSRLLSAISKMKKYDVVIYLWEQMQMLGI-PHNLCTCNILLNCFCRCSQLSLALSFLGK 141

Query: 133 LSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQ 189
           +        +   G+LLN +     V  +L    +M  MG+  + + YN I+    +++Q
Sbjct: 142 MIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQ 201

Query: 190 HEKVPDVLAMMKEDGVSPDIFSYRIC---LNSYGARSDLENMEKLLEKIETEGDIAVDWM 246
            +   D+L  M++DG+ PD+ +Y      L S G  SD   M   + K E   D+     
Sbjct: 202 VDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDV----F 257

Query: 247 TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMI---SHYASLGKKKDMMRLW 303
           T++ + +  VK G   +A  + ++   ++   D V Y+ +I     Y+ L + ++M    
Sbjct: 258 TFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGF- 316

Query: 304 KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRK 363
            +    C   +   Y  ++    K   +E   KL  +    G   +     IL+ GY R 
Sbjct: 317 -MVSKGCFPDV-VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRA 374

Query: 364 GLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRP 423
           G +  AE + R MV  G  P   +++++  G      +EK       AL +LA+ +    
Sbjct: 375 GKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEK-------ALVILADMQKNGM 427

Query: 424 KSDVVSS--ILSWVTDNRDIEEVEDFVNSLKKVMSM-----NRDMYLSLIKLYVRCGREV 476
            +D+V+   I+  +    ++ +  D   SL     M        M L L K  +R  RE 
Sbjct: 428 DADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLR--REA 485

Query: 477 DGVLESMKADNIELDE 492
           D +   MK D I  +E
Sbjct: 486 DALFRKMKEDGILPNE 501


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 127/279 (45%), Gaps = 26/279 (9%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIM--SLYTRTEQHEKVPDVLAM--- 199
           +LLN Y  +    K +S+   + D  FV+    N +   +L      H K  + +A+   
Sbjct: 156 SLLNGYCHS----KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR 211

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M   G  PD+ +Y + +N    R D +    LL K+E +G +    + Y+T+ +   K  
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME-QGKLEPGVLIYNTIIDGLCKYK 270

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
             D AL   K+ E K  + + V Y+ +IS   + G+  D  RL     D  ++++N +  
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLL---SDMIERKINPDVF 327

Query: 320 T---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI-----LLIGYSRKGLIEKAET 371
           T   ++   VK G L EAEKL    E+   + D   P+I     L+ G+     +++A+ 
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYD--EMVKRSID---PSIVTYSSLINGFCMHDRLDEAKQ 382

Query: 372 MLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           M   MV K   P   +++ +  G    + +E+  + F+E
Sbjct: 383 MFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421



 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/304 (17%), Positives = 120/304 (39%), Gaps = 42/304 (13%)

Query: 137 DKTEKVHGALLNCYVMAGSVDKSLSQMQKM-KDMGFVSPLHYNNIMSLYTRTEQHEKVPD 195
           D +   + +L+N + M   +D++    + M     F   + YN ++  + + ++ E+  +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           V   M + G+  +  +Y I +       D +  +++ +++ ++G +  + MTY+T+ +  
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGL 476

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN 315
            K G  +KA++  +  +    +     YN MI                            
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG-------------------------- 510

Query: 316 REYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
                    + K G +E+   L     L G   D    N ++ G+ RKG  E+A+ + + 
Sbjct: 511 ---------MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 561

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWV 435
           M + G  P    ++ +    +   + E + +  KE  +      G+   +  +  + + +
Sbjct: 562 MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC-----GFAGDASTIGLVTNML 616

Query: 436 TDNR 439
            D R
Sbjct: 617 HDGR 620


>AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2766367-2768430 REVERSE
           LENGTH=687
          Length = 687

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 125/264 (47%), Gaps = 4/264 (1%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  LLN +V A    K  S     +  G    L  YN ++ +  + ++ EK    L  M 
Sbjct: 117 YNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMW 176

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           ++G  PD+FSY   +N       L++  +L +++   G +A D   Y+ + + ++K    
Sbjct: 177 KEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERG-VAPDVTCYNILIDGFLKEKDH 235

Query: 262 DKAL-IYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
             A+ ++ +  ED +   +   +N MIS  +  G+  D +++W+  K N +++    Y +
Sbjct: 236 KTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSS 295

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           ++  L   G++++AE +  + +    + D    N +L G+ R G I+++  + R M  K 
Sbjct: 296 LIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN 355

Query: 381 KTPTPNSWSIIASGHVAKENMEKA 404
                 S++I+  G +    +++A
Sbjct: 356 SVNIV-SYNILIKGLLENGKIDEA 378



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 156/396 (39%), Gaps = 31/396 (7%)

Query: 61  NWL-QEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCP-------ILPG---- 108
           +W+ +EG          ++  L    +   AL++ + MS +G+ P       ++ G    
Sbjct: 173 DWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKE 232

Query: 109 -DRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMK 167
            D    +EL  R+  LE +  Y           K H  +++     G VD  L   ++MK
Sbjct: 233 KDHKTAMELWDRL--LEDSSVY--------PNVKTHNIMISGLSKCGRVDDCLKIWERMK 282

Query: 168 DMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLE 226
                  L+ Y++++         +K   V   + E   S D+ +Y   L  +     ++
Sbjct: 283 QNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIK 342

Query: 227 NMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHM 286
              +L   +E +   +V+ ++Y+ +    ++ G  D+A +  +    K Y  D   Y   
Sbjct: 343 ESLELWRIMEHKN--SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIF 400

Query: 287 ISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGN 346
           I      G     + + +  + +        Y +++ CL K   LEEA  L+ +    G 
Sbjct: 401 IHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGV 460

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
             +  V N L+ G  R   + +A   LR M   G  PT  S++I+  G        +A  
Sbjct: 461 ELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASA 520

Query: 407 CFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIE 442
             KE L    EN GW+P     S +L  +  +R I+
Sbjct: 521 FVKEML----EN-GWKPDLKTYSILLCGLCRDRKID 551


>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
           chr2:16381647-16384250 FORWARD LENGTH=867
          Length = 867

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 138/313 (44%), Gaps = 10/313 (3%)

Query: 105 ILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLN----CYVMAGSVDKSL 160
           I P    V   + G ++  ES E+  +  +DS ++   HG + N     +   G VD + 
Sbjct: 411 IAPSSVLVHTMIQGCLKA-ESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAAT 469

Query: 161 SQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNS 218
           S ++ M+  G + P  + YNN+M  + R +  +    + + M E G+ P+ F+Y I ++ 
Sbjct: 470 SFLKMMEQKG-IEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDG 528

Query: 219 YGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKK-CEDKAYK 277
           +    D +N   ++ ++    +   + + Y+T+ N   K G   KA   L+   ++K Y 
Sbjct: 529 FFKNKDEQNAWDVINQMNA-SNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYS 587

Query: 278 RDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
               +YN +I  +  +G     +  ++   +N K      + +++    K   ++ A ++
Sbjct: 588 MSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEM 647

Query: 338 LGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
             + +      D      L+ G+ +K  ++ A T+   + + G  P  + ++ + SG   
Sbjct: 648 THEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRN 707

Query: 398 KENMEKAFQCFKE 410
              M+ A   +K+
Sbjct: 708 LGKMDAAIDLYKK 720



 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 129/284 (45%), Gaps = 5/284 (1%)

Query: 132 NLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKM-KDMGF-VSPLHYNNIMSLYTRTEQ 189
           N S+ +  E ++  ++N     G   K+   +Q + K+  + +S   YN+I+  + +   
Sbjct: 546 NASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGD 605

Query: 190 HEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYS 249
            +   +    M E+G SP++ ++   +N +   + ++   ++  ++++  ++ +D   Y 
Sbjct: 606 TDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSM-ELKLDLPAYG 664

Query: 250 TVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKD 308
            + + + K      A     +  +     +   YN +IS + +LGK    + L+K +  D
Sbjct: 665 ALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVND 724

Query: 309 NCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEK 368
                L   Y TM+  L+K G++  A  L  +    G   D  +  +L+ G S+KG   K
Sbjct: 725 GISCDL-FTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLK 783

Query: 369 AETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
           A  ML  M  K  TP    +S + +GH  + N+ +AF+   E L
Sbjct: 784 ASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEML 827


>AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23301576-23303162 FORWARD LENGTH=528
          Length = 528

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 129/281 (45%), Gaps = 30/281 (10%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMG-------FVSPLHYNNIMSLYTRTEQHEKVPDVL 197
           +LLN +     +  +++ + +M +MG       F + +H      L+   +  E V  ++
Sbjct: 153 SLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIH-----GLFLHNKASEAVA-LI 206

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
             M + G  PD+ +Y   +N    R D +    LL K+E    I  + + YSTV +   K
Sbjct: 207 DRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEA-AKIEANVVIYSTVIDSLCK 265

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
              +D AL    + E+K  + + + Y+ +IS   + G+  D  RL     D  ++++N  
Sbjct: 266 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLL---SDMIERKINPN 322

Query: 318 YIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI-----LLIGYSRKGLIEKA 369
            +T   ++   VK G L +AEKL    E+   + D   PNI     L+ G+     + +A
Sbjct: 323 LVTFSALIDAFVKKGKLVKAEKL--YEEMIKRSID---PNIFTYSSLINGFCMLDRLGEA 377

Query: 370 ETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           + ML  M+ K   P   +++ + +G    + ++K  + F+E
Sbjct: 378 KQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFRE 418


>AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:6129255-6130775 REVERSE
           LENGTH=506
          Length = 506

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 174 PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
           P+ +N +++ + R  + E+   +L  MK++G +P++++Y   +N +     ++  ++  +
Sbjct: 268 PVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFD 327

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
           +++  G + +D + Y+T+ N + + G  D+A+  L + +    + D + YN ++   +S 
Sbjct: 328 EVKKTG-LKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSE 386

Query: 294 GKKKDMMRLWKLQKDNCKKQLNR-EYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
           G+ ++ +++   Q  +    LN+  Y  +L  L   G+LE+A K L      G       
Sbjct: 387 GRSEEALQMLD-QWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHAT 445

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
            N L++     G  E    +L   +  G  P P SW  +      +  +   F+
Sbjct: 446 WNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFE 499



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 6/240 (2%)

Query: 154 GSVDKSLSQMQKMKDMGFVSP--LHYNNIM-SLYTRTEQHEKVPDVLAMMKEDGVSPDIF 210
           G ++ +   +++MK  G   P  + Y+ +M  L+  +   E V     M+ ++G+SPD  
Sbjct: 210 GDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPV 269

Query: 211 SYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKK 270
           ++ + +N +    ++E  +K+L+ ++  G    +   YS + N + K G   +A     +
Sbjct: 270 TFNVMINGFCRAGEVERAKKILDFMKKNG-CNPNVYNYSALMNGFCKVGKIQEAKQTFDE 328

Query: 271 CEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLG 329
            +    K D V Y  +++ +   G+  + M+L  +++   C+      Y  +L  L   G
Sbjct: 329 VKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRAD-TLTYNVILRGLSSEG 387

Query: 330 DLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWS 389
             EEA ++L QW   G   +     I+L      G +EKA   L  M ++G  P   +W+
Sbjct: 388 RSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWN 447



 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 15/232 (6%)

Query: 196 VLAMMKEDGVS-PDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANF 254
           V+  MK  G+S P+  +Y   ++   A S  +   +L E + ++  I+ D +T++ + N 
Sbjct: 218 VVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMING 277

Query: 255 YVKAGLKDKA---LIYLKK--CEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDN 309
           + +AG  ++A   L ++KK  C    Y      Y+ +++ +  +GK ++  + +   K  
Sbjct: 278 FCRAGEVERAKKILDFMKKNGCNPNVYN-----YSALMNGFCKVGKIQEAKQTFDEVKKT 332

Query: 310 CKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKA 369
             K     Y T++ C  + G+ +EA KLLG+ + S    D    N++L G S +G  E+A
Sbjct: 333 GLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEA 392

Query: 370 ETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGW 421
             ML     +G      S+ II +       +EKA +     L+V++E   W
Sbjct: 393 LQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVK----FLSVMSERGIW 440


>AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8177215-8179743 REVERSE
           LENGTH=842
          Length = 842

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 154/356 (43%), Gaps = 18/356 (5%)

Query: 124 ESAESYFQNLSDSD-KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMS 182
           E++E++ + L +    T      +++ Y   G + +  S M+ MK         YN ++S
Sbjct: 316 EASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLHCAPDTRTYNILIS 375

Query: 183 LYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIA 242
           L+T+    E+       MK+DG+ PD  SYR  L ++  R  +E  E L+ +++ + ++ 
Sbjct: 376 LHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDD-NVE 434

Query: 243 VDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL 302
           +D  T S +   YV+A + +K+  + K+    A    +  Y+  I  Y   G   +  R+
Sbjct: 435 IDEYTQSALTRMYVEAEMLEKSWSWFKRFH-VAGNMSSEGYSANIDAYGERGYLSEAERV 493

Query: 303 WKLQKDNCKKQLNR----EYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLI 358
           +      C +++N+    EY  M+         E+A +L       G T D    N L+ 
Sbjct: 494 FI-----CCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQ 548

Query: 359 GYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAEN 418
             +   +  K    L  M + G       +  + S  V    +  A + +KE +    E 
Sbjct: 549 ILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIE- 607

Query: 419 KGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLIKLYVRCG 473
               P   V   +++   D  ++++   +V ++K+  +  N  +Y SLIKLY + G
Sbjct: 608 ----PDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVG 659



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 131/336 (38%), Gaps = 42/336 (12%)

Query: 81  LRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS---- 136
           L+ +  + +A+++ EW  SKG   +      +   ++ R+ G      Y Q+L D     
Sbjct: 161 LKEQIHWERAVEIFEWFKSKGCYEL----NVIHYNIMLRILGKACKWRYVQSLWDEMIRK 216

Query: 137 --DKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKV 193
                   +G L++ Y   G    +L  + KM  +G     +    ++ +Y +  + +K 
Sbjct: 217 GIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKA 276

Query: 194 PDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVAN 253
            +       D    D     +CL+SY                           TY+T+ +
Sbjct: 277 EEFFKKWSCDENKAD---SHVCLSSY---------------------------TYNTMID 306

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQ 313
            Y K+G   +A    K+  ++      V +N MI  Y + G+  ++  L K  K +C   
Sbjct: 307 TYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLHCAPD 366

Query: 314 LNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETML 373
             R Y  ++    K  D+E A     + +  G   D      LL  +S + ++E+AE ++
Sbjct: 367 -TRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLI 425

Query: 374 RSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
             M D        + S +   +V  E +EK++  FK
Sbjct: 426 AEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFK 461



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 139/336 (41%), Gaps = 23/336 (6%)

Query: 85  KRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKV-H 143
           KRF     V+  MSS+G         +  ++  G    L  AE  F    + +K   + +
Sbjct: 461 KRF----HVAGNMSSEGY--------SANIDAYGERGYLSEAERVFICCQEVNKRTVIEY 508

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMK 201
             ++  Y ++ S +K+    + M   G V+P    YN ++ +    +   K    L  M+
Sbjct: 509 NVMIKAYGISKSCEKACELFESMMSYG-VTPDKCTYNTLVQILASADMPHKGRCYLEKMR 567

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           E G   D   Y   ++S+     L NM + + K   E +I  D + Y  + N +   G  
Sbjct: 568 ETGYVSDCIPYCAVISSFVKLGQL-NMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNV 626

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
            +A+ Y++  ++     ++V YN +I  Y  +G   +   +++    +C K    +  T 
Sbjct: 627 QQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTS 686

Query: 322 LGCLVKLGD----LEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
             C++ L      + +AE +    +  G   +F    ++L  Y + G  E+A  + + M 
Sbjct: 687 -NCMINLYSERSMVRKAEAIFDSMKQRGEANEFTFA-MMLCMYKKNGRFEEATQIAKQMR 744

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
           +      P S++ +          ++A + FKE ++
Sbjct: 745 EMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVS 780


>AT3G53170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:19704600-19706417 REVERSE
           LENGTH=499
          Length = 499

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 148/339 (43%), Gaps = 7/339 (2%)

Query: 64  QEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGL 123
           Q  +  R +   ++ K L   K+  QA  + E M S+GL P +    ++ + + G+   L
Sbjct: 137 QHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSL-ISVYGKSELL 195

Query: 124 ESAES---YFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNN 179
           + A S   Y +++SD          L++C    G  D   S + +M  +G   S + YN 
Sbjct: 196 DKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNT 255

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVS-PDIFSYRICLNSYGARSDLENMEKLLEKIETE 238
           I+  Y +    E++  VLA M EDG S PD+ +    + SYG   ++  ME    + +  
Sbjct: 256 IIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLM 315

Query: 239 GDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKD 298
           G +  D  T++ +   + KAG+  K    +   E + +    V YN +I  +   G+ + 
Sbjct: 316 G-VQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 374

Query: 299 MMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLI 358
           M  +++  K    K  +  Y +++    K G + + + +L Q   S    D    N ++ 
Sbjct: 375 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIIN 434

Query: 359 GYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
            Y + G +   + +   M ++   P   +++ +   + A
Sbjct: 435 AYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTA 473



 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 118 GR-VRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPL 175
           GR +R +ES  S FQ +         +  +L+ +  AG   K  S M  M+   F ++ +
Sbjct: 299 GRNMRKMESWYSRFQLMGVQPDITTFNILILS-FGKAGMYKKMCSVMDFMEKRFFSLTTV 357

Query: 176 HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKI 235
            YN ++  + +  + EK+ DV   MK  GV P+  +Y   +N+Y     +  ++ +L +I
Sbjct: 358 TYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQI 417

Query: 236 ETEGDIAVDWMTYSTVANFYVKAG-LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG 294
               D+ +D   ++ + N Y +AG L     +Y++  E++  K D + +  MI  Y + G
Sbjct: 418 -VNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM-EERKCKPDKITFATMIKTYTAHG 475


>AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24123983-24126706 REVERSE
           LENGTH=907
          Length = 907

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 18/321 (5%)

Query: 180 IMSLYTRTEQHEKVPDVLAMMK---EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           + SL     +  K+ + L ++K   + GVSP++F Y   ++S          E L +++ 
Sbjct: 335 VSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMG 394

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
             G +  + +TYS + + + + G  D AL +L +  D   K     YN +I+ +   G  
Sbjct: 395 KIG-LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFG-- 451

Query: 297 KDMMRLWKLQKDNCKKQLNRE---YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
            D+        +   K+L      Y +++G     G + +A +L  +    G        
Sbjct: 452 -DISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTF 510

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
             LL G  R GLI  A  +   M +    P   +++++  G+  + +M KAF+  KE   
Sbjct: 511 TTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKE--- 567

Query: 414 VLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLIKLYVRC 472
                KG  P +     ++  +       E + FV+ L K    +N   Y  L+  + R 
Sbjct: 568 --MTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCRE 625

Query: 473 GR--EVDGVLESMKADNIELD 491
           G+  E   V + M    ++LD
Sbjct: 626 GKLEEALSVCQEMVQRGVDLD 646



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 18/251 (7%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN ++  Y       K  + L  M E G+ PD +SYR  ++           +  ++ + 
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 604

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
            +G+  ++ + Y+ + + + + G  ++AL   ++   +    D V Y  +I        +
Sbjct: 605 -KGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDR 663

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPN-- 354
           K    L K   D   K  +  Y +M+    K GD +EA    G W+L  N  +  VPN  
Sbjct: 664 KLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA---FGIWDLMIN--EGCVPNEV 718

Query: 355 ---ILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWS----IIASGHVAKENMEKAFQC 407
               ++ G  + G + +AE +   M      P   ++     I+  G V   +M+KA + 
Sbjct: 719 TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEV---DMQKAVEL 775

Query: 408 FKEALAVLAEN 418
               L  L  N
Sbjct: 776 HNAILKGLLAN 786


>AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2014440-2015942 REVERSE
           LENGTH=500
          Length = 500

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 11/292 (3%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAM 199
           ++  +++     G V+ +L  ++ MK MG + P  + YN++++    +        +L+ 
Sbjct: 186 IYNTIIDSLCEKGQVNTALDVLKHMKKMG-IRPDVVTYNSLITRLFHSGTWGVSARILSD 244

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M   G+SPD+ ++   ++ YG    L   +K   ++  +  +  + +TY+++ N     G
Sbjct: 245 MMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEM-IQRSVNPNIVTYNSLINGLCIHG 303

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
           L D+A   L     K +  +AV YN +I+ Y    +  D M++  +   +        Y 
Sbjct: 304 LLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYN 363

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           T+     + G    AEK+LG+    G   D    NILL G    G I KA   L  +   
Sbjct: 364 TLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKS 423

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSI 431
                  +++II  G    + +E A+  F  +LA+    KG  P  DV++ I
Sbjct: 424 KTVVGIITYNIIIKGLCKADKVEDAWYLFC-SLAL----KGVSP--DVITYI 468


>AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532541 FORWARD
           LENGTH=886
          Length = 886

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 129/286 (45%), Gaps = 8/286 (2%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYR 213
           G+++K L +M  ++D    + + YN ++  Y R     +  +V   M+E G  PD  +Y 
Sbjct: 381 GAINKLLDEM--VRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYC 438

Query: 214 ICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED 273
             ++ +     L+    + ++++  G ++ D  TYS + N   KAG    A     +  D
Sbjct: 439 TLIDIHAKAGFLDIAMDMYQRMQA-GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVD 497

Query: 274 KAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
           +    + V YN M+  +A     ++ ++L++  ++   +     Y  ++  L   G LEE
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 557

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           AE +  + +      D  V  +L+  + + G +EKA    ++M+  G  P   + + + S
Sbjct: 558 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 617

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
             +    + +A++  +  LA+     G RP     + +LS  TD R
Sbjct: 618 TFLRVNKIAEAYELLQNMLAL-----GLRPSLQTYTLLLSCCTDGR 658



 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 9/284 (3%)

Query: 170 GFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENM 228
           GF    H Y  ++    R +Q   +  +L  M  DG  P+  +Y   ++SYG  + L   
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 229 EKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
             +  +++ E     D +TY T+ + + KAG  D A+   ++ +      D   Y+ +I+
Sbjct: 419 MNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 289 HYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
                G      +L+ ++    C   L   Y  M+    K  + + A KL    + +G  
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNL-VTYNIMMDLHAKARNYQNALKLYRDMQNAGFE 536

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D    +I++      G +E+AE +   M  K   P    + ++        N+EKA+Q 
Sbjct: 537 PDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQW 596

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
           ++  L     + G RP     +S+LS       I E  + + ++
Sbjct: 597 YQAML-----HAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 279 DAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
           + V YN +I  Y       + M ++ ++Q+  CK      Y T++    K G L+ A  +
Sbjct: 398 NTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD-RVTYCTLIDIHAKAGFLDIAMDM 456

Query: 338 LGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
             + +  G + D    ++++    + G +  A  +   MVD+G TP   +++I+   H  
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516

Query: 398 KENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVED-FVNSLKKVMS 456
             N + A + +++      +N G+ P     S ++  +     +EE E  F    +K   
Sbjct: 517 ARNYQNALKLYRD-----MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWI 571

Query: 457 MNRDMYLSLIKLYVRCG 473
            +  +Y  L+ L+ + G
Sbjct: 572 PDEPVYGLLVDLWGKAG 588


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 10/255 (3%)

Query: 173 SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLL 232
           S + +N +++   R     +  D+L  M + G  P+  SY   L+ +     ++   + L
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402

Query: 233 EKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS 292
           E++ + G    D +TY+T+     K G  + A+  L +   K      + YN +I   A 
Sbjct: 403 ERMVSRG-CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461

Query: 293 LGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
            GK    ++L    +    K     Y +++G L + G ++EA K   ++E  G   +   
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
            N +++G  +    ++A   L  M+++G  P   S++I+  G +A E M       KEAL
Sbjct: 522 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG-LAYEGMA------KEAL 574

Query: 413 AVLAE--NKGWRPKS 425
            +L E  NKG   KS
Sbjct: 575 ELLNELCNKGLMKKS 589



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 118/287 (41%), Gaps = 15/287 (5%)

Query: 116 LIGRVRGLESAESYFQNLSDSDKTEKVHGAL----------LNCYVMAGSVDKSLSQMQK 165
           L GR +  E+  S + N + +     V+ +           L   V  G +++    ++ 
Sbjct: 68  LNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLEN 127

Query: 166 MKDMGFVSPL-HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSD 224
           M   G V  +     ++  + R  +  K   +L +++  G  PD+ +Y + ++ Y    +
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGE 187

Query: 225 LENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYN 284
           + N   +L+++     ++ D +TY+T+      +G   +A+  L +   +    D + Y 
Sbjct: 188 INNALSVLDRMS----VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYT 243

Query: 285 HMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELS 344
            +I            M+L    +D         Y  ++  + K G L+EA K L     S
Sbjct: 244 ILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS 303

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           G   +    NI+L      G    AE +L  M+ KG +P+  +++I+
Sbjct: 304 GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350


>AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23507320-23509053 FORWARD
           LENGTH=577
          Length = 577

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 20/276 (7%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMG-------FVSPLHYNNIMSLYTRTEQHEKVPDVL 197
           +LLN Y     +  +++ + +M +MG       F + +H      L+   +  E V  V 
Sbjct: 160 SLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH-----GLFLHNKASEAVALVD 214

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
            M++  G  P++ +Y + +N    R D++    LL K+E    I  + + YSTV +   K
Sbjct: 215 RMVQR-GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEANVVIYSTVIDSLCK 272

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
              +D AL    + E+K  + + + Y+ +IS   +  +  D  RL     D  ++++N  
Sbjct: 273 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLL---SDMIERKINPN 329

Query: 318 YIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
            +T   ++   VK G L EAEKL  +        D    + L+ G+     +++A+ M  
Sbjct: 330 VVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            M+ K   P   +++ + +G    + +++  + F+E
Sbjct: 390 LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFRE 425



 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           Y+++++ +   ++ ++   +  +M      P++ +Y   +N +     ++   +L  ++ 
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK- 295
             G +  + +TY+T+ + + +A   D A +  K+        + + YN ++      GK 
Sbjct: 428 QRGLVG-NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486

Query: 296 KKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
           +K M+    LQ+   +  +   Y  M+  + K G +E+   L     L G   D  + N 
Sbjct: 487 EKAMVVFEYLQRSKMEPTI-YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNT 545

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWS 389
           ++ G+ RKGL E+A+ + R M + G  P P+S +
Sbjct: 546 MISGFCRKGLKEEADALFRKMREDG--PLPDSGT 577



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 123/279 (44%), Gaps = 9/279 (3%)

Query: 157 DKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRI 214
           D +L+   +M++ G V P  + Y++++S     E+      +L+ M E  ++P++ ++  
Sbjct: 277 DDALNLFTEMENKG-VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNA 335

Query: 215 CLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDK 274
            ++++     L   EKL +++  +  I  D  TYS++ N +      D+A    +    K
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 394

Query: 275 AYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEA 334
               + V YN +I+ +    +  + + L++             Y T++    +  D + A
Sbjct: 395 DCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 454

Query: 335 EKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASG 394
           + +  Q    G   +    N LL G  + G +EKA  +   +      PT  +++I+  G
Sbjct: 455 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 514

Query: 395 HVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILS 433
                 +E  +  F  +L++    KG +P   + ++++S
Sbjct: 515 MCKAGKVEDGWDLFC-SLSL----KGVKPDVIIYNTMIS 548


>AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14807589-14810164 REVERSE
           LENGTH=591
          Length = 591

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 127/288 (44%), Gaps = 18/288 (6%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSY---GARSDLENMEKLLE 233
           Y  +++ + R    EK  ++   ++EDG+ PD++ Y   + SY   G       +  L++
Sbjct: 302 YTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQ 361

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
            +  E D A    +Y+ + + Y +AGL   A    ++ +         ++  ++S Y+  
Sbjct: 362 HMGCEPDRA----SYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYS-- 415

Query: 294 GKKKDMMRLWKLQKDNCKKQLNREYI---TMLGCLVKLGDLEEAEKLLGQWELSGNTYDF 350
            K +D+ +   + K+  +  +  +     +ML    +LG   + EK+L + E    T D 
Sbjct: 416 -KARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADI 474

Query: 351 KVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
              NIL+  Y + G +E+ E +   + +K   P   +W+     +  K+   K  + F+E
Sbjct: 475 STYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEE 534

Query: 411 ALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMN 458
            +     + G  P       +LS  +    +E+V   + ++ K ++++
Sbjct: 535 MI-----DSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVS 577



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 15/331 (4%)

Query: 63  LQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQL--ELIGRV 120
           L   HA  D +L  +   LR  K++   + V EW+  K      P      L  +  G+ 
Sbjct: 112 LPSTHASWD-DLINVSVQLRLNKKWDSIILVCEWILRKS--SFQPDVICFNLLIDAYGQK 168

Query: 121 RGLESAESYFQNLSDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP---- 174
              + AES +  L +S    TE  +  L+  Y MAG ++++   + +M++   VSP    
Sbjct: 169 FQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNH-HVSPKTIG 227

Query: 175 --LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLL 232
             ++   I  L  R    E+  DV   MK D   P   +Y + +N YG  S      KL 
Sbjct: 228 VTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLY 287

Query: 233 EKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS 292
            ++ +      +  TY+ + N + + GL +KA    ++ ++   + D   YN ++  Y+ 
Sbjct: 288 CEMRSH-QCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSR 346

Query: 293 LGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
            G       ++ L +    +     Y  M+    + G   +AE +  + +  G     K 
Sbjct: 347 AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKS 406

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
             +LL  YS+   + K E +++ M + G  P
Sbjct: 407 HMLLLSAYSKARDVTKCEAIVKEMSENGVEP 437


>AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14807589-14810072 REVERSE
           LENGTH=613
          Length = 613

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 130/317 (41%), Gaps = 42/317 (13%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           + AL+N +   G  +K+    +++++ G    ++ YN +M  Y+R        ++ ++M+
Sbjct: 324 YTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQ 383

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G  PD  SY I +++YG      + E + E+++  G IA    ++  + + Y KA   
Sbjct: 384 HMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLG-IAPTMKSHMLLLSAYSKARDV 442

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
            K    +K+  +   + D    N M++ Y  LG+   M                      
Sbjct: 443 TKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKM---------------------- 480

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
                        EK+L + E    T D    NIL+  Y + G +E+ E +   + +K  
Sbjct: 481 -------------EKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 527

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
            P   +W+     +  K+   K  + F+E +     + G  P       +LS  +    +
Sbjct: 528 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMI-----DSGCAPDGGTAKVLLSACSSEEQV 582

Query: 442 EEVEDFVNSLKKVMSMN 458
           E+V   + ++ K ++++
Sbjct: 583 EQVTSVLRTMHKGVTVS 599



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 15/331 (4%)

Query: 63  LQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQL--ELIGRV 120
           L   HA  D +L  +   LR  K++   + V EW+  K      P      L  +  G+ 
Sbjct: 134 LPSTHASWD-DLINVSVQLRLNKKWDSIILVCEWILRKS--SFQPDVICFNLLIDAYGQK 190

Query: 121 RGLESAESYFQNLSDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP---- 174
              + AES +  L +S    TE  +  L+  Y MAG ++++   + +M++   VSP    
Sbjct: 191 FQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNH-HVSPKTIG 249

Query: 175 --LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLL 232
             ++   I  L  R    E+  DV   MK D   P   +Y + +N YG  S      KL 
Sbjct: 250 VTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLY 309

Query: 233 EKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS 292
            ++ +      +  TY+ + N + + GL +KA    ++ ++   + D   YN ++  Y+ 
Sbjct: 310 CEMRSH-QCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSR 368

Query: 293 LGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
            G       ++ L +    +     Y  M+    + G   +AE +  + +  G     K 
Sbjct: 369 AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKS 428

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
             +LL  YS+   + K E +++ M + G  P
Sbjct: 429 HMLLLSAYSKARDVTKCEAIVKEMSENGVEP 459


>AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:13844834-13846708 FORWARD
           LENGTH=624
          Length = 624

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 127/267 (47%), Gaps = 4/267 (1%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           L+   V  G +  +     +M++ G  S +H Y +++S   R    ++   +   + E G
Sbjct: 300 LMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKG 359

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           +SP  ++Y   ++      ++   E L+ +++++G + +  + ++T+ + Y + G+ D+A
Sbjct: 360 LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKG-VNITQVVFNTLIDGYCRKGMVDEA 418

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNR-EYITMLG 323
            +     E K ++ D    N + S +  L K+ D  + W  +      +L+   Y  ++ 
Sbjct: 419 SMIYDVMEQKGFQADVFTCNTIASCFNRL-KRYDEAKQWLFRMMEGGVKLSTVSYTNLID 477

Query: 324 CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
              K G++EEA++L  +    G   +    N+++  Y ++G I++A  +  +M   G  P
Sbjct: 478 VYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDP 537

Query: 384 TPNSWSIIASGHVAKENMEKAFQCFKE 410
              +++ +  G    +N+++A + F E
Sbjct: 538 DSYTYTSLIHGECIADNVDEAMRLFSE 564



 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 8/242 (3%)

Query: 156 VDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRI 214
           +D  L   ++M D G  ++      ++    R  + EK   ++      G+ P+ ++Y  
Sbjct: 205 IDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNT 264

Query: 215 CLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDK 274
            +N+Y  + D   +E +L+ ++ +G +  + +TY+ +    VK G    A     +  ++
Sbjct: 265 IINAYVKQRDFSGVEGVLKVMKKDG-VVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRER 323

Query: 275 AYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE---YITMLGCLVKLGDL 331
             + D   Y  +IS      +K +M R + L  +  +K L+     Y  ++  + K+G++
Sbjct: 324 GIESDVHVYTSLISWNC---RKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEM 380

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
             AE L+ + +  G      V N L+ GY RKG++++A  +   M  KG      + + I
Sbjct: 381 GAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTI 440

Query: 392 AS 393
           AS
Sbjct: 441 AS 442



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 2/220 (0%)

Query: 139 TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHY-NNIMSLYTRTEQHEKVPDVL 197
           T+ V   L++ Y   G VD++      M+  GF + +   N I S + R +++++    L
Sbjct: 398 TQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWL 457

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
             M E GV     SY   ++ Y    ++E  ++L  ++ ++G +  + +TY+ +   Y K
Sbjct: 458 FRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKG-VQPNAITYNVMIYAYCK 516

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
            G   +A       E      D+  Y  +I          + MRL+         Q +  
Sbjct: 517 QGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVT 576

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILL 357
           Y  M+  L K G  +EA  L  + +  G T D KV   L+
Sbjct: 577 YTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALI 616



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 2/182 (1%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
            + +C+      D++   + +M + G  +S + Y N++ +Y +    E+   +   M   
Sbjct: 439 TIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSK 498

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           GV P+  +Y + + +Y  +  ++   KL   +E  G +  D  TY+++ +    A   D+
Sbjct: 499 GVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANG-MDPDSYTYTSLIHGECIADNVDE 557

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLG 323
           A+    +   K   +++V Y  MIS  +  GK  +   L+   K       N+ Y  ++G
Sbjct: 558 AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIG 617

Query: 324 CL 325
            +
Sbjct: 618 SM 619


>AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 129/286 (45%), Gaps = 8/286 (2%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYR 213
           G+++K L +M  ++D    + + YN ++  Y R     +  +V   M+E G  PD  +Y 
Sbjct: 381 GAINKLLDEM--VRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYC 438

Query: 214 ICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED 273
             ++ +     L+    + ++++  G ++ D  TYS + N   KAG    A     +  D
Sbjct: 439 TLIDIHAKAGFLDIAMDMYQRMQA-GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVD 497

Query: 274 KAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
           +    + V YN M+  +A     ++ ++L++  ++   +     Y  ++  L   G LEE
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 557

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           AE +  + +      D  V  +L+  + + G +EKA    ++M+  G  P   + + + S
Sbjct: 558 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 617

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
             +    + +A++  +  LA+     G RP     + +LS  TD R
Sbjct: 618 TFLRVNKIAEAYELLQNMLAL-----GLRPSLQTYTLLLSCCTDGR 658



 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 9/284 (3%)

Query: 170 GFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENM 228
           GF    H Y  ++    R +Q   +  +L  M  DG  P+  +Y   ++SYG  + L   
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 229 EKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
             +  +++ E     D +TY T+ + + KAG  D A+   ++ +      D   Y+ +I+
Sbjct: 419 MNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 289 HYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
                G      +L+ ++    C   L   Y  M+    K  + + A KL    + +G  
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNL-VTYNIMMDLHAKARNYQNALKLYRDMQNAGFE 536

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D    +I++      G +E+AE +   M  K   P    + ++        N+EKA+Q 
Sbjct: 537 PDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQW 596

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
           ++  L     + G RP     +S+LS       I E  + + ++
Sbjct: 597 YQAML-----HAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 279 DAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
           + V YN +I  Y       + M ++ ++Q+  CK      Y T++    K G L+ A  +
Sbjct: 398 NTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD-RVTYCTLIDIHAKAGFLDIAMDM 456

Query: 338 LGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
             + +  G + D    ++++    + G +  A  +   MVD+G TP   +++I+   H  
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516

Query: 398 KENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVED-FVNSLKKVMS 456
             N + A + +++      +N G+ P     S ++  +     +EE E  F    +K   
Sbjct: 517 ARNYQNALKLYRD-----MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWI 571

Query: 457 MNRDMYLSLIKLYVRCG 473
            +  +Y  L+ L+ + G
Sbjct: 572 PDEPVYGLLVDLWGKAG 588


>AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 129/286 (45%), Gaps = 8/286 (2%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYR 213
           G+++K L +M  ++D    + + YN ++  Y R     +  +V   M+E G  PD  +Y 
Sbjct: 381 GAINKLLDEM--VRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYC 438

Query: 214 ICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED 273
             ++ +     L+    + ++++  G ++ D  TYS + N   KAG    A     +  D
Sbjct: 439 TLIDIHAKAGFLDIAMDMYQRMQA-GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVD 497

Query: 274 KAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
           +    + V YN M+  +A     ++ ++L++  ++   +     Y  ++  L   G LEE
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 557

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           AE +  + +      D  V  +L+  + + G +EKA    ++M+  G  P   + + + S
Sbjct: 558 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 617

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
             +    + +A++  +  LA+     G RP     + +LS  TD R
Sbjct: 618 TFLRVNKIAEAYELLQNMLAL-----GLRPSLQTYTLLLSCCTDGR 658



 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 9/284 (3%)

Query: 170 GFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENM 228
           GF    H Y  ++    R +Q   +  +L  M  DG  P+  +Y   ++SYG  + L   
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 229 EKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
             +  +++ E     D +TY T+ + + KAG  D A+   ++ +      D   Y+ +I+
Sbjct: 419 MNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 289 HYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
                G      +L+ ++    C   L   Y  M+    K  + + A KL    + +G  
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNL-VTYNIMMDLHAKARNYQNALKLYRDMQNAGFE 536

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D    +I++      G +E+AE +   M  K   P    + ++        N+EKA+Q 
Sbjct: 537 PDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQW 596

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
           ++  L     + G RP     +S+LS       I E  + + ++
Sbjct: 597 YQAML-----HAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 279 DAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
           + V YN +I  Y       + M ++ ++Q+  CK      Y T++    K G L+ A  +
Sbjct: 398 NTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD-RVTYCTLIDIHAKAGFLDIAMDM 456

Query: 338 LGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
             + +  G + D    ++++    + G +  A  +   MVD+G TP   +++I+   H  
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516

Query: 398 KENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVED-FVNSLKKVMS 456
             N + A + +++      +N G+ P     S ++  +     +EE E  F    +K   
Sbjct: 517 ARNYQNALKLYRD-----MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWI 571

Query: 457 MNRDMYLSLIKLYVRCG 473
            +  +Y  L+ L+ + G
Sbjct: 572 PDEPVYGLLVDLWGKAG 588


>AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16915860-16918238 FORWARD
           LENGTH=709
          Length = 709

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 149/342 (43%), Gaps = 12/342 (3%)

Query: 49  GDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPG 108
           GDPS   + +L      G + +   L  I+  L    R  +A  + E +   G   I P 
Sbjct: 283 GDPS-KALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSG---IKPR 338

Query: 109 DRAVQLELIGRVRG--LESAESYFQNLSDSDKT--EKVHGALLNCYVMAGSVDKSLSQMQ 164
            RA    L G V+   L+ AES    +     +  E  +  L++ YV AG  + +   ++
Sbjct: 339 TRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLK 398

Query: 165 KMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGAR 222
           +M + G V P    ++ +++ +    + +K   VL  MK  GV PD   Y + ++++G  
Sbjct: 399 EM-EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKF 457

Query: 223 SDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVA 282
           + L++     +++ +EG I  D +T++T+ + + K G    A    +  E +     A  
Sbjct: 458 NCLDHAMTTFDRMLSEG-IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATT 516

Query: 283 YNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWE 342
           YN MI+ Y    +  DM RL    K          + T++    K G   +A + L + +
Sbjct: 517 YNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMK 576

Query: 343 LSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPT 384
             G      + N L+  Y+++GL E+A    R M   G  P+
Sbjct: 577 SVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 618



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 7/252 (2%)

Query: 160 LSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSY 219
           LSQ Q +      +PL YN ++    R    EK  +++A M++DG   D  +Y + + S 
Sbjct: 189 LSQKQTL------TPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSL 242

Query: 220 GARSDLENMEKLLEKIETEGD-IAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKR 278
              + ++++  L    E E D + +D    + +   + K+G   KAL  L   +      
Sbjct: 243 TRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSA 302

Query: 279 DAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLL 338
                  +IS  A  G+  +   L++  + +  K   R Y  +L   VK G L++AE ++
Sbjct: 303 KTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMV 362

Query: 339 GQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAK 398
            + E  G + D    ++L+  Y   G  E A  +L+ M      P    +S + +G   +
Sbjct: 363 SEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDR 422

Query: 399 ENMEKAFQCFKE 410
              +K FQ  KE
Sbjct: 423 GEWQKTFQVLKE 434



 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 90/200 (45%), Gaps = 1/200 (0%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           +++ G+ P   +Y   L  Y     L++ E ++ ++E  G ++ D  TYS + + YV AG
Sbjct: 330 LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG-VSPDEHTYSLLIDAYVNAG 388

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
             + A I LK+ E    + ++  ++ +++ +   G+ +   ++ K  K    K   + Y 
Sbjct: 389 RWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 448

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
            ++    K   L+ A     +    G   D    N L+  + + G    AE M  +M  +
Sbjct: 449 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERR 508

Query: 380 GKTPTPNSWSIIASGHVAKE 399
           G  P   +++I+ + +  +E
Sbjct: 509 GCLPCATTYNIMINSYGDQE 528


>AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16001036-16003072 REVERSE
           LENGTH=678
          Length = 678

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/410 (21%), Positives = 169/410 (41%), Gaps = 54/410 (13%)

Query: 86  RFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKV--H 143
           +F +AL V   M     C +      + +++ G++  ++ A+  F +L   D    V  +
Sbjct: 310 KFLEALSVFAEMKEVN-CALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSY 368

Query: 144 GALLNCYVMAGSVDKS--LSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
             +L  Y  A    ++  L ++ + KD+   + + YN ++ +Y +T +HEK  +++  M+
Sbjct: 369 NTILRVYGEAELFGEAIHLFRLMQRKDIE-QNVVTYNTMIKIYGKTMEHEKATNLVQEMQ 427

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G+ P+  +Y   ++ +G    L+    L +K+ + G + +D + Y T+   Y + GL 
Sbjct: 428 SRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG-VEIDQVLYQTMIVAYERVGL- 485

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
                                          +G  K ++   KL  DN  ++      T 
Sbjct: 486 -------------------------------MGHAKRLLHELKL-PDNIPRE------TA 507

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +  L K G  EEA  +  Q   SG   D  V   ++  YSR         +   M   G 
Sbjct: 508 ITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGY 567

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
            P  N  +++ + +  +   EKA   ++E      + +G     +V   +LS  +  +D 
Sbjct: 568 FPDSNVIAMVLNAYGKQREFEKADTVYRE-----MQEEGCVFPDEVHFQMLSLYSSKKDF 622

Query: 442 EEVEDFVNSLKKVMSMN-RDMYLSLIKLYVRCGREVDG--VLESMKADNI 488
           E VE     L+   ++N ++++L +  LY R  +  D   V+  M+   I
Sbjct: 623 EMVESLFQRLESDPNVNSKELHLVVAALYERADKLNDASRVMNRMRERGI 672



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 156/361 (43%), Gaps = 30/361 (8%)

Query: 114 LELIGRVRGLESAESYFQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGF 171
           +EL  R+     A S F  L  S  T  +  + +++N Y  A    ++   +++M + G 
Sbjct: 232 IELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGV 291

Query: 172 V-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
           + + + Y+ ++S+Y    +  +   V A MKE   + D+ +  I ++ YG    ++  ++
Sbjct: 292 LPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADR 351

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           L   +  + DI  + ++Y+T+   Y +A L  +A+   +  + K  +++ V YN MI  Y
Sbjct: 352 LFWSLR-KMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIY 410

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDF 350
               + +    L +  +    +     Y T++    K G L+ A  L  +   SG   D 
Sbjct: 411 GKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQ 470

Query: 351 KVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKEN---MEKAFQ- 406
            +   +++ Y R GL+  A+ +L  +      P   + +I+A     +E      +AF+ 
Sbjct: 471 VLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFES 530

Query: 407 -------CFKEALAVLAENK---------------GWRPKSDVVSSILSWVTDNRDIEEV 444
                   F   + + + N+               G+ P S+V++ +L+     R+ E+ 
Sbjct: 531 GEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKA 590

Query: 445 E 445
           +
Sbjct: 591 D 591



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 10/273 (3%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKM-KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  L+  +   G  D +LS +QKM +D      + Y+N++ L  R   + K   + + +K
Sbjct: 193 YSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLK 252

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G++PD+ +Y   +N YG ++ L    +LL K   E  +  + ++YST+ + YV+    
Sbjct: 253 RSGITPDLVAYNSMINVYG-KAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKF 311

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL-WKLQKDNCKKQLNREYIT 320
            +AL    + ++     D    N MI  Y  L   K+  RL W L+K + +  +   Y T
Sbjct: 312 LEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNV-VSYNT 370

Query: 321 ML---GCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           +L   G     G+     +L+ + ++  N   +   N ++  Y +    EKA  +++ M 
Sbjct: 371 ILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY---NTMIKIYGKTMEHEKATNLVQEMQ 427

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            +G  P   ++S I S       +++A   F++
Sbjct: 428 SRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 460


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 122/272 (44%), Gaps = 12/272 (4%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAM---MK 201
           +LLN +     + ++++ + +M +MG+  P       +L     QH K  + +A+   M 
Sbjct: 140 SLLNGFCHGNRISEAVALVDQMVEMGY-QP-DTVTFTTLVHGLFQHNKASEAVALVERMV 197

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G  PD+ +Y   +N    R + +    LL K+E +G I  D + YSTV +   K    
Sbjct: 198 VKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME-KGKIEADVVIYSTVIDSLCKYRHV 256

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT- 320
           D AL    + ++K  + D   Y+ +IS   + G+  D  RL     D  ++++N   +T 
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL---SDMLERKINPNVVTF 313

Query: 321 --MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
             ++    K G L EAEKL  +        +    N L+ G+     +++A+ +   MV 
Sbjct: 314 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           K   P   +++ + +G    + +    + F++
Sbjct: 374 KDCLPDVVTYNTLINGFCKAKKVVDGMELFRD 405



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 155/393 (39%), Gaps = 44/393 (11%)

Query: 56  VPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLE 115
           V +++  ++ G+         +V  L    + ++A+ + E M  KG  P L    AV   
Sbjct: 155 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214

Query: 116 LIGRVRGLESAESYFQNLSDSDKTEK---VHGALLNCYVMAGSVDKSLSQMQKMKDMGFV 172
           L  R  G         N  +  K E    ++  +++       VD +L+   +M + G +
Sbjct: 215 LCKR--GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG-I 271

Query: 173 SP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
            P    Y++++S      +      +L+ M E  ++P++ ++   ++++     L   EK
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           L +++  +  I  + +TY+++ N +      D+A         K    D V YN +I+ +
Sbjct: 332 LFDEM-IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390

Query: 291 ASLGKKKDMMRLWK---------------------LQKDNCK------KQLNRE------ 317
               K  D M L++                      Q  +C       KQ+  +      
Sbjct: 391 CKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNI 450

Query: 318 --YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
             Y T+L  L K G LE+A  +    + S    D    NI+  G  + G +E    +  S
Sbjct: 451 MTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCS 510

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCF 408
           +  KG  P   +++ + SG   K   E+A+  F
Sbjct: 511 LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLF 543



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 10/253 (3%)

Query: 123 LESAESYFQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNN 179
           L+ A+  F  +   D    V  +  L+N +  A  V   +   + M   G V + + Y  
Sbjct: 361 LDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTT 420

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
           ++  + +    +    V   M  DGV P+I +Y   L+       LE    + E ++ + 
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ-KS 479

Query: 240 DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDM 299
            +  D  TY+ ++    KAG  +           K  K D +AYN MIS +   G K++ 
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539

Query: 300 MRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQ-----WELSGNTYDFKVPN 354
             L+   K++     +  Y T++   ++ GD   + +L+ +     +    +TY   V +
Sbjct: 540 YTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGL-VTD 598

Query: 355 ILLIGYSRKGLIE 367
           +L  G   KG +E
Sbjct: 599 MLHDGRLDKGFLE 611


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 43/307 (14%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGF------VSPL-----HYNNIMSLYTRTEQ-- 189
           +  L+NC+     +  +L+ + KM  +G+      +S L     H   I       +Q  
Sbjct: 48  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 107

Query: 190 --------------------HEKVPDVLAM---MKEDGVSPDIFSYRICLNSYGARSDLE 226
                               H K  + +A+   M + G  P++ +Y + +N    R D++
Sbjct: 108 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 167

Query: 227 NMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHM 286
               LL K+E    I  D + ++T+ +   K    D AL   K+ E K  + + V Y+ +
Sbjct: 168 LAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 226

Query: 287 ISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT---MLGCLVKLGDLEEAEKLLGQWEL 343
           IS   S G+  D  +L     D  +K++N   +T   ++   VK G   EAEKL      
Sbjct: 227 ISCLCSYGRWSDASQLL---SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIK 283

Query: 344 SGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEK 403
                D    N L+ G+     ++KA+ M   MV K   P  ++++ +  G    + +E 
Sbjct: 284 RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVED 343

Query: 404 AFQCFKE 410
             + F+E
Sbjct: 344 GTELFRE 350



 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 3/222 (1%)

Query: 173 SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLL 232
           S   +N ++S   + ++ + V  +   M+  G+S ++++Y I +N +  RS +     LL
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68

Query: 233 EKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS 292
            K+   G      +T S++ N Y        A+  + +  +  Y+ D + +  +I     
Sbjct: 69  GKMMKLG-YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 293 LGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFK 351
             K  + + L  ++ +  C+  L   Y  ++  L K GD++ A  LL + E +    D  
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNL-VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186

Query: 352 VPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           + N ++    +   ++ A  + + M  KG  P   ++S + S
Sbjct: 187 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 228


>AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20370293-20372848 FORWARD
           LENGTH=851
          Length = 851

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 135/301 (44%), Gaps = 12/301 (3%)

Query: 142 VHGALLNCYVMAGSVDKS---LSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLA 198
           V+  ++N     G   K+   L+ M + K +  VS + YN+I+  + +  + +       
Sbjct: 550 VYQTIINGLCKVGQTSKARELLANMIEEKRL-CVSCMSYNSIIDGFFKEGEMDSAVAAYE 608

Query: 199 MMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKA 258
            M  +G+SP++ +Y   +N     + ++   ++ ++++ +G + +D   Y  + + + K 
Sbjct: 609 EMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKG-VKLDIPAYGALIDGFCKR 667

Query: 259 GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNRE 317
              + A     +  ++        YN +IS + +LG     + L+K + KD  +  L   
Sbjct: 668 SNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGT- 726

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y T++  L+K G+L  A +L  + +  G   D  +  +++ G S+KG   K   M   M 
Sbjct: 727 YTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMK 786

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTD 437
               TP    ++ + +GH  + N+++AF+   E L     +KG  P       ++S    
Sbjct: 787 KNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEML-----DKGILPDGATFDILVSGQVG 841

Query: 438 N 438
           N
Sbjct: 842 N 842



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 157/366 (42%), Gaps = 11/366 (3%)

Query: 53  LSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAV 112
           +S + + +   +EG +        +++  R      +AL+  + M   GL P +     V
Sbjct: 356 VSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSV---FHV 412

Query: 113 QLELIGRVRGLESAES---YFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDM 169
              + G ++G +  E+   + ++         V   +L+     G  D++   + KM+  
Sbjct: 413 HTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESR 472

Query: 170 GFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLEN 227
           G + P  + YNN+M  + R +  +    V + + E G+ P+ ++Y I ++      D +N
Sbjct: 473 G-IGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQN 531

Query: 228 MEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKK-CEDKAYKRDAVAYNHM 286
             +++  + T  +I V+ + Y T+ N   K G   KA   L    E+K      ++YN +
Sbjct: 532 ALEVVNHM-TSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSI 590

Query: 287 ISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGN 346
           I  +   G+    +  ++    N        Y +++  L K   +++A ++  + +  G 
Sbjct: 591 IDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGV 650

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
             D      L+ G+ ++  +E A  +   ++++G  P+   ++ + SG     NM  A  
Sbjct: 651 KLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALD 710

Query: 407 CFKEAL 412
            +K+ L
Sbjct: 711 LYKKML 716



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M  DG+S ++ +    +  +   +DL +   L +K+E EG  + + +T+S +  ++ K G
Sbjct: 330 MLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGP-SPNSVTFSVLIEWFRKNG 388

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
             +KAL + KK E           + +I  +    K ++ ++L+    ++ +  L   ++
Sbjct: 389 EMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLF---DESFETGLANVFV 445

Query: 320 --TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
             T+L  L K G  +EA +LL + E  G   +    N +++G+ R+  ++ A  +  +++
Sbjct: 446 CNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNIL 505

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
           +KG  P   ++SI+  G     + + A +
Sbjct: 506 EKGLKPNNYTYSILIDGCFRNHDEQNALE 534


>AT5G21222.1 | Symbols:  | protein kinase family protein |
           chr5:7209422-7213700 FORWARD LENGTH=831
          Length = 831

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 158/401 (39%), Gaps = 20/401 (4%)

Query: 28  CSASTTV--TINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRK 85
           CS  TT     +R  L + +   G P      +    ++EGH         +V  L  +K
Sbjct: 310 CSGGTTCGDVRSRTKLMNGLIERGRPQ-EAHSIFNTLIEEGHKPSLITYTTLVTALTRQK 368

Query: 86  RFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSD--KTEKVH 143
            F   L +   +   GL P      A+ +        L+ A   F+ + +S    T    
Sbjct: 369 HFHSLLSLISKVEKNGLKPDTILFNAI-INASSESGNLDQAMKIFEKMKESGCKPTASTF 427

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMK 201
             L+  Y   G +++S   +  M     + P     N ++  +    + E+  +++  M+
Sbjct: 428 NTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             GV PD+ ++     +Y         E ++        +  +  T  T+ N Y + G  
Sbjct: 488 SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKM 547

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASL------GKKKDMMRLWKLQKDNCKKQLN 315
           ++AL +  + ++     +   +N +I  + ++      G+  D+M  + ++ D       
Sbjct: 548 EEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVT---- 603

Query: 316 REYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
             + T++     +GD++  E++       G   D    +IL  GY+R G  EKAE +L  
Sbjct: 604 --FSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQ 661

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLA 416
           M   G  P    ++ I SG  +   M+KA Q +K+   ++ 
Sbjct: 662 MRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVG 702


>AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8947426-8949424 FORWARD
           LENGTH=599
          Length = 599

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 158/340 (46%), Gaps = 38/340 (11%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
           A++N +  +G+++ ++  + KMK++G   +   YN ++  Y    + E+  ++L +M E+
Sbjct: 120 AVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEE 179

Query: 204 G---VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG- 259
           G   V P+I ++ + + ++  +  +E   ++++K+E E  +  D +TY+T+A  YV+ G 
Sbjct: 180 GNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKME-ECGVRPDTVTYNTIATCYVQKGE 238

Query: 260 -LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKD---------- 308
            ++ ++ +  K    +  K +      ++  Y   G+ +D +R  +  K+          
Sbjct: 239 TVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVF 298

Query: 309 -----NCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTY----------DFKVP 353
                   + ++R+ I  +   + L    E  +L+G  ++               D    
Sbjct: 299 NSLINGFVEVMDRDGIDEVTLTLLLMSFNEEVELVGNQKMKVQVLTLMKECNVKADVITY 358

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
           + ++  +S  G +EKA  + + MV  G  P  +++SI+A G+V  +  +KA +   E L 
Sbjct: 359 STVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELL-ETLI 417

Query: 414 VLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKK 453
           V +     RP   + ++++S    N  +++     N + K
Sbjct: 418 VES-----RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCK 452


>AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3134107-3135930 REVERSE
           LENGTH=607
          Length = 607

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 115/264 (43%), Gaps = 2/264 (0%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           + AL+N       +D +     +M   G + + + +  ++  ++R  + + + +    M 
Sbjct: 313 YSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKML 372

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G+ PDI  Y   +N +    DL     +++ +   G +  D +TY+T+ + + + G  
Sbjct: 373 SKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG-LRPDKITYTTLIDGFCRGGDV 431

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
           + AL   K+ +    + D V ++ ++      G+  D  R  +       K  +  Y  M
Sbjct: 432 ETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMM 491

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +    K GD +   KLL + +  G+       N+LL G  + G ++ A+ +L +M++ G 
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGV 551

Query: 382 TPTPNSWSIIASGHVAKENMEKAF 405
            P   +++ +  GH    N  K +
Sbjct: 552 VPDDITYNTLLEGHHRHANSSKRY 575



 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/237 (19%), Positives = 108/237 (45%), Gaps = 7/237 (2%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           +N +++ Y +    ++   +   M++    PD+F+Y   +N+    + ++    L +++ 
Sbjct: 278 FNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMC 337

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
             G I  D + ++T+ + + + G  D      +K   K  + D V YN +++ +    K 
Sbjct: 338 KRGLIPND-VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC---KN 393

Query: 297 KDMMRLWKLQKDNCKKQLNRE---YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
            D++    +     ++ L  +   Y T++    + GD+E A ++  + + +G   D    
Sbjct: 394 GDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGF 453

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           + L+ G  ++G +  AE  LR M+  G  P   +++++      K + +  F+  KE
Sbjct: 454 SALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKE 510


>AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15637177-15639450 REVERSE
           LENGTH=757
          Length = 757

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/407 (20%), Positives = 161/407 (39%), Gaps = 14/407 (3%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELI---GRVRGLESAESYFQNL 133
           +   L   K+   ALQ   W    GL   +  DR   +++I   G V  L  A     ++
Sbjct: 120 VYNVLHGAKKLEHALQFFRWTERSGL---IRHDRDTHMKMIKMLGEVSKLNHARCILLDM 176

Query: 134 SDSDKT--EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQH 190
            +      E +   L+  Y  AG V +S+   QKMKD+G    +  YN++  +  R  ++
Sbjct: 177 PEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRY 236

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYST 250
                    M  +GV P   +Y + L  +     LE   +  E ++T G I+ D  T++T
Sbjct: 237 MMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRG-ISPDDATFNT 295

Query: 251 VANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNC 310
           + N + +    D+A     + +        V+Y  MI  Y ++ +  D +R+++  + + 
Sbjct: 296 MINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSG 355

Query: 311 KKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSG-NTYDFKVPNILLIGYSRKGLIEKA 369
            +     Y T+L  L   G + EA+ +L           D  +   LL+  S+ G +  A
Sbjct: 356 IEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAA 415

Query: 370 ETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK---EALAVLAENKGWRPKSD 426
             +L++M           + ++           +A +      E   +L        +  
Sbjct: 416 TEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDTLEMEPS 475

Query: 427 VVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCG 473
             + I+ ++ +N    + E     L K    ++D   +LI+ + + G
Sbjct: 476 AYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNLIRGHAKEG 522


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 146/342 (42%), Gaps = 19/342 (5%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAM--- 199
           +   +NC+     +  +L+ + KM  +G+   +    + SL       +++ D +A+   
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIV--TLSSLLNGYCHSKRISDAVALVDQ 178

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M E G  PD F++   ++     +       L++++   G    D +TY TV N   K G
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTVVNGLCKRG 237

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
             D AL  LKK E    + D V YN +I          D + L+    +   +     Y 
Sbjct: 238 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297

Query: 320 TMLGCLVKLGDLEEAEKLLG---QWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSM 376
           +++ CL   G   +A +LL    + +++ N   F     L+  + ++G + +AE +   M
Sbjct: 298 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA---LIDAFVKEGKLVEAEKLYDEM 354

Query: 377 VDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVT 436
           + +   P   ++S + +G    + +++A   F+     L  +K   P     S+++    
Sbjct: 355 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-----LMISKDCFPNVVTYSTLIKGFC 409

Query: 437 DNRDIEE-VEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVD 477
             + +EE +E F    ++ +  N   Y +LI  + +  R+ D
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ-ARDCD 450



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 4/240 (1%)

Query: 156 VDKSLSQMQKM-KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRI 214
           VD ++     M K   F S + +N ++S   +  + E V  +   M+  G+S D+++Y I
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 215 CLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDK 274
            +N +  RS L     +L K+   G    D +T S++ N Y  +     A+  + +  + 
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLG-YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 275 AYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
            YK D   +  +I       K  + + L  ++ +  C+  L   Y T++  L K GD++ 
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL-VTYGTVVNGLCKRGDIDL 241

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           A  LL + E      D  + N ++ G  +   ++ A  +   M +KG  P   ++S + S
Sbjct: 242 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLIS 301



 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/235 (18%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           Y+++++ +   ++ ++   +  +M      P++ +Y   +  +     +E   +L  ++ 
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK- 295
             G +  + +TY+T+ + + +A   D A +  K+        + + YN ++      GK 
Sbjct: 426 QRGLVG-NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 484

Query: 296 KKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
            K M+    LQ+   +  +   Y  M+  + K G +E+  +L     L G + +    N 
Sbjct: 485 AKAMVVFEYLQRSTMEPDI-YTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           ++ G+ RKG  E+A+++L+ M + G  P   +++ +    +   + E + +  KE
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKE 598


>AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23795563 FORWARD LENGTH=806
          Length = 806

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 141/330 (42%), Gaps = 17/330 (5%)

Query: 87  FTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKV-HGA 145
           F +A+ + + M   GL P++     +   L    R LE+A    + +      + V +G 
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGT 266

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
           ++N     G    +L+ + KM++   + P  + Y+ I+    +   H     + + M E 
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEET-HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G++P++F+Y   ++ + +     + ++LL  +  E +I  D +T+    N  + A +K+ 
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-IEREINPDVLTF----NALISASVKEG 380

Query: 264 ALIYLKKCEDKAYKR----DAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
            L   +K  D+   R    D V YN MI  +    +  D   ++ L         N    
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFN---- 436

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           T++    +   ++E  +LL +    G   +    N L+ G+     +  A+ + + M+  
Sbjct: 437 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
           G  P   + +I+  G    E +E+A + F+
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFE 526



 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 10/246 (4%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVS-PLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
            +++ Y  A  VD+ +  ++++   G V+    YN ++  +   +      D+   M   
Sbjct: 437 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           GV PD  +  I L  +     LE   +L E I+    I +D + Y+ + +   K    D+
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFEVIQMS-KIDLDTVAYNIIIHGMCKGSKVDE 555

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITML- 322
           A            + D   YN MIS +       D   L+   KDN  +  N  Y T++ 
Sbjct: 556 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 615

Query: 323 GCLVKLGDLEEAEKLLGQWE---LSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           GCL K G+++++ +L+ +      SG+ +  K+   ++   S + +I   E  LR  ++ 
Sbjct: 616 GCL-KAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVSDEEII---ENYLRPKING 671

Query: 380 GKTPTP 385
             +  P
Sbjct: 672 ETSSIP 677



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 43/278 (15%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M   G+  D+ +Y   +N      D ++   LL K+E E  I  D + YS + +   K G
Sbjct: 252 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME-ETHIKPDVVIYSAIIDRLCKDG 310

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
               A     +  +K    +   YN MI  + S G+  D  RL    +D  ++++N + +
Sbjct: 311 HHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL---RDMIEREINPDVL 367

Query: 320 T---MLGCLVKLGDLEEAEKLL-------------------------GQWELSGNTYDFK 351
           T   ++   VK G L EAEKL                           +++ + + +D  
Sbjct: 368 TFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM 427

Query: 352 VP------NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAF 405
                   N ++  Y R   +++   +LR +  +G      +++ +  G    +N+  A 
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487

Query: 406 QCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEE 443
             F+E ++      G  P +   + +L    +N  +EE
Sbjct: 488 DLFQEMIS-----HGVCPDTITCNILLYGFCENEKLEE 520


>AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr2:17403744-17407127
           REVERSE LENGTH=822
          Length = 822

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL-HYNNIMSLYTRTEQHEKVPDVLAMMK 201
           + AL+  Y + G    +LS +  +K  G +  +  Y  +++ Y R+ Q  K  +V  MM+
Sbjct: 358 YNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMR 417

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           ++   P++ +Y   +++YG+   L    ++  ++E +G I  + ++  T+     ++  K
Sbjct: 418 KERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDG-IKPNVVSVCTLLAACSRSKKK 476

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
                 L   + +    +  AYN  I  Y +  + +  + L++  +    K  +  +  +
Sbjct: 477 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 536

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +    ++    EA   L + E        +V + +L  YS++G + +AE++   M   G 
Sbjct: 537 ISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGC 596

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
            P   +++ +   + A E   KA + F E      E  G  P S   S+++
Sbjct: 597 EPDVIAYTSMLHAYNASEKWGKACELFLE-----MEANGIEPDSIACSALM 642


>AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:20459238-20461504 FORWARD
           LENGTH=723
          Length = 723

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 146/370 (39%), Gaps = 46/370 (12%)

Query: 78  VKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVR--GLESAESY--FQNL 133
           +  L   +R+  A +V E M    + P    D      LI  +R  G  + E +  F+ +
Sbjct: 280 ISGLSASQRYDDAWEVYEAMDKINVYP----DNVTCAILITTLRKAGRSAKEVWEIFEKM 335

Query: 134 SDSDK--TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVS-PLHYNNIMSLYTRTEQH 190
           S+     ++ V G L+  +   G  +++L    +M+  G  S  + YN +M  Y ++   
Sbjct: 336 SEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHI 395

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG----------- 239
           E+V  +   M++ G+ P   +Y I +++Y  R   + +E LL ++E  G           
Sbjct: 396 EEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCL 455

Query: 240 -----------DIAVDWM-------------TYSTVANFYVKAGLKDKALIYLKKCEDKA 275
                      D+A D               +Y+ + + Y  +G  +KA    ++   + 
Sbjct: 456 ISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEG 515

Query: 276 YKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAE 335
            K     Y  ++  +   G    +M +WKL      K     Y T+L    K G   EA 
Sbjct: 516 IKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEAR 575

Query: 336 KLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGH 395
            ++ ++   G        N+L+  Y+R G   K   +L+ M      P   ++S +    
Sbjct: 576 DVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAF 635

Query: 396 VAKENMEKAF 405
           V   + ++AF
Sbjct: 636 VRVRDFKRAF 645


>AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23793641 FORWARD LENGTH=666
          Length = 666

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 141/330 (42%), Gaps = 17/330 (5%)

Query: 87  FTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKV-HGA 145
           F +A+ + + M   GL P++     +   L    R LE+A    + +      + V +G 
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGT 266

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
           ++N     G    +L+ + KM++   + P  + Y+ I+    +   H     + + M E 
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEET-HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G++P++F+Y   ++ + +     + ++LL  +  E +I  D +T+    N  + A +K+ 
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-IEREINPDVLTF----NALISASVKEG 380

Query: 264 ALIYLKKCEDKAYKR----DAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
            L   +K  D+   R    D V YN MI  +    +  D   ++ L         N    
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFN---- 436

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           T++    +   ++E  +LL +    G   +    N L+ G+     +  A+ + + M+  
Sbjct: 437 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
           G  P   + +I+  G    E +E+A + F+
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFE 526



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 109/274 (39%), Gaps = 43/274 (15%)

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G+  D+ +Y   +N      D ++   LL K+E E  I  D + YS + +   K G    
Sbjct: 256 GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME-ETHIKPDVVIYSAIIDRLCKDGHHSD 314

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT--- 320
           A     +  +K    +   YN MI  + S G+  D  RL    +D  ++++N + +T   
Sbjct: 315 AQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL---RDMIEREINPDVLTFNA 371

Query: 321 MLGCLVKLGDLEEAEKLL-------------------------GQWELSGNTYDFKVP-- 353
           ++   VK G L EAEKL                           +++ + + +D      
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPD 431

Query: 354 ----NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
               N ++  Y R   +++   +LR +  +G      +++ +  G    +N+  A   F+
Sbjct: 432 VVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQ 491

Query: 410 EALAVLAENKGWRPKSDVVSSILSWVTDNRDIEE 443
           E ++      G  P +   + +L    +N  +EE
Sbjct: 492 EMIS-----HGVCPDTITCNILLYGFCENEKLEE 520



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/269 (16%), Positives = 113/269 (42%), Gaps = 10/269 (3%)

Query: 171 FVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
           F   + YN+++  + +  + +    +  +M     SPD+ ++   ++ Y     ++   +
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQ 453

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           LL +I   G +A +  TY+T+ + + +    + A    ++        D +  N ++  +
Sbjct: 454 LLREISRRGLVA-NTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 512

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDF 350
               K ++ + L+++ + +        Y  ++  + K   ++EA  L     + G   D 
Sbjct: 513 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 572

Query: 351 KVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           +  N+++ G+  K  I  A  +   M D G  P  ++++ +  G +    ++K+ +   E
Sbjct: 573 QTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE 632

Query: 411 ALAVLAENKGWRPKSDVVSSILSWVTDNR 439
                  + G+   +  +  +   +TD R
Sbjct: 633 -----MRSNGFSGDAFTIKMVADLITDGR 656


>AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28020777-28023068 FORWARD
           LENGTH=763
          Length = 763

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 168/418 (40%), Gaps = 49/418 (11%)

Query: 75  QRIVKTLRTRKRFTQALQVSEWMSSK-GLCPILPGDRAVQLELIGRVRGLESAESYFQNL 133
           + +   ++ +K   +AL++   M  + G    L   R+V +E +G     E+ E    ++
Sbjct: 8   KHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSV-IEKLGYYGKFEAMEEVLVDM 66

Query: 134 SDSDKTEKVHGALLNC---YVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTE 188
            ++     + G  +     Y   G V ++++  ++M D     P    YN IMS+   + 
Sbjct: 67  RENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSG 125

Query: 189 QHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTY 248
             ++   V   M++ G++PD++S+ I + S+   S      +LL  + ++G   ++ + Y
Sbjct: 126 YFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG-CEMNVVAY 184

Query: 249 STVANFYVKAGLK----------------------DKALIYL------KKCE---DKAYK 277
            TV   + +   K                      +K L  L      K+CE   DK  K
Sbjct: 185 CTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK 244

Query: 278 RDAV----AYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
           R  +     YN  I      G+    +R+     +   K     Y  ++  L K    +E
Sbjct: 245 RGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           AE  LG+    G   D    N L+ GY + G+++ AE ++   V  G  P   ++  +  
Sbjct: 305 AEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLID 364

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
           G   +    +A   F EAL      KG +P   + ++++  +++   I E     N +
Sbjct: 365 GLCHEGETNRALALFNEALG-----KGIKPNVILYNTLIKGLSNQGMILEAAQLANEM 417



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 129/300 (43%), Gaps = 11/300 (3%)

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           ++  + E G  PD+ +Y   +      S  +  E  L K+  EG +  D  TY+T+   Y
Sbjct: 273 MVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG-LEPDSYTYNTLIAGY 331

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN 315
            K G+   A   +       +  D   Y  +I      G+    + L+        K   
Sbjct: 332 CKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 316 REYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
             Y T++  L   G + EA +L  +    G   + +  NIL+ G  + G +  A+ +++ 
Sbjct: 392 ILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKV 451

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWV 435
           M+ KG  P   +++I+  G+  +  ME A     E L V+ +N G  P     +S+L+ +
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENAL----EILDVMLDN-GVDPDVYTYNSLLNGL 506

Query: 436 TDNRDIEEV-EDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVD---GVLESMKADNIELD 491
                 E+V E +   ++K  + N   +  L++   R  R++D   G+LE MK  ++  D
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRY-RKLDEALGLLEEMKNKSVNPD 565



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/260 (19%), Positives = 112/260 (43%), Gaps = 13/260 (5%)

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           ++ +M   G  PDIF++ I ++ Y  +  +EN  ++L+ +   G +  D  TY+++ N  
Sbjct: 448 LVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG-VDPDVYTYNSLLNGL 506

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN 315
            K    +  +   K   +K    +   +N ++       K  + + L +  K+       
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566

Query: 316 REYITMLGCLVKLGDLEEAEKLLGQWE----LSGNTYDFKVPNILLIGYSRKGLIEKAET 371
             + T++    K GDL+ A  L  + E    +S +T  +   NI++  ++ K  +  AE 
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY---NIIIHAFTEKLNVTMAEK 623

Query: 372 MLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSI 431
           + + MVD+   P   ++ ++  G     N+   ++   E    + EN G+ P    +  +
Sbjct: 624 LFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLE----MMEN-GFIPSLTTLGRV 678

Query: 432 LSWVTDNRDIEEVEDFVNSL 451
           ++ +     + E    ++ +
Sbjct: 679 INCLCVEDRVYEAAGIIHRM 698


>AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:27721190-27724165 FORWARD
           LENGTH=991
          Length = 991

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 167/416 (40%), Gaps = 61/416 (14%)

Query: 123 LESAESYFQNLSDSDKTE--KVHGALLNCYVMAGSVDKSLSQMQKMKDMG-FVSPLHYNN 179
           L  AES  + + +   +   K +  LL+ +  AG ++ +L   +K++ +G F   + +  
Sbjct: 356 LSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRA 415

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
           ++ +  + +   +V  V+A M  + +  D  S  + +  Y     +   + L E+ + + 
Sbjct: 416 VLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDC 475

Query: 240 DIAV----------------------------------DWMTYSTVANFYVKAGLKDKAL 265
            ++                                   D + Y+ +   Y KA L +KAL
Sbjct: 476 VLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKAL 535

Query: 266 IYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCL 325
              K  +++    D   YN +    A +    +  R+     D+  K   + Y  M+   
Sbjct: 536 SLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASY 595

Query: 326 VKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTP 385
           V+LG L +A  L    E +G   +  V   L+ G++  G++E+A    R M + G     
Sbjct: 596 VRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHG----- 650

Query: 386 NSWSIIASGHVAKENMEKAFQ---CFKEALAVLAENKGWRPKSDVVS--SILSWVTDNRD 440
                + S H+   ++ KA+    C +EA  V  + K      DV +  S+LS   D   
Sbjct: 651 -----VQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGI 705

Query: 441 IEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEMEE 496
           + E E   N+L++  + +   + +++ LY   G         M  + IE+ EEM E
Sbjct: 706 VSEAESIFNALREKGTCDVISFATMMYLYKGMG---------MLDEAIEVAEEMRE 752


>AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10786948-10789053 REVERSE
           LENGTH=701
          Length = 701

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 120/264 (45%), Gaps = 5/264 (1%)

Query: 124 ESAESYFQNLSDSDKTE-KVHG--ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNN 179
           E A   F  L  SD  +  VH   +++  Y     ++++     +MK+ G    ++ Y  
Sbjct: 339 EKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTT 398

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
           +++ + +     +  +++ +M ++G  P+I++Y   ++S   +S      +LL K  + G
Sbjct: 399 LINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCG 458

Query: 240 DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDM 299
            +  D +TY+ +     K    ++AL +  +     ++ D    N +I+ +    K K+ 
Sbjct: 459 -LEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKES 517

Query: 300 MRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIG 359
            RL++L            Y +M+ C  K GD++ A K     +  G   D      L+ G
Sbjct: 518 ERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISG 577

Query: 360 YSRKGLIEKAETMLRSMVDKGKTP 383
             +K ++++A  +  +M+D+G +P
Sbjct: 578 LCKKSMVDEACKLYEAMIDRGLSP 601



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 126/295 (42%), Gaps = 14/295 (4%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPL--HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
           GS+ ++   +++M   G+   +  H   I  L  R    +     L +++ D   P++ +
Sbjct: 301 GSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHT 360

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y   +  Y     L   E L  +++ +G +  +  TY+T+ N + KAG   +A   +   
Sbjct: 361 YTSMIGGYCKEDKLNRAEMLFSRMKEQG-LFPNVNTYTTLINGHCKAGSFGRAYELMNLM 419

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE---YITMLGCLVKL 328
            D+ +  +   YN  I    SL KK      ++L        L  +   Y  ++    K 
Sbjct: 420 GDEGFMPNIYTYNAAID---SLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQ 476

Query: 329 GDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSW 388
            D+ +A     +   +G   D ++ NIL+  + R+  ++++E + + +V  G  PT  ++
Sbjct: 477 NDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETY 536

Query: 389 SIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEE 443
           + + S +  + +++ A + F        +  G  P S    S++S +     ++E
Sbjct: 537 TSMISCYCKEGDIDLALKYFHN-----MKRHGCVPDSFTYGSLISGLCKKSMVDE 586


>AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29068620-29069828 REVERSE
           LENGTH=402
          Length = 402

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 8/236 (3%)

Query: 172 VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKL 231
           ++P  YNN++S   R    E++  +   M ED VSPDI+++   +N Y     +   ++ 
Sbjct: 118 LTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQY 177

Query: 232 LEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYA 291
           +  +   G    D+ TY++    + +    D A    K+       R+ V+Y  +I  Y 
Sbjct: 178 VTWLIQAG-CDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLI--YG 234

Query: 292 SLGKKK---DMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTY 348
               KK    +  L K++ DNC   + R Y  ++  L   G   EA  L  Q   SG   
Sbjct: 235 LFEAKKIDEALSLLVKMKDDNCCPNV-RTYTVLIDALCGSGQKSEAMNLFKQMSESGIKP 293

Query: 349 DFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           D  +  +L+  +     +++A  +L  M++ G  P   +++ +  G   K+N+ KA
Sbjct: 294 DDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKG-FCKKNVHKA 348


>AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15510901-15512691 FORWARD
           LENGTH=596
          Length = 596

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 119/290 (41%), Gaps = 46/290 (15%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKED 203
            LLN  V     D      +KM  +G V+ +H YN ++   +++   EK   +L+ M+E 
Sbjct: 173 VLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEK 232

Query: 204 GVSPDIFSYRICLNSY-------------------GARSDLENMEKLLEKIETEG----- 239
           GV PDIF+Y   ++ Y                   G   ++      +     EG     
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREA 292

Query: 240 ---------DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
                    D+  + +TY+T+ + Y +    D+AL   +  E + +    V YN ++   
Sbjct: 293 TRLFREIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKL 352

Query: 291 ASLGKKKDMMRLW------KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELS 344
              G+ ++  RL       K++ DN          T++    K+ D+  A K+  +   S
Sbjct: 353 CEDGRIREANRLLTEMSGKKIEPDNITCN------TLINAYCKIEDMVSAVKVKKKMIES 406

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASG 394
           G   D      L+ G+ +   +E A+  L SM++KG +P   ++S +  G
Sbjct: 407 GLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDG 456


>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
           chr4:15403020-15406358 FORWARD LENGTH=1112
          Length = 1112

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 120/264 (45%), Gaps = 4/264 (1%)

Query: 154 GSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           G + ++   ++KM++ GFV +   YN ++ L  ++    +  +V   M  +G  P + +Y
Sbjct: 167 GGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTY 226

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCE 272
              +   G R D++++  LL+++ET G +  +  T++       +AG  ++A   LK+ +
Sbjct: 227 SSLMVGLGKRRDIDSVMGLLKEMETLG-LKPNVYTFTICIRVLGRAGKINEAYEILKRMD 285

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLE 332
           D+    D V Y  +I    +  K      +++  K    K     YIT+L       DL+
Sbjct: 286 DEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLD 345

Query: 333 EAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIA 392
             ++   + E  G+  D     IL+    + G   +A   L  M D+G  P  ++++ + 
Sbjct: 346 SVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI 405

Query: 393 SGHVAKENMEKAFQCFK--EALAV 414
            G +    ++ A + F   E+L V
Sbjct: 406 CGLLRVHRLDDALELFGNMESLGV 429



 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 16/255 (6%)

Query: 143  HGALLNCYVMAGSVDKSLS-QMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAM 199
            H  +++  V AG+VD +L      M D  F SP    Y  ++   +++ +  +   +   
Sbjct: 858  HNIVISGLVKAGNVDDALDLYYDLMSDRDF-SPTACTYGPLIDGLSKSGRLYEAKQLFEG 916

Query: 200  MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
            M + G  P+   Y I +N +G   + +    L +++  EG +  D  TYS + +     G
Sbjct: 917  MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSVLVDCLCMVG 975

Query: 260  LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
              D+ L Y K+ ++     D V YN +I+      + ++ + L+   K +  + +  +  
Sbjct: 976  RVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTS--RGITPDLY 1033

Query: 320  TMLGCLVKLGD---LEEAEKLLGQWELSG---NTYDFKVPNILLIGYSRKGLIEKAETML 373
            T    ++ LG    +EEA K+  + + +G   N + F   N L+ GYS  G  E A  + 
Sbjct: 1034 TYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTF---NALIRGYSLSGKPEHAYAVY 1090

Query: 374  RSMVDKGKTPTPNSW 388
            ++MV  G +P   ++
Sbjct: 1091 QTMVTGGFSPNTGTY 1105



 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 118/298 (39%), Gaps = 43/298 (14%)

Query: 167  KDMGFVSPL-HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDL 225
            KD+G    L  YN ++      +  E   DV   +K  G  PD+ +Y   L++YG    +
Sbjct: 777  KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKI 836

Query: 226  ENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKAL-IYLKKCEDKAYKRDAVAYN 284
            + + +L +++ T  +   + +T++ V +  VKAG  D AL +Y     D+ +   A  Y 
Sbjct: 837  DELFELYKEMSTH-ECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYG 895

Query: 285  HMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELS 344
             +I                                     L K G L EA++L       
Sbjct: 896  PLIDG-----------------------------------LSKSGRLYEAKQLFEGMLDY 920

Query: 345  GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
            G   +  + NIL+ G+ + G  + A  + + MV +G  P   ++S++         +++ 
Sbjct: 921  GCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 980

Query: 405  FQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMY 462
               FKE      +  G  P     + I++ +  +  +EE     N +K    +  D+Y
Sbjct: 981  LHYFKE-----LKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLY 1033



 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 156/388 (40%), Gaps = 54/388 (13%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRV---RGLESAESYFQNL 133
           ++  L T ++   A +V E M +    P    DR   + L+ R    R L+S + ++  +
Sbjct: 299 LIDALCTARKLDCAKEVFEKMKTGRHKP----DRVTYITLLDRFSDNRDLDSVKQFWSEM 354

Query: 134 SDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQH 190
                   V     L++    AG+  ++   +  M+D G +  LH YN ++    R  + 
Sbjct: 355 EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRL 414

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYST 250
           +   ++   M+  GV P  ++Y + ++ YG                              
Sbjct: 415 DDALELFGNMESLGVKPTAYTYIVFIDYYG------------------------------ 444

Query: 251 VANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNC 310
                 K+G    AL   +K + K    + VA N  +   A  G+ ++  +++   KD  
Sbjct: 445 ------KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 498

Query: 311 KKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
               +  Y  M+ C  K+G+++EA KLL +   +G   D  V N L+    +   +++A 
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAW 558

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
            M   M +    PT  +++ + +G      +++A + F+  +      KG  P +   ++
Sbjct: 559 KMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMV-----QKGCPPNTITFNT 613

Query: 431 ILSWVTDNRDIEEVEDFVNSLKKVMSMN 458
           +   +  N   +EV   +  L K+M M 
Sbjct: 614 LFDCLCKN---DEVTLALKMLFKMMDMG 638



 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 152/375 (40%), Gaps = 10/375 (2%)

Query: 64  QEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGL 123
           ++GH         +V  L     F +A    + M  +G+ P L     +   L+ RV  L
Sbjct: 356 KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLL-RVHRL 414

Query: 124 ESAESYFQNLSD--SDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIM 181
           + A   F N+       T   +   ++ Y  +G    +L   +KMK  G    +   N  
Sbjct: 415 DDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACN-A 473

Query: 182 SLYT--RTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
           SLY+  +  +  +   +   +K+ G+ PD  +Y + +  Y    +++   KLL ++   G
Sbjct: 474 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG 533

Query: 240 DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDM 299
               D +  +++ N   KA   D+A     + ++   K   V YN +++     GK ++ 
Sbjct: 534 -CEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEA 592

Query: 300 MRLWK-LQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLI 358
           + L++ + +  C       + T+  CL K  ++  A K+L +    G   D    N ++ 
Sbjct: 593 IELFEGMVQKGCPPN-TITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIF 651

Query: 359 GYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAEN 418
           G  + G +++A      M  K   P   +   +  G V    +E A++     L   A+ 
Sbjct: 652 GLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQ 710

Query: 419 KGWRPKSDVVSSILS 433
                  D++ SIL+
Sbjct: 711 PANLFWEDLIGSILA 725


>AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr2:17403861-17406648
           REVERSE LENGTH=683
          Length = 683

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL-HYNNIMSLYTRTEQHEKVPDVLAMMK 201
           + AL+  Y + G    +LS +  +K  G +  +  Y  +++ Y R+ Q  K  +V  MM+
Sbjct: 226 YNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMR 285

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           ++   P++ +Y   +++YG+   L    ++  ++E +G I  + ++  T+     ++  K
Sbjct: 286 KERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDG-IKPNVVSVCTLLAACSRSKKK 344

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
                 L   + +    +  AYN  I  Y +  + +  + L++  +    K  +  +  +
Sbjct: 345 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 404

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +    ++    EA   L + E        +V + +L  YS++G + +AE++   M   G 
Sbjct: 405 ISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGC 464

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
            P   +++ +   + A E   KA + F E      E  G  P S   S+++
Sbjct: 465 EPDVIAYTSMLHAYNASEKWGKACELFLE-----MEANGIEPDSIACSALM 510


>AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23208247-23209893 REVERSE
           LENGTH=548
          Length = 548

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 157/375 (41%), Gaps = 51/375 (13%)

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL-HYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           G+L+N +     V  ++S + KM ++G+   +  YN I+    +T++     D    ++ 
Sbjct: 159 GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER 218

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG--L 260
            G+ P++ +Y   +N     S   +  +LL  +  +  I  + +TYS + + +VK G  L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALLDAFVKNGKVL 277

Query: 261 KDKAL----------------------IYLKKCEDKAYK-----------RDAVAYNHMI 287
           + K L                      + L    D+A +            D V+YN +I
Sbjct: 278 EAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLI 337

Query: 288 SHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
           + +    + +D M+L++             Y T++    + GD+++A++   Q +  G +
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS 397

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D    NILL G    G +EKA  +   M  +       +++ +  G      +E+A+  
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 457

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLS--- 464
           F  +L++    KG +P     ++++S +     + EVE     +K+   M  D  LS   
Sbjct: 458 FC-SLSL----KGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGD 512

Query: 465 ------LIKLYVRCG 473
                 LIK  + CG
Sbjct: 513 ITLSAELIKKMLSCG 527



 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 8/175 (4%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVS-PLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  L+N +  A  V+  +   ++M   G VS  + YN ++  + +    +K  +  + M 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
             G+SPDI++Y I L       +LE    + E ++   ++ +D +TY+TV     K G  
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVTYTTVIRGMCKTGKV 451

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK------LQKDNC 310
           ++A         K  K D V Y  M+S   + G   ++  L+       L K++C
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDC 506



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/336 (19%), Positives = 144/336 (42%), Gaps = 18/336 (5%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAM---MKE 202
           ++NC+     V  +LS + KM  +G+  P     I SL     +  +V D +++   M E
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGY-EPDRV-TIGSLVNGFCRRNRVSDAVSLVDKMVE 183

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G  PDI +Y   ++S      + +     ++IE +G I  + +TY+ + N    +    
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG-IRPNVVTYTALVNGLCNSSRWS 242

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT-- 320
            A   L     K    + + Y+ ++  +   GK   ++   +L ++  +  ++ + +T  
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGK---VLEAKELFEEMVRMSIDPDIVTYS 299

Query: 321 -MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
            ++  L     ++EA ++       G   D    N L+ G+ +   +E    + R M  +
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
           G      +++ +  G     +++KA + F +      +  G  P     + +L  + DN 
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ-----MDFFGISPDIWTYNILLGGLCDNG 414

Query: 440 DIEE-VEDFVNSLKKVMSMNRDMYLSLIKLYVRCGR 474
           ++E+ +  F +  K+ M ++   Y ++I+   + G+
Sbjct: 415 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK 450



 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/321 (18%), Positives = 125/321 (38%), Gaps = 41/321 (12%)

Query: 166 MKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDL 225
           +K   F S + +N ++S   + ++++ V  +   M+  G+  D++++ I +N +     +
Sbjct: 77  VKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQV 136

Query: 226 ENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNH 285
                +L K+   G    D +T  ++ N + +      A+  + K  +  YK D VAYN 
Sbjct: 137 SLALSILGKMLKLG-YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195

Query: 286 MISHYASLGKKKDMMRLWK--------------------------------LQKDNCKKQ 313
           +I       +  D    +K                                L  D  KK+
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 314 LNREYIT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
           +    IT   +L   VK G + EA++L  +        D    + L+ G      I++A 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
            M   MV KG      S++ + +G    + +E   + F+E        +G    +   ++
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFRE-----MSQRGLVSNTVTYNT 370

Query: 431 ILSWVTDNRDIEEVEDFVNSL 451
           ++       D+++ ++F + +
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQM 391


>AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:326136-327815 REVERSE
           LENGTH=559
          Length = 559

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 134/318 (42%), Gaps = 45/318 (14%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
            L++ Y  AG ++ ++S  ++M+ +   ++ + Y  ++  + +  + ++  ++ + M ED
Sbjct: 203 CLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVED 262

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG------------------------ 239
            V P+   Y   ++ +  R D +N  K L K+  +G                        
Sbjct: 263 RVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEA 322

Query: 240 ----------DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISH 289
                     D+  D + ++T+ N Y K+G    A+    K  ++ ++ D VA + MI  
Sbjct: 323 TEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDG 382

Query: 290 YASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYD 349
            A  G+  + +  + ++K N     +  Y  ++  L K GD  E E+L  +   +G   D
Sbjct: 383 IAKNGQLHEAIVYFCIEKAN-----DVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPD 437

Query: 350 FKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
             +    + G  ++G +  A  +   MV +G      +++ +  G  +K  M +A Q F 
Sbjct: 438 KFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFD 497

Query: 410 EALAVLAENKGWRPKSDV 427
           E L     N G  P S V
Sbjct: 498 EML-----NSGISPDSAV 510



 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 137/309 (44%), Gaps = 25/309 (8%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           +N+++S   +  Q +   D++  M   G  PD+ SY   ++ +    D+ +   +LE + 
Sbjct: 59  FNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLR 118

Query: 237 -TEGDIA-VDWMTYSTVANFYVKAGLKDKALIY----LKKCEDKAYKRDAVAYNHMISHY 290
            + G I   D ++++++ N + K  + D+  +Y    LK C       + V Y+  I  +
Sbjct: 119 ASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSP-----NVVTYSTWIDTF 173

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLV----KLGDLEEAEKLLGQWELSGN 346
              G+ +  ++ +   K   +  L+   +T   CL+    K GDLE A  L  +      
Sbjct: 174 CKSGELQLALKSFHSMK---RDALSPNVVT-FTCLIDGYCKAGDLEVAVSLYKEMRRVRM 229

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
           + +      L+ G+ +KG +++AE M   MV+    P    ++ I  G   + + + A +
Sbjct: 230 SLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMK 289

Query: 407 CFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSL 465
              + L     N+G R        I+S +  N  ++E  + V  ++K  +  +  ++ ++
Sbjct: 290 FLAKML-----NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTM 344

Query: 466 IKLYVRCGR 474
           +  Y + GR
Sbjct: 345 MNAYFKSGR 353


>AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3190594-3192414 REVERSE
           LENGTH=606
          Length = 606

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 8/271 (2%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKV---PDVLAM 199
            ++N     G ++K+   M+ MK  G  SP  + YN ++  Y +   + K+     VL  
Sbjct: 228 VVINALCKTGKMNKARDVMEDMKVYG-CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKE 286

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M E+ VSP++ ++ I ++ +    +L    K+ +++  + D+  + ++Y+++ N     G
Sbjct: 287 MVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEM-LDQDVKPNVISYNSLINGLCNGG 345

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
              +A+    K      + + + YN +I+ +      K+ + ++   K        R Y 
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYN 405

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
            ++    KLG +++   L  + E  G   D    N L+ G  R G IE A+ +   +  K
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK 465

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           G  P   ++ I+  G+  K    KA    KE
Sbjct: 466 G-LPDLVTFHILMEGYCRKGESRKAAMLLKE 495



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 127/278 (45%), Gaps = 16/278 (5%)

Query: 123 LESAESYFQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYN 178
           L  +   F+ + D D    V  + +L+N     G + +++S   KM   G V P  + YN
Sbjct: 312 LPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAG-VQPNLITYN 370

Query: 179 NIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETE 238
            +++ + + +  ++  D+   +K  G  P    Y + +++Y     +++   L E++E E
Sbjct: 371 ALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE 430

Query: 239 GDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK-KK 297
           G I  D  TY+ +     + G  + A     +   K    D V ++ ++  Y   G+ +K
Sbjct: 431 G-IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVTFHILMEGYCRKGESRK 488

Query: 298 DMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWE----LSGNTYDFKVP 353
             M L ++ K   K +     I M G   K G+L+ A  +  Q E    L  N   +   
Sbjct: 489 AAMLLKEMSKMGLKPRHLTYNIVMKG-YCKEGNLKAATNMRTQMEKERRLRMNVASY--- 544

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           N+LL GYS+KG +E A  +L  M++KG  P   ++ I+
Sbjct: 545 NVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582


>AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8947426-8949424 FORWARD
           LENGTH=574
          Length = 574

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 144/305 (47%), Gaps = 43/305 (14%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
           A++N +  +G+++ ++  + KMK++G   +   YN ++  Y    + E+  ++L +M E+
Sbjct: 120 AVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEE 179

Query: 204 G---VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG- 259
           G   V P+I ++ + + ++  +  +E   ++++K+E E  +  D +TY+T+A  YV+ G 
Sbjct: 180 GNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKME-ECGVRPDTVTYNTIATCYVQKGE 238

Query: 260 -------------LKDKA-----------------------LIYLKKCEDKAYKRDAVAY 283
                        +K+KA                       L ++++ ++   + + V +
Sbjct: 239 TVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVF 298

Query: 284 NHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWEL 343
           N +I+ +  +  +  +  +  L K+   K     Y T++      G +E+A ++  +   
Sbjct: 299 NSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVK 358

Query: 344 SGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEK 403
           +G   D    +IL  GY R    +KAE +L +++ + + P    ++ + SG  +  +M+ 
Sbjct: 359 AGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIVESR-PNVVIFTTVISGWCSNGSMDD 417

Query: 404 AFQCF 408
           A + F
Sbjct: 418 AMRVF 422



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/382 (19%), Positives = 160/382 (41%), Gaps = 53/382 (13%)

Query: 116 LIGRVRGLESAESYFQNLSDSDKTEKV--HGALLNCYVMA---GSVDKSLSQMQKMKDMG 170
           LI R R  E A++ F+ L+++     +  +  LL    +    GS+   +S++++     
Sbjct: 55  LIERGRPHE-AQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTK- 112

Query: 171 FVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
            +  + +N +++ ++ +   E     L  MKE G++P   +Y   +  YG     E   +
Sbjct: 113 -LDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSE 171

Query: 231 LLEKIETEG--DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHM-- 286
           LL+ +  EG  D+  +  T++ +   + K    ++A   +KK E+   + D V YN +  
Sbjct: 172 LLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231

Query: 287 -----------------------------------ISHYASLGKKKDMMRLWKLQKDNCK 311
                                              +  Y   G+ +D +R  +  K+   
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRV 291

Query: 312 KQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAET 371
           +     + +++   V++ D +  +++L   +      D    + ++  +S  G +EKA  
Sbjct: 292 EANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQ 351

Query: 372 MLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSI 431
           + + MV  G  P  +++SI+A G+V  +  +KA +   E L V +     RP   + +++
Sbjct: 352 VFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELL-ETLIVES-----RPNVVIFTTV 405

Query: 432 LSWVTDNRDIEEVEDFVNSLKK 453
           +S    N  +++     N + K
Sbjct: 406 ISGWCSNGSMDDAMRVFNKMCK 427


>AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:3911388-3913838 FORWARD LENGTH=816
          Length = 816

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 143/338 (42%), Gaps = 46/338 (13%)

Query: 130 FQNLSDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMK-DMGFVSPLHYNNIMSLYTR 186
           F N+ +SD   ++ ++G  +   V    V K L    +MK D  + S   YN ++    +
Sbjct: 167 FLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCK 226

Query: 187 TEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWM 246
            ++      +   M    + P + +Y   ++ Y    + E   K+ E+++ +  I    +
Sbjct: 227 GKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD-HIEPSLI 285

Query: 247 TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQ 306
           T++T+     KAG+ + A   LK+ +D  +  DA  ++ +   Y+S  K +  + +++  
Sbjct: 286 TFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETA 345

Query: 307 KDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKG-- 364
            D+  K        +L  L K G +E+AE++LG+    G   +  + N ++ GY RKG  
Sbjct: 346 VDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDL 405

Query: 365 ------------------------LI---------EKAETMLRSMVDKGKTPTPNSWSII 391
                                   LI         E AE  +  M  KG +P+  +++I+
Sbjct: 406 VGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNIL 465

Query: 392 ASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVS 429
             G+  K   +K F   KE      E+ G  P  +VVS
Sbjct: 466 IGGYGRKYEFDKCFDILKE-----MEDNGTMP--NVVS 496



 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 137/325 (42%), Gaps = 42/325 (12%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
            LL     AG V+ + + +++MKD+GFV     ++ +   Y+  E+ E    V     + 
Sbjct: 289 TLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDS 348

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           GV  + ++  I LN+      +E  E++L +   +G +  + + Y+T+ + Y + G    
Sbjct: 349 GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKG-LVPNEVIYNTMIDGYCRKGDLVG 407

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLG------KKKDMMRL--------------- 302
           A + ++  E +  K D +AYN +I  +  LG      K+ + M+L               
Sbjct: 408 ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIG 467

Query: 303 ---WKLQKDNCKKQLNR-----------EYITMLGCLVKLGDLEEAEKLLGQWELSGNTY 348
               K + D C   L              Y T++ CL K   L EA+ +    E  G + 
Sbjct: 468 GYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSP 527

Query: 349 DFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCF 408
             ++ N+L+ G   KG IE A    + M+ KG      +++ +  G      + +A    
Sbjct: 528 KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEA---- 583

Query: 409 KEALAVLAENKGWRPKSDVVSSILS 433
            E L +    KG +P     +S++S
Sbjct: 584 -EDLLLEISRKGLKPDVFTYNSLIS 607



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 150/364 (41%), Gaps = 57/364 (15%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL--HYNNIMSLYTRTEQHEKVPDVLAMM 200
           +  L+  +   G ++ +  ++ KMK  G VSP    YN ++  Y R  + +K  D+L  M
Sbjct: 427 YNCLIRRFCELGEMENAEKEVNKMKLKG-VSPSVETYNILIGGYGRKYEFDKCFDILKEM 485

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
           +++G  P++ SY   +N     S      KLLE                           
Sbjct: 486 EDNGTMPNVVSYGTLINCLCKGS------KLLE--------------------------- 512

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKK--QLNR-E 317
              A I  +  ED+        YN +I    S GK +D  R     K+  KK  +LN   
Sbjct: 513 ---AQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFR---FSKEMLKKGIELNLVT 566

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y T++  L   G L EAE LL +    G   D    N L+ GY   G +++   +   M 
Sbjct: 567 YNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMK 626

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTD 437
             G  PT  ++ ++ S    KE +E   + F E           +P   V + +L     
Sbjct: 627 RSGIKPTLKTYHLLIS-LCTKEGIELTERLFGEM--------SLKPDLLVYNGVLHCYAV 677

Query: 438 NRDIEEVEDFVNSL-KKVMSMNRDMYLSLIKLYVRCGR--EVDGVLESMKADNIELDEEM 494
           + D+E+  +    + +K + +++  Y SLI   ++ G+  EV  +++ M A  +E + + 
Sbjct: 678 HGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADT 737

Query: 495 EEIL 498
             I+
Sbjct: 738 YNII 741



 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 116/271 (42%), Gaps = 41/271 (15%)

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAM 199
           +++  L++     G ++ +    ++M   G  ++ + YN ++   + T +  +  D+L  
Sbjct: 530 RIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLE 589

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           +   G+ PD+F+Y   ++ YG   +++    L E+++  G I     TY  + +   K G
Sbjct: 590 ISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG-IKPTLKTYHLLISLCTKEG 648

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
           ++    ++     + + K D + YN ++  YA  G   DM + + LQK   +K +     
Sbjct: 649 IELTERLF----GEMSLKPDLLVYNGVLHCYAVHG---DMEKAFNLQKQMIEKSIG---- 697

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
                                  L   TY     N L++G  + G + +  +++  M  +
Sbjct: 698 -----------------------LDKTTY-----NSLILGQLKVGKLCEVRSLIDEMNAR 729

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
              P  ++++II  GH   ++   A+  ++E
Sbjct: 730 EMEPEADTYNIIVKGHCEVKDYMSAYVWYRE 760


>AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8347200-8349347 FORWARD
           LENGTH=715
          Length = 715

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 137/304 (45%), Gaps = 24/304 (7%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVS---PDIFSYRICLNSYGARSDLENMEKLLE 233
           YN I++ Y ++  +E   D L M++E G +   PD F+    L  +    D+   +++  
Sbjct: 210 YNTIIAGYAQSGMYE---DALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHG 266

Query: 234 KIETEGDIAVDWMTYSTVANFYVK-AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS 292
            +  +G I  D    S++ + Y K A ++D   ++      + Y RD +++N +++ Y  
Sbjct: 267 YVIRKG-IDSDVYIGSSLVDMYAKSARIEDSERVF-----SRLYCRDGISWNSLVAGYVQ 320

Query: 293 LGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
            G+  + +RL++       K     + +++     L  L   ++L G     G   +  +
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
            + L+  YS+ G I+ A    R + D+       SW+ I  GH    +  +A   F+E  
Sbjct: 381 ASALVDMYSKCGNIKAA----RKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE-- 434

Query: 413 AVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDM--YLSLIKLYV 470
               + +G +P      ++L+  +    ++E   + NS+ KV  +N+++  Y ++  L  
Sbjct: 435 ---MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 471 RCGR 474
           R G+
Sbjct: 492 RAGK 495


>AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23412854-23414746 FORWARD
           LENGTH=630
          Length = 630

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 159/376 (42%), Gaps = 19/376 (5%)

Query: 131 QNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL-HYNNIMSLYTRTEQ 189
           QNL  S      +  L+NC+     +  +L+ + KM  +G+   +   N++++ +    +
Sbjct: 108 QNLGISHNL-YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNR 166

Query: 190 HEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYS 249
                 ++  M E G  PD F++   ++     +       L++++  +G    D +TY 
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG-CQPDLVTYG 225

Query: 250 TVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDN 309
            V N   K G  D AL  LKK E    +   V YN +I    +     D + L+    + 
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285

Query: 310 CKKQLNREYITMLGCLVKLGDLEEAEKLLG---QWELSGNTYDFKVPNILLIGYSRKGLI 366
             +     Y +++ CL   G   +A +LL    + +++ N   F     L+  + ++G +
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA---LIDAFVKEGKL 342

Query: 367 EKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSD 426
            +AE +   M+ +   P   ++S + +G    + +++A   F+     L  +K   P   
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-----LMISKDCFPNVV 397

Query: 427 VVSSILSWVTDNRDIEE-VEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDG---VLES 482
             ++++      + ++E +E F    ++ +  N   Y +LI  + +  RE D    V + 
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ-ARECDNAQIVFKQ 456

Query: 483 MKADNIELDEEMEEIL 498
           M +D +  D     IL
Sbjct: 457 MVSDGVLPDIMTYSIL 472



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/256 (17%), Positives = 107/256 (41%), Gaps = 39/256 (15%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKM--KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
           + +L+N + M   +D++    + M  KD  F + + YN ++  + + ++ ++  ++   M
Sbjct: 364 YSSLINGFCMHDRLDEAKHMFELMISKDC-FPNVVTYNTLIKGFCKAKRVDEGMELFREM 422

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
            + G+  +  +Y   ++ +    + +N + + +++ ++G +  D MTYS + +     G 
Sbjct: 423 SQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG-VLPDIMTYSILLDGLCNNGK 481

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
            + AL+  +  +    + D   YN MI                                 
Sbjct: 482 VETALVVFEYLQRSKMEPDIYTYNIMIEG------------------------------- 510

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
               + K G +E+   L     L G   +      ++ G+ RKGL E+A+ + R M ++G
Sbjct: 511 ----MCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566

Query: 381 KTPTPNSWSIIASGHV 396
             P   +++ +   H+
Sbjct: 567 PLPDSGTYNTLIRAHL 582



 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 159/397 (40%), Gaps = 68/397 (17%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMM 200
           +G ++N     G +D +LS ++KM + G + P  + YN I+      +      ++   M
Sbjct: 224 YGIVVNGLCKRGDIDLALSLLKKM-EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282

Query: 201 KEDGVSPDIFSYRI---CLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
              G+ P++ +Y     CL +YG  SD     +LL  +  E  I  + +T+S + + +VK
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSD---ASRLLSDM-IERKINPNVVTFSALIDAFVK 338

Query: 258 AGLKDKALIYLKKCEDKAYKR----DAVAYNHMISHYA---SLGKKKDMMRLW------- 303
            G     L+  +K  D+  KR    D   Y+ +I+ +     L + K M  L        
Sbjct: 339 EG----KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394

Query: 304 ------KLQKDNCKK-------QLNRE------------YITMLGCLVKLGDLEEAEKLL 338
                  L K  CK        +L RE            Y T++    +  + + A+ + 
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454

Query: 339 GQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAK 398
            Q    G   D    +ILL G    G +E A  +   +      P   +++I+  G    
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA 514

Query: 399 ENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSM- 457
             +E  +  F  +L++    KG +P     ++++S        EE +     +K+   + 
Sbjct: 515 GKVEDGWDLFC-SLSL----KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP 569

Query: 458 NRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEM 494
           +   Y +LI+ ++R G          KA + EL  EM
Sbjct: 570 DSGTYNTLIRAHLRDGD---------KAASAELIREM 597


>AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28086800-28089367 FORWARD
           LENGTH=855
          Length = 855

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 134/310 (43%), Gaps = 9/310 (2%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYR 213
           G ++K L +M  ++D    + + YN ++  Y R    ++  +V   M+E G  PD  +Y 
Sbjct: 376 GEINKLLDEM--VRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYC 433

Query: 214 ICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED 273
             ++ +     L+    + ++++ E  ++ D  TYS + N   KAG    A     +   
Sbjct: 434 TLIDIHAKAGFLDIAMDMYQRMQ-EAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVG 492

Query: 274 KAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
           +    + V +N MI+ +A     +  ++L++  ++   +     Y  ++  L   G LEE
Sbjct: 493 QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEE 552

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           AE +  + +      D  V  +L+  + + G ++KA    ++M+  G  P   + + + S
Sbjct: 553 AEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLS 612

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKK 453
             +    M +A+   +  LA+     G  P     + +LS  TD R   ++  F   L  
Sbjct: 613 TFLRVHRMSEAYNLLQSMLAL-----GLHPSLQTYTLLLSCCTDARSNFDM-GFCGQLMA 666

Query: 454 VMSMNRDMYL 463
           V      M+L
Sbjct: 667 VSGHPAHMFL 676



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 127/305 (41%), Gaps = 12/305 (3%)

Query: 170 GFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENM 228
           GF    H Y  ++    R +Q  ++  +L  M  DG  P+  +Y   ++SYG  + L+  
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413

Query: 229 EKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
             +  +++ E     D +TY T+ + + KAG  D A+   ++ ++     D   Y+ +I+
Sbjct: 414 MNVFNQMQ-EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIIN 472

Query: 289 HYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
                G      RL+ ++    C   L   +  M+    K  + E A KL    + +G  
Sbjct: 473 CLGKAGHLPAAHRLFCEMVGQGCTPNL-VTFNIMIALHAKARNYETALKLYRDMQNAGFQ 531

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D    +I++      G +E+AE +   M  K   P    + ++        N++KA+Q 
Sbjct: 532 PDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQW 591

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIK 467
           ++  L       G RP     +S+LS       +  + +  N L+ ++++     L    
Sbjct: 592 YQAML-----QAGLRPNVPTCNSLLSTFL---RVHRMSEAYNLLQSMLALGLHPSLQTYT 643

Query: 468 LYVRC 472
           L + C
Sbjct: 644 LLLSC 648


>AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:7966066-7967925 REVERSE
           LENGTH=619
          Length = 619

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 132/298 (44%), Gaps = 11/298 (3%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           AL++ +V  G + ++     +M   G ++P  + YN+++  + +     +   +  +M  
Sbjct: 320 ALIDVFVKEGKLLEAKELYNEMITRG-IAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G  PDI +Y I +NSY     +++  +L  +I ++G I  + +TY+T+   + ++G  +
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP-NTITYNTLVLGFCQSGKLN 437

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITM 321
            A    ++   +      V Y  ++      G+    + ++ K+QK      +    I +
Sbjct: 438 AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
            G +     +++A  L       G   D    N+++ G  +KG + +A+ + R M + G 
Sbjct: 498 HG-MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
           TP   +++I+   H+    +  + +  +E         G+   S  +  ++  ++D R
Sbjct: 557 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVC-----GFSADSSTIKMVIDMLSDRR 609



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 19/288 (6%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDM----GFVSPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
            L+N + + G V ++++ + +M +M      V+     N + L  R  +   + D    M
Sbjct: 145 TLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLID---RM 201

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
            E G  PD  +Y   LN      +      L  K+E E +I    + YS V +   K G 
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVIDSLCKDGS 260

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
            D AL    + E K  K D V Y+ +I    + GK  D     K+ ++   + +  + +T
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDG---AKMLREMIGRNIIPDVVT 317

Query: 321 ---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
              ++   VK G L EA++L  +    G   D    N L+ G+ ++  + +A  M   MV
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKS 425
            KG  P   ++SI+ + +   + ++   + F+E       +KG  P +
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE-----ISSKGLIPNT 420



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 119/295 (40%), Gaps = 41/295 (13%)

Query: 173 SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSY------------- 219
           +P+ +N + S   RT+Q++ V      M+ +G+  D+++  I +N Y             
Sbjct: 69  TPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVL 128

Query: 220 ------GARSDLENMEKLLEKIETEGDIA---------------VDWMTYSTVANFYVKA 258
                 G   D      L+     EG ++                D +T ST+ N     
Sbjct: 129 GRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK 188

Query: 259 GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNRE 317
           G   +AL+ + +  +  ++ D V Y  +++     G     + L+ K+++ N K  +  +
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV-VQ 247

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y  ++  L K G  ++A  L  + E+ G   D    + L+ G    G  +    MLR M+
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
            +   P   ++S +    V +  + +A + + E +      +G  P +   +S++
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT-----RGIAPDTITYNSLI 357


>AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13930379-13932493 FORWARD
           LENGTH=704
          Length = 704

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 125/288 (43%), Gaps = 28/288 (9%)

Query: 119 RVRGLESAESYFQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH 176
           R R  E A S+++ + ++D          LL CYV       +   +  M   GF   ++
Sbjct: 84  RSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVY 143

Query: 177 YNNIM-SLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKI 235
            +NI+     R  +  K   +L  M+ + + PD+FSY   +  +    +LE   +L  ++
Sbjct: 144 NHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEM 203

Query: 236 ETEGDIAVDW--MTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
           +  G     W  +T+  + + + KAG  D+A+ +LK+ +    + D V Y  +I  +   
Sbjct: 204 KGSG---CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDC 260

Query: 294 GKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV- 352
           G+      L+    +         Y T++    KLG L+EA ++          ++F + 
Sbjct: 261 GELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI----------FEFMIE 310

Query: 353 ----PNI-----LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
               PN+     L+ G    G  ++A  +L  M++K + P   +++II
Sbjct: 311 RGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNII 358



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 125/271 (46%), Gaps = 6/271 (2%)

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKE 202
           G L++ +  AG +D+++  +++MK MG  + L  Y +++  +    + ++   +   + E
Sbjct: 216 GILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLE 275

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G SP   +Y   +  +     L+   ++ E +   G +  +  TY+ + +     G   
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG-VRPNVYTYTGLIDGLCGVGKTK 334

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITML 322
           +AL  L    +K  + +AV YN +I+     G   D + + +L K    +  N  Y  +L
Sbjct: 335 EALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394

Query: 323 GCLVKLGDLEEAEKLLGQWELSGNTY---DFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           G L   GDL+EA KLL    L  ++Y   D    N L+ G  ++  + +A  +   +V+K
Sbjct: 395 GGLCAKGDLDEASKLL-YLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
                  + +I+ +  +   ++ KA + +K+
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQ 484



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 106/238 (44%), Gaps = 19/238 (7%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIG---RVRGLESAESYFQNL 133
           ++  L    R  QAL + + +  K    +  GDR     L+    +   +  A   ++ +
Sbjct: 430 LIHGLCKENRLHQALDIYDLLVEK----LGAGDRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 134 SDSD--KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-----YNNIMSLYTR 186
           SDS   +    + A+++ +   G ++ +   + KM+    VS L      YN ++S   +
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMR----VSELQPSVFDYNCLLSSLCK 541

Query: 187 TEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWM 246
               ++   +   M+ D   PD+ S+ I ++      D+++ E LL  +   G ++ D  
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG-LSPDLF 600

Query: 247 TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK 304
           TYS + N ++K G  D+A+ +  K  D  ++ DA   + ++ +  S G+   +  L K
Sbjct: 601 TYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVK 658


>AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:18395294-18397393
           FORWARD LENGTH=510
          Length = 510

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 7/270 (2%)

Query: 119 RVRGLESAESYFQNLSDSDKTEK---VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP- 174
           + + LE    Y   +   ++ +     +  LL  +  +G VD+ ++ + K  DM  VSP 
Sbjct: 184 KAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQ-VNALFKDLDMSPVSPD 242

Query: 175 -LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
              +N +M  Y +    +++  VL  M+ +   PDI ++ + ++SYG + + E ME+  +
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
            +    +      T++++   Y KA + DKA    KK  D  Y    + Y  MI  Y   
Sbjct: 303 SLMRSKEKPT-LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYC 361

Query: 294 GKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
           G       +++   ++ +         ML    + G   EA+KL           D    
Sbjct: 362 GSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTY 421

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
             L   Y++  + E+ + +++ M   G  P
Sbjct: 422 KFLYKAYTKADMKEQVQILMKKMEKDGIVP 451


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 146/338 (43%), Gaps = 18/338 (5%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAM--- 199
           +   +NC+     +  +L+ + KM  +G+   +    + SL       +++ D +A+   
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIV--TLSSLLNGYCHSKRISDAVALVDQ 178

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M E G  PD F++   ++     +       L++++   G    D +TY TV N   K G
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTVVNGLCKRG 237

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
             D AL  L K E    K + V +N +I         +  + L+   +    +     Y 
Sbjct: 238 DIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYN 297

Query: 320 TMLGCLVKLGDLEEAEKLLGQW---ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSM 376
           +++ CL   G   +A +LL      +++ N   F   N L+  + ++G + +AE +   M
Sbjct: 298 SLINCLCNYGRWSDASRLLSNMLEKKINPNVVTF---NALIDAFFKEGKLVEAEKLHEEM 354

Query: 377 VDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVT 436
           + +   P   +++++ +G      +++A Q FK  ++     K   P     +++++   
Sbjct: 355 IQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS-----KDCLPNIQTYNTLINGFC 409

Query: 437 DNRDIEE-VEDFVNSLKKVMSMNRDMYLSLIKLYVRCG 473
             + +E+ VE F    ++ +  N   Y ++I+ + + G
Sbjct: 410 KCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAG 447



 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/267 (19%), Positives = 118/267 (44%), Gaps = 13/267 (4%)

Query: 175 LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEK 234
           + YN +++ +    + ++   +   M      P+I +Y   +N +     +E+  +L  +
Sbjct: 364 ITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFRE 423

Query: 235 IETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG 294
           +   G +  + +TY+T+   + +AG  D A +  K+        D + Y+ ++    S G
Sbjct: 424 MSQRGLVG-NTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYG 482

Query: 295 KKKDMMRLWK-LQKDNCKKQLN-REYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
           K    + ++K LQK   + +LN   Y TM+  + K G + EA  L     +  +   +  
Sbjct: 483 KLDTALVIFKYLQKS--EMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTY-- 538

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
            N ++ G   K L+++A+ + R M + G  P   +++ +   ++   +   + +  KE  
Sbjct: 539 -NTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKE-- 595

Query: 413 AVLAENKGWRPKSDVVSSILSWVTDNR 439
                + G+   +  +S + + + D R
Sbjct: 596 ---MRSSGFVGDASTISLVTNMLHDGR 619



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 3/225 (1%)

Query: 166 MKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDL 225
           +K   F S + +N ++S   +  + E V  +   M+  G+S D+++Y I +N +  RS L
Sbjct: 75  VKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQL 134

Query: 226 ENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNH 285
                +L K+   G    D +T S++ N Y  +     A+  + +  +  YK D   +  
Sbjct: 135 SLALAVLAKMMKLG-YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTT 193

Query: 286 MISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELS 344
           +I       K  + + L  ++ +  C+  L   Y T++  L K GD++ A  LL + E +
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDL-VTYGTVVNGLCKRGDIDLALNLLNKMEAA 252

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWS 389
               +  + N ++    +   +E A  +   M  KG  P   +++
Sbjct: 253 RIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYN 297


>AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:25723247-25725439 REVERSE
           LENGTH=730
          Length = 730

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/417 (19%), Positives = 169/417 (40%), Gaps = 50/417 (11%)

Query: 58  VLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCP--ILPGDRAVQLE 115
           +LE     G     +    ++  L    R  +A ++   M  +G  P  I  G     L 
Sbjct: 274 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333

Query: 116 LIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP- 174
            IGRV   ++A+  F  +   +    +   L++ +V  G +D + + +  M     + P 
Sbjct: 334 KIGRV---DAAKDLFYRIPKPEIV--IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD 388

Query: 175 -LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
              YN+++  Y +        +VL  M+  G  P+++SY I ++ +     ++    +L 
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
           ++  +G +  + + ++ + + + K     +A+   ++   K  K D   +N +IS    +
Sbjct: 449 EMSADG-LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 507

Query: 294 GKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGN-----TY 348
            + K  + L +             Y T++   ++ G+++EA KL+ +    G+     TY
Sbjct: 508 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITY 567

Query: 349 -------------------------DFKVP-----NILLIGYSRKGLIEKAETMLRSMVD 378
                                    D   P     NIL+ G  R G++E+A    + MV 
Sbjct: 568 NSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVL 627

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWV 435
           +G TP   +++ + +G      +E     F++  A     +G  P +   ++++SW+
Sbjct: 628 RGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQA-----EGIPPDTVTFNTLMSWL 679


>AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22180231-22181652 REVERSE
           LENGTH=473
          Length = 473

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 123/302 (40%), Gaps = 42/302 (13%)

Query: 153 AGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
           AG   +++ Q  K K   +    H YN I++     +Q++ +  V   M EDG SPD+ +
Sbjct: 197 AGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLT 256

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y I L +      ++  ++L +++  +G  + D  TY+ + +   K      AL  L   
Sbjct: 257 YNILLWTNYRLGKMDRFDRLFDEMARDG-FSPDSYTYNILLHILGKGNKPLAALTTL--- 312

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDL 331
                       NHM      +G    ++                 Y T++  L + G+L
Sbjct: 313 ------------NHM----KEVGIDPSVL----------------HYTTLIDGLSRAGNL 340

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           E  +  L +   +G   D     +++ GY   G ++KA+ M R M  KG+ P   +++ +
Sbjct: 341 EACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSM 400

Query: 392 ASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
             G        +A    KE      E++G  P   V S+++S++     + E    +  +
Sbjct: 401 IRGLCMAGEFREACWLLKE-----MESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREM 455

Query: 452 KK 453
            K
Sbjct: 456 VK 457


>AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:8017771-8019459 REVERSE
           LENGTH=562
          Length = 562

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 15/292 (5%)

Query: 122 GLESAESYFQNLSDSDKTE-KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL-HYNN 179
            +E A   F  L D+ K + +    L++ +  A   D + + M  MK   F   +  Y +
Sbjct: 254 SIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTS 313

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG 239
            +  Y +     +V ++L  M+E+G +P++ +Y I ++S G    +     + EK++ +G
Sbjct: 314 FVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDG 373

Query: 240 DIAVDWMTYSTVANFYVKAG-LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKD 298
            +  D   YS++ +   K G  KD A I+ +   ++  +RD + YN MIS  A+L   +D
Sbjct: 374 CVP-DAKFYSSLIHILSKTGRFKDAAEIF-EDMTNQGVRRDVLVYNTMIS--AALHHSRD 429

Query: 299 MMRLWKLQK------DNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKV 352
            M L  L++      ++C   +   Y  +L        ++    LL     +  + D   
Sbjct: 430 EMALRLLKRMEDEEGESCSPNV-ETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVST 488

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
             +L+ G    G +E+A       V KG  P  ++  ++    + K+NM +A
Sbjct: 489 YILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVD-ELEKKNMAEA 539


>AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:18395294-18397578
           FORWARD LENGTH=563
          Length = 563

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 114/279 (40%), Gaps = 7/279 (2%)

Query: 111 AVQLELIGRVRGLESAESYFQNLSDSDKTEK---VHGALLNCYVMAGSVDKSLSQMQKMK 167
              L    + + LE    Y   +   ++ +     +  LL  +  +G VD+ ++ + K  
Sbjct: 176 TAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQ-VNALFKDL 234

Query: 168 DMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDL 225
           DM  VSP    +N +M  Y +    +++  VL  M+ +   PDI ++ + ++SYG + + 
Sbjct: 235 DMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEF 294

Query: 226 ENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNH 285
           E ME+  + +    +      T++++   Y KA + DKA    KK  D  Y    + Y  
Sbjct: 295 EKMEQTFKSLMRSKEKPT-LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYEC 353

Query: 286 MISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSG 345
           MI  Y   G       +++   ++ +         ML    + G   EA+KL        
Sbjct: 354 MIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFR 413

Query: 346 NTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPT 384
              D      L   Y++  + E+ + +++ M   G  P 
Sbjct: 414 VHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPN 452


>AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6819926-6822610 REVERSE
           LENGTH=894
          Length = 894

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 124/272 (45%), Gaps = 14/272 (5%)

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
           +V  ++L  Y   G +D +    ++M++   ++   +N+++  Y +  +HE+  +++  M
Sbjct: 217 RVSNSILAVYAKCGELDFATKFFRRMRERDVIA---WNSVLLAYCQNGKHEEAVELVKEM 273

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
           +++G+SP + ++ I +  Y      +    L++K+ET G I  D  T++ + +  +  G+
Sbjct: 274 EKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFG-ITADVFTWTAMISGLIHNGM 332

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI- 319
           + +AL   +K        +AV     +S  + L   K + +  ++     K     + + 
Sbjct: 333 RYQALDMFRKMFLAGVVPNAVTIMSAVSACSCL---KVINQGSEVHSIAVKMGFIDDVLV 389

Query: 320 --TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
             +++    K G LE+A K+      S    D    N ++ GY + G   KA  +   M 
Sbjct: 390 GNSLVDMYSKCGKLEDARKVFD----SVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQ 445

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
           D    P   +W+ + SG++   +  +A   F+
Sbjct: 446 DANLRPNIITWNTMISGYIKNGDEGEAMDLFQ 477



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 143/351 (40%), Gaps = 53/351 (15%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           V   LL+ Y   G +  +      M++    +   ++ ++  Y+R  +  +V  +  +M 
Sbjct: 117 VETKLLSMYAKCGCIADARKVFDSMRERNLFT---WSAMIGAYSRENRWREVAKLFRLMM 173

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           +DGV PD F +   L       D+E   K++  +  +  ++      +++   Y K G  
Sbjct: 174 KDGVLPDDFLFPKILQGCANCGDVE-AGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGEL 232

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
           D A  + ++  +    RD +A+N ++  Y   GK                          
Sbjct: 233 DFATKFFRRMRE----RDVIAWNSVLLAYCQNGKH------------------------- 263

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
                     EEA +L+ + E  G +      NIL+ GY++ G  + A  +++ M   G 
Sbjct: 264 ----------EEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGI 313

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
           T    +W+ + SG +      +A   F++         G  P +  + S +S  +  + I
Sbjct: 314 TADVFTWTAMISGLIHNGMRYQALDMFRKMFLA-----GVVPNAVTIMSAVSACSCLKVI 368

Query: 442 EEVEDFVNSLKKVMSMNRDMYL--SLIKLYVRCGREVDG--VLESMKADNI 488
            +  + V+S+   M    D+ +  SL+ +Y +CG+  D   V +S+K  ++
Sbjct: 369 NQGSE-VHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDV 418



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 116/272 (42%), Gaps = 17/272 (6%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           V  +L++ Y   G ++ +      +K+    +   +N++++ Y +     K  ++   M+
Sbjct: 389 VGNSLVDMYSKCGKLEDARKVFDSVKNKDVYT---WNSMITGYCQAGYCGKAYELFTRMQ 445

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           +  + P+I ++   ++ Y    D      L +++E +G +  +  T++ +   Y++ G K
Sbjct: 446 DANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKK 505

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI-- 319
           D+AL   +K +   +  ++V    ++   A+L   K M+R    +   C  + N + I  
Sbjct: 506 DEALELFRKMQFSRFMPNSVTILSLLPACANLLGAK-MVR----EIHGCVLRRNLDAIHA 560

Query: 320 ---TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSM 376
               +     K GD+E +  +     L   T D    N L+ GY   G    A  +   M
Sbjct: 561 VKNALTDTYAKSGDIEYSRTIF----LGMETKDIITWNSLIGGYVLHGSYGPALALFNQM 616

Query: 377 VDKGKTPTPNSWSIIASGHVAKENMEKAFQCF 408
             +G TP   + S I   H    N+++  + F
Sbjct: 617 KTQGITPNRGTLSSIILAHGLMGNVDEGKKVF 648


>AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19603828-19606287 FORWARD
           LENGTH=819
          Length = 819

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 1/233 (0%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN +++   +  + E     L    + G+ P+  SY   + +Y    + +   KLL ++ 
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMA 407

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
             G    D +TY  + +  V +G  D A+    K  D+    DA  YN ++S     G+ 
Sbjct: 408 ERG-CKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRF 466

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
                L+    D         Y T++   ++ GD +EA K+       G   D    N +
Sbjct: 467 LPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAM 526

Query: 357 LIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
           + G+ R G++++A   +  M ++   P   ++S I  G+V +++M  A + F+
Sbjct: 527 IKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFR 579



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 127/323 (39%), Gaps = 22/323 (6%)

Query: 175 LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEK 234
           + YN I+  Y +    E    V   +K  G  P + ++   +N +    D    ++LL +
Sbjct: 241 VFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSE 300

Query: 235 IETEGDIAVDWMTYSTVANFYVKAGLKDKA----LIYLKKCEDKAYKRDAVAYNHMISHY 290
           ++  G     W   + +   Y      D A     I    C     K D   YN +I+  
Sbjct: 301 VKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDC-----KPDVATYNILINRL 355

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQL---NREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
              GKK+  +       +  KK L   N  Y  ++    K  + + A KLL Q    G  
Sbjct: 356 CKEGKKEVAVGFLD---EASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCK 412

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            D     IL+ G    G ++ A  M   ++D+G +P    ++++ SG         A   
Sbjct: 413 PDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLL 472

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVED-FVNSLKKVMSMNRDMYLSLI 466
           F E L     ++   P + V ++++     + D +E    F  S++K + ++   + ++I
Sbjct: 473 FSEML-----DRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMI 527

Query: 467 KLYVRCGREVDGVLESMKADNIE 489
           K + R G  +D  L  M   N E
Sbjct: 528 KGFCRSGM-LDEALACMNRMNEE 549


>AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:20791817-20793250 REVERSE
           LENGTH=477
          Length = 477

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 118/302 (39%), Gaps = 46/302 (15%)

Query: 153 AGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFS 211
           AG     + Q  K K   +    H YN I+      +Q++ +  V   M EDG +PD+ +
Sbjct: 200 AGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLT 259

Query: 212 YRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKC 271
           Y I +                                   ANF  + G  D+    L + 
Sbjct: 260 YNIVM----------------------------------FANF--RLGKTDRLYRLLDEM 283

Query: 272 EDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDL 331
               +  D   YN ++ H A+  K    + L    ++   +     + T++  L + G L
Sbjct: 284 VKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKL 343

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           E  +  + +    G T D     +++ GY   G +EKAE M + M +KG+ P   +++ +
Sbjct: 344 EACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSM 403

Query: 392 ASGHVAKENMEKAFQCFKEALAVLA--ENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVN 449
             G             FKEA A+L   E++G  P   V S++++ + +   + E  + V 
Sbjct: 404 IRGFCMAGK-------FKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVK 456

Query: 450 SL 451
            +
Sbjct: 457 DM 458


>AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21824233 REVERSE
           LENGTH=583
          Length = 583

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 27/328 (8%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           L+  Y   G+ + +   +  +  MG   + + Y  +M  Y R  +      +   M+  G
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKI--ETEGDIAVDWMTYSTVANFYVKAGLKD 262
             P   +Y+I L ++      +  E++ E +  E +  +  D   Y  +   Y KAG  +
Sbjct: 205 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 264

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISH---YASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
           KA         K   +  V YN ++S    Y  + K  D M+   +Q D         Y 
Sbjct: 265 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVV------SYA 318

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
            ++    +    EEA  +  +   +G     K  NILL  ++  G++E+A+T+ +SM   
Sbjct: 319 LLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 378

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
              P   S++ + S +V   +ME A + FK       +  G+ P      +++       
Sbjct: 379 RIFPDLWSYTTMLSAYVNASDMEGAEKFFKR-----IKVDGFEPNIVTYGTLIKGYAKAN 433

Query: 440 DIEEVEDFVNSLKKVMSMNRDMYLSLIK 467
           D+E          K+M +   M LS IK
Sbjct: 434 DVE----------KMMEVYEKMRLSGIK 451



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH--YNNIMSLYTRTEQHEKVPDVLAMM 200
           +  L+  Y  A   +++LS  ++M D G V P H  YN ++  +  +   E+   V   M
Sbjct: 317 YALLIKAYGRARREEEALSVFEEMLDAG-VRPTHKAYNILLDAFAISGMVEQAKTVFKSM 375

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
           + D + PD++SY   L++Y   SD+E  EK  ++I+ +G    + +TY T+   Y KA  
Sbjct: 376 RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDG-FEPNIVTYGTLIKGYAKAND 434

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL--WKLQKDNCKKQLNREY 318
            +K +   +K      K +      ++    + G+ K+      W  + ++C    +++ 
Sbjct: 435 VEKMMEVYEKMRLSGIKANQTILTTIMD---ASGRCKNFGSALGWYKEMESCGVPPDQKA 491

Query: 319 ITMLGCLVKLGD-LEEAEKLLG 339
             +L  L    D LEEA++L G
Sbjct: 492 KNVLLSLASTQDELEEAKELTG 513


>AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21823919 REVERSE
           LENGTH=590
          Length = 590

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 27/328 (8%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           L+  Y   G+ + +   +  +  MG   + + Y  +M  Y R  +      +   M+  G
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 211

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKI--ETEGDIAVDWMTYSTVANFYVKAGLKD 262
             P   +Y+I L ++      +  E++ E +  E +  +  D   Y  +   Y KAG  +
Sbjct: 212 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 271

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISH---YASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
           KA         K   +  V YN ++S    Y  + K  D M+   +Q D         Y 
Sbjct: 272 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVV------SYA 325

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
            ++    +    EEA  +  +   +G     K  NILL  ++  G++E+A+T+ +SM   
Sbjct: 326 LLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 385

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
              P   S++ + S +V   +ME A + FK       +  G+ P      +++       
Sbjct: 386 RIFPDLWSYTTMLSAYVNASDMEGAEKFFKR-----IKVDGFEPNIVTYGTLIKGYAKAN 440

Query: 440 DIEEVEDFVNSLKKVMSMNRDMYLSLIK 467
           D+E          K+M +   M LS IK
Sbjct: 441 DVE----------KMMEVYEKMRLSGIK 458



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH--YNNIMSLYTRTEQHEKVPDVLAMM 200
           +  L+  Y  A   +++LS  ++M D G V P H  YN ++  +  +   E+   V   M
Sbjct: 324 YALLIKAYGRARREEEALSVFEEMLDAG-VRPTHKAYNILLDAFAISGMVEQAKTVFKSM 382

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKA 258
           + D + PD++SY   L++Y   SD+E  EK  ++I+ +G    + +TY T+   Y KA
Sbjct: 383 RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDG-FEPNIVTYGTLIKGYAKA 439


>AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11336479-11339052 FORWARD
           LENGTH=857
          Length = 857

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 154/333 (46%), Gaps = 26/333 (7%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGV 205
           +L  Y M GS         ++ D+   S   +N+I+S + R     +       M   GV
Sbjct: 76  ILGMYAMCGSFSDCGKMFYRL-DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV 134

Query: 206 SPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKAL 265
           SPD+ ++   + +  A  + + ++ L + + + G   +D   +  VA+  +KA L+   +
Sbjct: 135 SPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLG---MDCNEF--VASSLIKAYLEYGKI 189

Query: 266 IYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCL 325
               K  D+  ++D V +N M++ YA  G    +++ + + + +   Q++   +T   C+
Sbjct: 190 DVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMD---QISPNAVT-FDCV 245

Query: 326 VKLGD----LEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           + +      ++   +L G   +SG  ++  + N LL  YS+ G  + A  + R M+ +  
Sbjct: 246 LSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFR-MMSRAD 304

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
           T T   W+ + SG+V    ME++   F E ++      G  P +   SS+L  V+   ++
Sbjct: 305 TVT---WNCMISGYVQSGLMEESLTFFYEMIS-----SGVLPDAITFSSLLPSVSKFENL 356

Query: 442 EEVEDFVNSLKKVMSMNRDMYLS--LIKLYVRC 472
           E  +  ++      S++ D++L+  LI  Y +C
Sbjct: 357 EYCKQ-IHCYIMRHSISLDIFLTSALIDAYFKC 388


>AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 158/380 (41%), Gaps = 28/380 (7%)

Query: 58  VLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQL--E 115
           +L+  L  G  V       ++  L +   F  AL+    M  + + P   G     L   
Sbjct: 422 LLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP--GGGLLTTLISG 479

Query: 116 LIGRVRGLESAESYFQNLSDSDKTE-KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-S 173
           L    +  ++ E +FQ L+     + +   ALL+    AG +D++    +++   G V  
Sbjct: 480 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 539

Query: 174 PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
            + YN ++S     ++ ++    L  M + G+ PD ++Y I +        L NM K+ E
Sbjct: 540 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI------CGLFNMNKVEE 593

Query: 234 KIETEGDIAVDWM-----TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
            I+   D   + M     TYS + +   KA   ++   +  +   K  + + V YNH+I 
Sbjct: 594 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 653

Query: 289 HYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSG--- 345
            Y   G+    + L +  K       +  Y +++  +  +  +EEA+ L  +  + G   
Sbjct: 654 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 713

Query: 346 NTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAF 405
           N + +     L+ GY + G + K E +LR M  K   P   +++++  G+    N+ +A 
Sbjct: 714 NVFHYTA---LIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 770

Query: 406 QCFKEALAVLAENKGWRPKS 425
           +   E        KG  P S
Sbjct: 771 RLLNE-----MREKGIVPDS 785



 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 171 FVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
           F S    N +++   R  + +K  +   ++ + GVSPD++ +   +N++     +E   K
Sbjct: 223 FPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVK 281

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           L  K+E E  +A + +T++TV +     G  D+A ++ +K  ++  +   + Y+ ++   
Sbjct: 282 LFSKME-EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVK-- 338

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREYIT---MLGCLVKLGDLEEAEKLLGQWELSGNT 347
             L + K +   + + K+  KK      I    ++   ++ G L +A ++       G +
Sbjct: 339 -GLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLS 397

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
                 N L+ GY + G  + AE +L+ M+  G      S++ +
Sbjct: 398 LTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 441


>AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 158/380 (41%), Gaps = 28/380 (7%)

Query: 58  VLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQL--E 115
           +L+  L  G  V       ++  L +   F  AL+    M  + + P   G     L   
Sbjct: 422 LLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP--GGGLLTTLISG 479

Query: 116 LIGRVRGLESAESYFQNLSDSDKTE-KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-S 173
           L    +  ++ E +FQ L+     + +   ALL+    AG +D++    +++   G V  
Sbjct: 480 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 539

Query: 174 PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
            + YN ++S     ++ ++    L  M + G+ PD ++Y I +        L NM K+ E
Sbjct: 540 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI------CGLFNMNKVEE 593

Query: 234 KIETEGDIAVDWM-----TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
            I+   D   + M     TYS + +   KA   ++   +  +   K  + + V YNH+I 
Sbjct: 594 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 653

Query: 289 HYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSG--- 345
            Y   G+    + L +  K       +  Y +++  +  +  +EEA+ L  +  + G   
Sbjct: 654 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 713

Query: 346 NTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAF 405
           N + +     L+ GY + G + K E +LR M  K   P   +++++  G+    N+ +A 
Sbjct: 714 NVFHYTA---LIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 770

Query: 406 QCFKEALAVLAENKGWRPKS 425
           +   E        KG  P S
Sbjct: 771 RLLNE-----MREKGIVPDS 785



 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 171 FVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
           F S    N +++   R  + +K  +   ++ + GVSPD++ +   +N++     +E   K
Sbjct: 223 FPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVK 281

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           L  K+E E  +A + +T++TV +     G  D+A ++ +K  ++  +   + Y+ ++   
Sbjct: 282 LFSKME-EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVK-- 338

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREYIT---MLGCLVKLGDLEEAEKLLGQWELSGNT 347
             L + K +   + + K+  KK      I    ++   ++ G L +A ++       G +
Sbjct: 339 -GLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLS 397

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
                 N L+ GY + G  + AE +L+ M+  G      S++ +
Sbjct: 398 LTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 441


>AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9128516-9130321 FORWARD
           LENGTH=601
          Length = 601

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 20/300 (6%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN+++ +Y+R +  ++V  +   M  + + PD  ++ + + +  +   LE  E +  K  
Sbjct: 84  YNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAV 143

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
             G    D    S+V N Y+K G  D+A +       K  KRD + +  M++ +A  GK 
Sbjct: 144 DFG-YKNDVFVCSSVLNLYMKCGKMDEAEVLF----GKMAKRDVICWTTMVTGFAQAGKS 198

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVK---LGDLEEAEKLLGQWELSGNTYDFKVP 353
              +  ++  ++   +   R+ + MLG L     LGD +    + G    +G   +  V 
Sbjct: 199 LKAVEFYREMQN---EGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVE 255

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
             L+  Y++ G IE A  +   M+ K    T  SW  + SG        KAF+   E   
Sbjct: 256 TSLVDMYAKVGFIEVASRVFSRMMFK----TAVSWGSLISGFAQNGLANKAFEAVVE--- 308

Query: 414 VLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCG 473
              ++ G++P    +  +L   +    ++        + K   ++R    +L+ +Y +CG
Sbjct: 309 --MQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTATALMDMYSKCG 366


>AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:11783927-11786533 REVERSE
           LENGTH=868
          Length = 868

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 174/431 (40%), Gaps = 48/431 (11%)

Query: 10  LRNKFHSFTATFQLLRPYC--SASTTVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGH 67
            + KF  +      +R YC  + S++   N  NL+ + SP G    S + +L  + ++G 
Sbjct: 16  FKPKFRIYANGVAQVRIYCFGTVSSSRLYNAHNLFDK-SP-GRDRESYISLLFGFSRDG- 72

Query: 68  AVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAE 127
             R QE +R+         F    ++   M       +L     +  EL GR    +  +
Sbjct: 73  --RTQEAKRL---------FLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIK 121

Query: 128 SYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRT 187
             F  L D      V  +L++ Y+   +         +MK+   V+   +  ++S Y R 
Sbjct: 122 --FGFLDDVS----VGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT---WTTLISGYARN 172

Query: 188 EQHEKVPDVLAMMKEDGVSPDIFSYRICLN-----SYGARSDLENMEKLLEKIETEGDIA 242
             +++V  +   M+ +G  P+ F++   L        G R     +  ++ K   +  I 
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG--LQVHTVVVKNGLDKTIP 230

Query: 243 VDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL 302
           V     +++ N Y+K G   KA I   K E K+     V +N MIS YA+ G   + + +
Sbjct: 231 VS----NSLINLYLKCGNVRKARILFDKTEVKS----VVTWNSMISGYAANGLDLEALGM 282

Query: 303 WKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSR 362
           +   + N  +     + +++     L +L   E+L       G  +D  +   L++ YS+
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSK 342

Query: 363 KGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWR 422
              +  A   LR   + G      SW+ + SG +  +  E+A   F E      + KG R
Sbjct: 343 CTAMLDA---LRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSE-----MKRKGVR 394

Query: 423 PKSDVVSSILS 433
           P     S IL+
Sbjct: 395 PNEFTYSVILT 405



 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 18/272 (6%)

Query: 134 SDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKV 193
           ++ +++  V  ALL+ YV  G V+++      + D   V+   ++ +++ Y +T + E  
Sbjct: 422 TNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVA---WSAMLAGYAQTGETEAA 478

Query: 194 PDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVAN 253
             +   + + G+ P+ F++   LN   A +      K       +  +       S +  
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQ 313
            Y K G  + A    K+  +K    D V++N MIS YA  G+    + ++K  K    K 
Sbjct: 539 MYAKKGNIESAEEVFKRQREK----DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKM 594

Query: 314 LNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIG-YSRKGLIEKAETM 372
               +I +       G +EE EK              K  N  ++  YSR G +EKA  +
Sbjct: 595 DGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 654

Query: 373 LRSMVDKGKTPTPNS---W-SIIASGHVAKEN 400
           + +M      P P     W +I+A+  V K+ 
Sbjct: 655 IENM------PNPAGSTIWRTILAACRVHKKT 680



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 141/325 (43%), Gaps = 34/325 (10%)

Query: 160 LSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNS 218
           L  ++  K++G V + + +  ++S + + +  E+  D+ + MK  GV P+ F+Y + L +
Sbjct: 347 LDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406

Query: 219 YGARSDLENMEKLL----EKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDK 274
               S  E   +++    E+  T G   +D          YVK G  ++A       +DK
Sbjct: 407 LPVISPSEVHAQVVKTNYERSSTVGTALLDA---------YVKLGKVEEAAKVFSGIDDK 457

Query: 275 AYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
               D VA++ M++ YA  G+ +  ++++ +L K   K         +  C      + +
Sbjct: 458 ----DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQ 513

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
            ++  G    S       V + LL  Y++KG IE AE + +   +K       SW+ + S
Sbjct: 514 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLV----SWNSMIS 569

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVS--SILSWVTDNRDIEEVEDFVNSL 451
           G+       KA   FKE        K  + K D V+   + +  T    +EE E + + +
Sbjct: 570 GYAQHGQAMKALDVFKEM-------KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIM 622

Query: 452 KK--VMSMNRDMYLSLIKLYVRCGR 474
            +   ++  ++    ++ LY R G+
Sbjct: 623 VRDCKIAPTKEHNSCMVDLYSRAGQ 647


>AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7462820-7465740 FORWARD
           LENGTH=874
          Length = 874

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 114/257 (44%), Gaps = 4/257 (1%)

Query: 139 TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVL 197
            E   G L+  Y  AG  DK L  +  M+  G + + + YN I+S + R  +++    ++
Sbjct: 181 NEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMV 240

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAV---DWMTYSTVANF 254
             M+E+G+ PDI ++   +++      + +  ++   +E +  + +   + +TY+ +   
Sbjct: 241 EKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKG 300

Query: 255 YVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQL 314
           + K GL + A    +   +        +YN  +      GK  +   + K   D      
Sbjct: 301 FCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPS 360

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
              Y  ++  L KLG L +A+ ++G  + +G   D      LL GY   G ++ A+++L+
Sbjct: 361 IYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQ 420

Query: 375 SMVDKGKTPTPNSWSII 391
            M+     P   + +I+
Sbjct: 421 EMMRNNCLPNAYTCNIL 437



 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 123/304 (40%), Gaps = 27/304 (8%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIM--SLYTRTEQHEKVPDVLAM 199
            +G LL+ Y   G VD + S +Q+M     +   +  NI+  SL+      E   ++L  
Sbjct: 398 TYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE-AEELLRK 456

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAV---------------- 243
           M E G   D  +  I ++      +L+   ++++ +   G  A+                
Sbjct: 457 MNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLI 516

Query: 244 ------DWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK 297
                 D +TYST+ N   KAG   +A     +   +  + D+VAYN  I H+   GK  
Sbjct: 517 ENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKIS 576

Query: 298 DMMRLWK-LQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
              R+ K ++K  C K L      +LG  +K   + E   L+ + +  G + +    N  
Sbjct: 577 SAFRVLKDMEKKGCHKSLETYNSLILGLGIK-NQIFEIHGLMDEMKEKGISPNICTYNTA 635

Query: 357 LIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLA 416
           +        +E A  +L  M+ K   P   S+  +        + + A + F+ A+++  
Sbjct: 636 IQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICG 695

Query: 417 ENKG 420
           + +G
Sbjct: 696 QKEG 699


>AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4572180-4574426 FORWARD
           LENGTH=748
          Length = 748

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 146/337 (43%), Gaps = 39/337 (11%)

Query: 165 KMKDMGFVSPLH----------YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRI 214
           K +++GF   L           +N+++S YT+   +E+  ++    +E  +  D F+Y  
Sbjct: 94  KCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAG 153

Query: 215 CLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDK 274
            L   G R DL+ + +LL  +     ++      + + + Y K G  D+A+    +C++ 
Sbjct: 154 ALGFCGERCDLD-LGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDE- 211

Query: 275 AYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKL--GDL 331
              RD V++N +IS Y  +G  ++ + L  K+ +D            +  C + L  G +
Sbjct: 212 ---RDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFI 268

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPN--SWS 389
           E+   +       G  +D  V   LL  Y++ G +++A  +   M      P+ N  +++
Sbjct: 269 EKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLM------PSKNVVTYN 322

Query: 390 IIASG-----HVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEV 444
            + SG      +  E   +AF+ F +      + +G  P     S +L   +  + +E  
Sbjct: 323 AMISGFLQMDEITDEASSEAFKLFMD-----MQRRGLEPSPSTFSVVLKACSAAKTLEYG 377

Query: 445 EDFVNSLKKVMSMNRDMYL--SLIKLYVRCGREVDGV 479
              +++L    +   D ++  +LI+LY   G   DG+
Sbjct: 378 RQ-IHALICKNNFQSDEFIGSALIELYALMGSTEDGM 413


>AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26339876-26341789 REVERSE
           LENGTH=637
          Length = 637

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 114/253 (45%), Gaps = 3/253 (1%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYR 213
           G+V   + +M+K ++   + P  +  ++  +   +  +K  +VL  M + G  PD + + 
Sbjct: 164 GAVWGLIEEMRK-ENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFG 222

Query: 214 ICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED 273
             L++      +++  KL E +       V+   ++++   + + G   +A   L +  +
Sbjct: 223 CLLDALCKHGSVKDAAKLFEDMRMR--FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNE 280

Query: 274 KAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEE 333
             ++ D V Y +++S YA+ GK  D   L +  +    +     Y  ++  L K+  +EE
Sbjct: 281 AGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEE 340

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
           A K+  + E      D      L+ G+ + G I+K   +L  M+ KG  P+  ++  I  
Sbjct: 341 AMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMV 400

Query: 394 GHVAKENMEKAFQ 406
            H  KE+ E+  +
Sbjct: 401 AHEKKESFEECLE 413


>AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10332375-10334558 REVERSE
           LENGTH=727
          Length = 727

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 10/202 (4%)

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAM 199
           K++ AL++          ++  ++K+K+ GF +  L YN ++ L+      EKV ++L  
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG-DIAVDWMTYSTVANFYVKA 258
           M+++G  PD  +Y   ++ +G   D E++E+++E++  +G D  V   TY  V + Y   
Sbjct: 572 MEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTV--TTYGAVIDAYCSV 629

Query: 259 GLKDKALIYLKKCE-DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
           G  D+AL   K          + V YN +I+ ++ LG     + L    K+  K ++ R 
Sbjct: 630 GELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL----KEEMKMKMVRP 685

Query: 318 YITMLGCLVK-LGDLEEAEKLL 338
            +     L K L +  + E LL
Sbjct: 686 NVETYNALFKCLNEKTQGETLL 707



 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 104/246 (42%), Gaps = 1/246 (0%)

Query: 165 KMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSD 224
           K+++    + + YN ++  Y R  + E   +V++ MKED + P++ +    +        
Sbjct: 397 KLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHG 456

Query: 225 LENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYN 284
           L         +E EG +  + +TY T+ +        +KA+ + +K  +     DA  Y 
Sbjct: 457 LNMAVVFFMDMEKEG-VKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYY 515

Query: 285 HMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELS 344
            +IS    + +  D +R+ +  K+         Y  ++G      + E+  ++L   E  
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           G   D    N L+  + +    E  E M+  M + G  PT  ++  +   + +   +++A
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEA 635

Query: 405 FQCFKE 410
            + FK+
Sbjct: 636 LKLFKD 641


>AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10374927-10377227 FORWARD
           LENGTH=766
          Length = 766

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 10/202 (4%)

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAM 199
           K++ AL++          ++  ++K+K+ GF +  L YN ++ L+      EKV ++L  
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG-DIAVDWMTYSTVANFYVKA 258
           M+++G  PD  +Y   ++ +G   D E++E+++E++  +G D  V   TY  V + Y   
Sbjct: 572 MEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTV--TTYGAVIDAYCSV 629

Query: 259 GLKDKALIYLKKCE-DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
           G  D+AL   K          + V YN +I+ ++ LG     + L    K+  K ++ R 
Sbjct: 630 GELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL----KEEMKMKMVRP 685

Query: 318 YITMLGCLVK-LGDLEEAEKLL 338
            +     L K L +  + E LL
Sbjct: 686 NVETYNALFKCLNEKTQGETLL 707



 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 104/246 (42%), Gaps = 1/246 (0%)

Query: 165 KMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSD 224
           K+++    + + YN ++  Y R  + E   +V++ MKED + P++ +    +        
Sbjct: 397 KLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHG 456

Query: 225 LENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYN 284
           L         +E EG +  + +TY T+ +        +KA+ + +K  +     DA  Y 
Sbjct: 457 LNMAVVFFMDMEKEG-VKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYY 515

Query: 285 HMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELS 344
            +IS    + +  D +R+ +  K+         Y  ++G      + E+  ++L   E  
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           G   D    N L+  + +    E  E M+  M + G  PT  ++  +   + +   +++A
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEA 635

Query: 405 FQCFKE 410
            + FK+
Sbjct: 636 LKLFKD 641



 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 175 LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEK 234
           + YN ++S + + +  E V  ++  M+EDG+ P + +Y   +++Y +  +L+   KL + 
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641

Query: 235 IETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG 294
           +     +  + + Y+ + N + K G   +AL   ++ + K  + +   YN +   +  L 
Sbjct: 642 MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNAL---FKCLN 698

Query: 295 KKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
           +K     L KL  +  ++      ITM   + +L   +E  KL
Sbjct: 699 EKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKL 741


>AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Pentatricopeptide repeat
           (InterPro:IPR002885); BEST Arabidopsis thaliana protein
           match is: Pentatricopeptide repeat (PPR) superfamily
           protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
           12380 proteins in 263 species: Archae - 4; Bacteria -
           27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
           - 0; Other Eukaryotes - 935 (source: NCBI BLink). |
           chr4:575843-577243 REVERSE LENGTH=466
          Length = 466

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 38/290 (13%)

Query: 139 TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMS--------------L 183
           T ++   L+  Y  A   +K LS   KM +  F   P H N I+               L
Sbjct: 118 TGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFEL 177

Query: 184 YTRTEQHEKVPD----------------------VLAMMKEDGVSPDIFSYRICLNSYGA 221
           +  +  H  +P+                      +   M E  V PD+ SY+I +  +  
Sbjct: 178 FKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCR 237

Query: 222 RSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAV 281
           +  +    +LL+ +  +G +  D ++Y+T+ N   +     +A   L + + K    D V
Sbjct: 238 KGQVNGAMELLDDMLNKGFVP-DRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLV 296

Query: 282 AYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQW 341
            YN MI  +    +  D  ++      N     +  Y T++G L   G  +E +K L + 
Sbjct: 297 HYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEM 356

Query: 342 ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
              G +  F V N L+ G+   G +E+A  ++  ++  G+T   ++W ++
Sbjct: 357 ISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMV 406


>AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4731056-4733707 REVERSE
           LENGTH=883
          Length = 883

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 41/283 (14%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           Y  ++  + R     K  +   ++    + PD+F+Y I +N+Y   ++ +    L E ++
Sbjct: 603 YGKLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMK 662

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
              D+  D +TYS + N        D  L   ++ E      D V Y  MI+ Y  L   
Sbjct: 663 RR-DVKPDVVTYSVLLN-------SDPELDMKREMEAFDVIPDVVYYTIMINRYCHLNDL 714

Query: 297 KDMMRLWK----------------LQKDNCKKQLNRE------------YITMLGCLVKL 328
           K +  L+K                L K+  ++ L+RE            Y  ++    K+
Sbjct: 715 KKVYALFKDMKRREIVPDVVTYTVLLKNKPERNLSREMKAFDVKPDVFYYTVLIDWQCKI 774

Query: 329 GDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSW 388
           GDL EA+++  Q   SG   D      L+    + G +++A+ +   M++ G  P    +
Sbjct: 775 GDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPDVVPY 834

Query: 389 SIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSI 431
           + + +G      + KA +  KE L      KG +P    +S++
Sbjct: 835 TALIAGCCRNGFVLKAVKLVKEML-----EKGIKPTKASLSAV 872



 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M+   V PD+  Y I +N Y   +DL+ +  L + ++   +I  D +TY+ +        
Sbjct: 689 MEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRR-EIVPDVVTYTVL-------- 739

Query: 260 LKDKALIYLKKCEDKAY--KRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
           LK+K    L + E KA+  K D   Y  +I     +G   +  R++    ++        
Sbjct: 740 LKNKPERNLSR-EMKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAP 798

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y  ++ C  K+G L+EA+ +  +   SG   D      L+ G  R G + KA  +++ M+
Sbjct: 799 YTALIACCCKMGYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEML 858

Query: 378 DKGKTPTPNSWSIIASGHVAK 398
           +KG  PT  S S +   H AK
Sbjct: 859 EKGIKPTKASLSAV---HYAK 876



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 2/222 (0%)

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYST 250
           E    V+  M++ G+ PD++ Y   +  +    ++     +  K+  +    ++ +  S+
Sbjct: 308 EDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRK-RINCVIVSS 366

Query: 251 VANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNC 310
           +   Y + G   +A    K+  +     D V YN        LGK ++ + L++      
Sbjct: 367 ILQCYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKG 426

Query: 311 KKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
                  Y T++G     G   +A  L+ + + +G T D  + N+L  G +  GL ++A 
Sbjct: 427 IAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAF 486

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
             L+ M ++G  PT  + +++  G +    ++KA + F E+L
Sbjct: 487 ETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKA-EAFYESL 527


>AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22768974-22771274 REVERSE
           LENGTH=766
          Length = 766

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 10/202 (4%)

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAM 199
           K++ AL++          ++  ++K+K+ GF +  L YN ++ L+      EKV ++L  
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTD 571

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG-DIAVDWMTYSTVANFYVKA 258
           M+++G  PD  +Y   ++ +G   D E++E+++E++  +G D  V   TY  V + Y   
Sbjct: 572 MEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTV--TTYGAVIDAYCSV 629

Query: 259 GLKDKALIYLKKCE-DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
           G  D+AL   K          + V YN +I+ ++ LG     + L    K+  K ++ R 
Sbjct: 630 GELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL----KEEMKMKMVRP 685

Query: 318 YITMLGCLVK-LGDLEEAEKLL 338
            +     L K L +  + E LL
Sbjct: 686 NVETYNALFKCLNEKTQGETLL 707



 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 116/276 (42%), Gaps = 4/276 (1%)

Query: 138 KTEKVH-GALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVP 194
           K + +H   L++     G + ++   + +MK     +P  + YN ++  Y R  + E   
Sbjct: 367 KADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAK 426

Query: 195 DVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANF 254
           +V++ MKED + P++ +    +        L         +E EG +  + +TY T+ + 
Sbjct: 427 EVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEG-VKGNVVTYMTLIHA 485

Query: 255 YVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQL 314
                  +KA+ + +K  +     DA  Y  +IS    + +  D +R+ +  K+      
Sbjct: 486 CCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLD 545

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
              Y  ++G      + E+  ++L   E  G   D    N L+  + +    E  E M+ 
Sbjct: 546 LLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMME 605

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            M + G  PT  ++  +   + +   +++A + FK+
Sbjct: 606 QMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641



 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 175 LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEK 234
           + YN ++S + + +  E V  ++  M+EDG+ P + +Y   +++Y +  +L+   KL + 
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641

Query: 235 IETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG 294
           +     +  + + Y+ + N + K G   +AL   ++ + K  + +   YN +   +  L 
Sbjct: 642 MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNAL---FKCLN 698

Query: 295 KKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
           +K     L KL  +  ++      ITM   + +L   +E  KL
Sbjct: 699 EKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKL 741


>AT1G08610.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2733788-2735467 REVERSE
           LENGTH=559
          Length = 559

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 117/259 (45%), Gaps = 6/259 (2%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN++++   R    E+V  V+  +   G+  +  +Y   L+S  +    + +E++L  I 
Sbjct: 282 YNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEIL-NIM 340

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
            +       +TY+ + N   KA L  +A+ +  +  ++    D V YN ++   +  G  
Sbjct: 341 YQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMV 400

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
            D + L  L K+ C       Y +++  L K G +++A +L  Q   +G   D      L
Sbjct: 401 DDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSL 460

Query: 357 LIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLA 416
           + G+ R  L+E+A  +L+   ++G     +++ ++  G   K+ +E A +  +  L    
Sbjct: 461 IYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLT--- 517

Query: 417 ENKGWRPKSDVVSSILSWV 435
              G +P   + ++I+  V
Sbjct: 518 --GGCKPDETIYTAIVKGV 534


>AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:5760793-5762619 FORWARD
           LENGTH=608
          Length = 608

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 120/272 (44%), Gaps = 7/272 (2%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIM-SLYTRTEQHEKVPDVLAMMK 201
           + +L+  +V  G VD++ + + K++  G    +   N+M   YTR  + E+   V   ++
Sbjct: 285 YTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLE 344

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           +  + PD +++   L+S       + + ++   I T+ D+    +T + ++N + K G  
Sbjct: 345 KRKLVPDQYTFASILSSLCLSGKFDLVPRITHGIGTDFDL----VTGNLLSNCFSKIGYN 400

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT- 320
             AL  L     K +  D   Y   +S     G  +  ++++K+     KK L+  + + 
Sbjct: 401 SYALKVLSIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKE-KKHLDAHFHSA 459

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           ++  L++LG    A  L  +  L     D     + + G  R   IE+A ++   M + G
Sbjct: 460 IIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGG 519

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
             P   ++  I SG   ++  EK  +  +E +
Sbjct: 520 IYPNRRTYRTIISGLCKEKETEKVRKILRECI 551


>AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2134060-2136249 REVERSE
           LENGTH=729
          Length = 729

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 177/422 (41%), Gaps = 31/422 (7%)

Query: 4   SPFSAILRNKFHSFTATFQLLRPYCSA----STTVTINRRNLYSRISPLGDPSLSVVPVL 59
           S FS++L NK    T TF  L   C++    S  ++I+++ L +  S     S S+V + 
Sbjct: 32  STFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLY 91

Query: 60  ENWLQEGHA------VRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQ 113
             +    HA      +R++++      +    R     +    ++      I PG   + 
Sbjct: 92  AKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTL- 150

Query: 114 LELIGRVRGLESAESY--FQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF 171
           LE++  V  +   +    F  +   D    V  ++LN Y     V  +     +M+    
Sbjct: 151 LEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDM 210

Query: 172 VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKL 231
           VS   +N ++S Y       ++  +L  M+ DG+ PD  ++   L+  G   DLE M ++
Sbjct: 211 VS---WNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLE-MGRM 266

Query: 232 LEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYA 291
           L     +    VD    + +   Y+K G ++ +   L+   +K    D V +  MIS   
Sbjct: 267 LHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNK----DVVCWTVMISGLM 322

Query: 292 SLGKKKDMMRLWK--LQKDNCKKQLNREYI-TMLGCLVKLGDLEEAEKLLGQWELSGNTY 348
            LG+ +  + ++   LQ  +    L+ E I +++    +LG  +    + G     G T 
Sbjct: 323 RLGRAEKALIVFSEMLQSGS---DLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTL 379

Query: 349 DFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCF 408
           D    N L+  Y++ G ++K+  +   M ++       SW+ I SG+    ++ KA   F
Sbjct: 380 DTPALNSLITMYAKCGHLDKSLVIFERMNERDLV----SWNAIISGYAQNVDLCKALLLF 435

Query: 409 KE 410
           +E
Sbjct: 436 EE 437



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 146/345 (42%), Gaps = 43/345 (12%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  +L+N Y   G +  +    ++M++   V   H+  ++  Y+R     +   ++  M+
Sbjct: 83  ISSSLVNLYAKFGLLAHARKVFEEMRERDVV---HWTAMIGCYSRAGIVGEACSLVNEMR 139

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLE--KIETEGDIAV------DWMTYSTVAN 253
             G+ P            G  + LE +  +LE  +++   D AV      D    +++ N
Sbjct: 140 FQGIKP------------GPVTLLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLN 187

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMR-LWKLQKDNCKK 312
            Y K      A    K   D+  +RD V++N MIS YAS+G   ++++ L++++ D  + 
Sbjct: 188 LYCKCDHVGDA----KDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRP 243

Query: 313 QLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETM 372
              + +   L     + DLE    L  Q   +G   D  +   L+  Y + G  E +  +
Sbjct: 244 D-QQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRV 302

Query: 373 LRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
           L ++ +K        W+++ SG +     EKA   F E L       G    S+ ++S++
Sbjct: 303 LETIPNKDVV----CWTVMISGLMRLGRAEKALIVFSEML-----QSGSDLSSEAIASVV 353

Query: 433 SWVTDNRDIE---EVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGR 474
           +        +    V  +V  L+   +++     SLI +Y +CG 
Sbjct: 354 ASCAQLGSFDLGASVHGYV--LRHGYTLDTPALNSLITMYAKCGH 396



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 127/302 (42%), Gaps = 20/302 (6%)

Query: 176 HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKI 235
           ++N+ ++  +    H++V    + M  + + PD F++   L +  +   L     + +++
Sbjct: 13  YFNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQV 72

Query: 236 ETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK 295
              G  + D+   S++ N Y K GL    L + +K  ++  +RD V +  MI  Y+  G 
Sbjct: 73  LVNG-FSSDFYISSSLVNLYAKFGL----LAHARKVFEEMRERDVVHWTAMIGCYSRAGI 127

Query: 296 KKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
             +   L    +    + +    +T+L  L  + ++ + + L     + G   D  V N 
Sbjct: 128 VGEACSLVNEMR---FQGIKPGPVTLLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNS 184

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVL 415
           +L  Y +   +  A+ +   M  +       SW+ + SG+ +  NM +  +     L   
Sbjct: 185 MLNLYCKCDHVGDAKDLFDQMEQRDMV----SWNTMISGYASVGNMSEILK-----LLYR 235

Query: 416 AENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYL--SLIKLYVRCG 473
               G RP      + LS      D+E        + K    + DM+L  +LI +Y++CG
Sbjct: 236 MRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKT-GFDVDMHLKTALITMYLKCG 294

Query: 474 RE 475
           +E
Sbjct: 295 KE 296


>AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26805651-26807183 REVERSE
           LENGTH=510
          Length = 510

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/364 (19%), Positives = 157/364 (43%), Gaps = 11/364 (3%)

Query: 90  ALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNC 149
           AL V +W  ++        +    +E +G+++  +   S   ++       K   AL++ 
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170

Query: 150 -YVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSP 207
            Y  A  V +++    KM++ GF +    +N ++   +++        V   MK+    P
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230

Query: 208 DIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIY 267
           DI SY I L  +G   +L  ++++  +++ EG    D + Y  + N + KA   ++A+ +
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDEG-FEPDVVAYGIIINAHCKAKKYEEAIRF 289

Query: 268 LKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVK 327
             + E +  K     +  +I+   S  K  D +  ++  K +        Y  ++G    
Sbjct: 290 FNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCW 349

Query: 328 LGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNS 387
              +E+A K + +  L G   + +  +I+L    R    ++A  + ++M      PT ++
Sbjct: 350 SQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVST 406

Query: 388 WSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDF 447
           + I+      KE ++ A + + E      + KG  P   + SS+++ +     ++E  ++
Sbjct: 407 YEIMVRMFCNKERLDMAIKIWDE-----MKGKGVLPGMHMFSSLITALCHENKLDEACEY 461

Query: 448 VNSL 451
            N +
Sbjct: 462 FNEM 465


>AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:2958704-2961040
           FORWARD LENGTH=778
          Length = 778

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 4/182 (2%)

Query: 131 QNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQ 189
           Q+  +S   E  +  +++ +V AG +D++   + +M  MG   + + YN ++  Y +  Q
Sbjct: 443 QDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQ 502

Query: 190 HEKVPDVLAMMKED-GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTY 248
            ++  D+L  M ED G+ PD+ SY I ++      D         ++ T G IA   ++Y
Sbjct: 503 IDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRG-IAPTKISY 561

Query: 249 STVANFYVKAGLKDKA-LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQK 307
           +T+   +  +G    A  ++ +   D   K D +A+N ++  Y  LG  +D  R+    K
Sbjct: 562 TTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQRVVSRMK 621

Query: 308 DN 309
           +N
Sbjct: 622 EN 623



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 274 KAYKRDAVAYNHMISHYASLGKKKDMMRL---WKLQKDNCKKQLNREYITMLGCLVKLGD 330
           K +  D+  Y  ++  Y   G+  D  R+    + Q D         Y T++   V  G 
Sbjct: 408 KVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGL 467

Query: 331 LEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV-DKGKTPTPNSWS 389
           ++ A ++L +    G   +    N+LL GY ++  I++AE +LR M  D G  P   S++
Sbjct: 468 MDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYN 527

Query: 390 IIASGHVAKENMEKAFQCFKE 410
           II  G +  ++   A   F E
Sbjct: 528 IIIDGCILIDDSAGALAFFNE 548


>AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:5368034-5369641 FORWARD
           LENGTH=535
          Length = 535

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 7/185 (3%)

Query: 117 IGRVRGLESAESYFQNLSDSDKT----EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV 172
           + R R  +  ES   +L +S       E +   LL  Y +AG  + S+    ++ D G  
Sbjct: 93  LSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVK 152

Query: 173 SPLH-YNNIMSLYTRTEQHEKVPDVLAMMKED-GVSPDIFSYRICLNSYGARSDLENMEK 230
             +   N ++++  + ++ + V  +    KE  G++P+IF+  + + +   ++D+E+  K
Sbjct: 153 RSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYK 212

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           +L++I + G +  + +TY+T+   YV  G  + A   L++  D+ +  DA  Y  ++  Y
Sbjct: 213 VLDEIPSMG-LVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGY 271

Query: 291 ASLGK 295
             LG+
Sbjct: 272 CKLGR 276


>AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:6814521-6816404 FORWARD
           LENGTH=627
          Length = 627

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 16/291 (5%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHY-NNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           L+ C      VD+++     MK+ GF       N+I++L +R  + E      A M    
Sbjct: 161 LVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRME 220

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           +  +++++ I +N       L+  +  L  +E  G I    +TY+T+   +   G  + A
Sbjct: 221 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFG-IKPTIVTYNTLVQGFSLRGRIEGA 279

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK---LQKDNCKKQLNREYITM 321
            + + + + K ++ D   YN ++S   + G+  +++R  K   L  D+         I +
Sbjct: 280 RLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYN-----ILI 334

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
            GC    GDLE A     +    G    F   N L+ G   +  IE AE ++R + +KG 
Sbjct: 335 RGC-SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGI 393

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
                +++I+ +G+    + +KAF    E +       G +P     +S++
Sbjct: 394 VLDSVTYNILINGYCQHGDAKKAFALHDEMMT-----DGIQPTQFTYTSLI 439



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 128/289 (44%), Gaps = 15/289 (5%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           G ++ + +   +M   G V   + YN ++       + E    ++  ++E G+  D  +Y
Sbjct: 341 GDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 400

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCE 272
            I +N Y    D +    L +++ T+G I     TY+++     +     +A    +K  
Sbjct: 401 NILINGYCQHGDAKKAFALHDEMMTDG-IQPTQFTYTSLIYVLCRKNKTREADELFEKVV 459

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVK----L 328
            K  K D V  N ++  + ++G   +M R + L K+     +N + +T   CL++     
Sbjct: 460 GKGMKPDLVMMNTLMDGHCAIG---NMDRAFSLLKEMDMMSINPDDVT-YNCLMRGLCGE 515

Query: 329 GDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSW 388
           G  EEA +L+G+ +  G   D    N L+ GYS+KG  + A  +   M+  G  PT  ++
Sbjct: 516 GKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTY 575

Query: 389 SIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTD 437
           + +  G    +  E A +  +E      +++G  P      S++  +++
Sbjct: 576 NALLKGLSKNQEGELAEELLRE-----MKSEGIVPNDSSFCSVIEAMSN 619



 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 114/250 (45%), Gaps = 15/250 (6%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           +N ++++  +  + +K    L +M+  G+ P I +Y   +  +  R  +E    ++ +++
Sbjct: 228 FNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMK 287

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
           ++G    D  TY+ + ++    G   +A   L++ ++     D+V+YN +I   ++ G  
Sbjct: 288 SKG-FQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNILIRGCSNNG-- 341

Query: 297 KDMMRLWKLQKDNCKKQL---NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
            D+   +  + +  K+ +      Y T++  L     +E AE L+ +    G   D    
Sbjct: 342 -DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 400

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
           NIL+ GY + G  +KA  +   M+  G  PT  +++ +      K    +A + F++ + 
Sbjct: 401 NILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVG 460

Query: 414 VLAENKGWRP 423
                KG +P
Sbjct: 461 -----KGMKP 465


>AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10868400-10870382 REVERSE
           LENGTH=660
          Length = 660

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           Y  +M    + E+ ++   +L  M+ +G SP    Y + ++    + DL  + KL++ + 
Sbjct: 225 YCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMF 284

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
            +G +  + +TY+T+ +     G  DKA+  L++        + V Y  +I+      + 
Sbjct: 285 LKGCVP-NEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343

Query: 297 KDMMRLWKLQKDNCKKQLNRE-YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
            D +RL    ++     LN+  Y  ++  L K G  EEA  L  +    G   +  V ++
Sbjct: 344 TDAVRLLSSMEER-GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSV 402

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           L+ G  R+G   +A+ +L  M+  G  P   ++S +  G       E+A Q +KE
Sbjct: 403 LVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKE 457



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 119/276 (43%), Gaps = 5/276 (1%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMK 201
           +G L+N  V       ++  +  M++ G+    H Y+ ++S   +  + E+   +   M 
Sbjct: 330 YGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA 389

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           E G  P+I  Y + ++           +++L ++   G +  +  TYS++   + K GL 
Sbjct: 390 EKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLP-NAYTYSSLMKGFFKTGLC 448

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
           ++A+   K+ +     R+   Y+ +I     +G+ K+ M +W        K     Y ++
Sbjct: 449 EEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSI 508

Query: 322 LGCLVKLGDLEEAEKLLGQW---ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
           +  L  +G ++ A KL  +    E   +  D    NILL G   +  I +A  +L SM+D
Sbjct: 509 IKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLD 568

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAV 414
           +G  P   + +   +    K N     + F E L V
Sbjct: 569 RGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVV 604


>AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 52/281 (18%)

Query: 130 FQNLSDSDKTEKVHGALL---------------NCYVMAGSVDKSLSQMQKMKDMGF-VS 173
           + NL  +DK  +  GALL                     GS+  + S  + MK  G  + 
Sbjct: 418 YCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLD 477

Query: 174 PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
            + YNN+M  Y +T Q  KV +++  M+  G+SPD+ +Y I ++S   R  ++   +++ 
Sbjct: 478 VVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIIS 537

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
           ++   G +    + ++ V   + K G   +A I      D   K D V  + ++  Y   
Sbjct: 538 ELIRRGFVP-STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGY--- 593

Query: 294 GKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
                           CK Q                 +E+A  L  +   +G   D  + 
Sbjct: 594 ----------------CKAQ----------------RMEKAIVLFNKLLDAGLKPDVVLY 621

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASG 394
           N L+ GY   G IEKA  ++  MV +G  P  ++   +  G
Sbjct: 622 NTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLG 662



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 149/373 (39%), Gaps = 28/373 (7%)

Query: 81  LRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLEL---IGRVRGLESAESYFQNLSDSD 137
           +R RK    AL+++  +   G+ P     R V + L   I RV GLE A  + +++    
Sbjct: 212 IRERK-VNMALKLTYKVDQFGIFP----SRGVCISLLKEILRVHGLELAREFVEHMLS-- 264

Query: 138 KTEKVHGALLNCYVMA----GSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHE 191
           +   ++ A+L+ ++      G  DK    +  MK  G + P  + +   +    +    +
Sbjct: 265 RGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYG-IRPDIVAFTVFIDKLCKAGFLK 323

Query: 192 KVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV 251
           +   VL  +K  G+S D  S    ++ +      E   KL+       +I V    YS+ 
Sbjct: 324 EATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFV----YSSF 379

Query: 252 ANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK-KDMMRLWKLQKDNC 310
            +     G   +A    ++  +     D V Y  MI  Y +LG+  K       L K   
Sbjct: 380 LSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGN 439

Query: 311 KKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
              L    I ++G   + G + +AE +    +  G   D    N L+ GY +   + K  
Sbjct: 440 PPSLTTSTI-LIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVF 498

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
            ++  M   G +P   +++I+    V +  +++A +   E +      +G+ P +   + 
Sbjct: 499 ELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELI-----RRGFVPSTLAFTD 553

Query: 431 ILSWVTDNRDIEE 443
           ++   +   D +E
Sbjct: 554 VIGGFSKRGDFQE 566


>AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 52/281 (18%)

Query: 130 FQNLSDSDKTEKVHGALL---------------NCYVMAGSVDKSLSQMQKMKDMGF-VS 173
           + NL  +DK  +  GALL                     GS+  + S  + MK  G  + 
Sbjct: 418 YCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLD 477

Query: 174 PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
            + YNN+M  Y +T Q  KV +++  M+  G+SPD+ +Y I ++S   R  ++   +++ 
Sbjct: 478 VVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIIS 537

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
           ++   G +    + ++ V   + K G   +A I      D   K D V  + ++  Y   
Sbjct: 538 ELIRRGFVP-STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGY--- 593

Query: 294 GKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVP 353
                           CK Q                 +E+A  L  +   +G   D  + 
Sbjct: 594 ----------------CKAQ----------------RMEKAIVLFNKLLDAGLKPDVVLY 621

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASG 394
           N L+ GY   G IEKA  ++  MV +G  P  ++   +  G
Sbjct: 622 NTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLG 662



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 149/373 (39%), Gaps = 28/373 (7%)

Query: 81  LRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLEL---IGRVRGLESAESYFQNLSDSD 137
           +R RK    AL+++  +   G+ P     R V + L   I RV GLE A  + +++    
Sbjct: 212 IRERK-VNMALKLTYKVDQFGIFP----SRGVCISLLKEILRVHGLELAREFVEHMLS-- 264

Query: 138 KTEKVHGALLNCYVMA----GSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHE 191
           +   ++ A+L+ ++      G  DK    +  MK  G + P  + +   +    +    +
Sbjct: 265 RGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYG-IRPDIVAFTVFIDKLCKAGFLK 323

Query: 192 KVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV 251
           +   VL  +K  G+S D  S    ++ +      E   KL+       +I V    YS+ 
Sbjct: 324 EATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFV----YSSF 379

Query: 252 ANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK-KDMMRLWKLQKDNC 310
            +     G   +A    ++  +     D V Y  MI  Y +LG+  K       L K   
Sbjct: 380 LSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGN 439

Query: 311 KKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
              L    I ++G   + G + +AE +    +  G   D    N L+ GY +   + K  
Sbjct: 440 PPSLTTSTI-LIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVF 498

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
            ++  M   G +P   +++I+    V +  +++A +   E +      +G+ P +   + 
Sbjct: 499 ELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELI-----RRGFVPSTLAFTD 553

Query: 431 ILSWVTDNRDIEE 443
           ++   +   D +E
Sbjct: 554 VIGGFSKRGDFQE 566


>AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:23227574-23229031 FORWARD
           LENGTH=485
          Length = 485

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 103/230 (44%), Gaps = 4/230 (1%)

Query: 175 LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEK 234
           + +  ++ ++ +  +  +   +   M    V PD+F+Y   +N       ++  +++L+ 
Sbjct: 245 ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDL 304

Query: 235 IETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG 294
           + T+G +  D +TY+T+ N + K+   D+     ++   +    D + YN +I  Y   G
Sbjct: 305 MVTKGCLP-DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAG 363

Query: 295 KKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPN 354
           +      ++   + + +  + R Y  +L  L     +E+A  L    + S    D    N
Sbjct: 364 RPDAAQEIF--SRMDSRPNI-RTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 420

Query: 355 ILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           I++ G  + G +E A  + RS+  KG  P   S++ + SG   K   +K+
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKS 470



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/267 (17%), Positives = 115/267 (43%), Gaps = 2/267 (0%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           +  ++NC         +LS + KM   G+    +  +++++ + +  +     D+++ M+
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 166

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           E G  PD+  Y   ++       + +  +L +++E +G +  D +TY+++      +G  
Sbjct: 167 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG-VRADAVTYNSLVAGLCCSGRW 225

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
             A   ++    +    + + +  +I  +   GK  + M+L++     C       Y ++
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 285

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +  L   G ++EA+++L      G   D    N L+ G+ +   +++   + R M  +G 
Sbjct: 286 INGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 345

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCF 408
                +++ I  G+      + A + F
Sbjct: 346 VGDTITYNTIIQGYFQAGRPDAAQEIF 372



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 108/242 (44%), Gaps = 9/242 (3%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           A+++ +V  G   +++   ++M     V P    YN++++      + ++   +L +M  
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 307

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G  PD+ +Y   +N +     ++   KL  ++   G +  D +TY+T+   Y +AG  D
Sbjct: 308 KGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG-DTITYNTIIQGYFQAGRPD 366

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNREYITM 321
            A     + + +   R    Y+ ++       + +  + L++ +QK   +  +    I +
Sbjct: 367 AAQEIFSRMDSRPNIR---TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVI 423

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
            G + K+G++E+A  L       G   D      ++ G+ RK   +K++ + R M + G 
Sbjct: 424 HG-MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482

Query: 382 TP 383
            P
Sbjct: 483 LP 484


>AT5G48730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19763152-19765136 FORWARD
           LENGTH=508
          Length = 508

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 139/344 (40%), Gaps = 47/344 (13%)

Query: 83  TRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSD--KTE 140
           T  R+  A+QV E +  +       G     + ++G+ +  E A   FQ + +       
Sbjct: 126 TALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNH 185

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP-LH-YNNIMSLYTRTEQHEKVPDVLA 198
           +V+ AL++ Y  +G  D + + +++MK      P +H Y+ ++  + +    +KV D+L+
Sbjct: 186 EVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLS 245

Query: 199 MMKEDGVSPDIFSYRICLNSY------------------------------------GAR 222
            M+  G+ P+  +Y   +++Y                                    G  
Sbjct: 246 DMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGN 305

Query: 223 SDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVA 282
             +E ME   EK ++ G I  +  T++ + + Y K+G   K    ++  +   Y    V 
Sbjct: 306 GQIEMMENCYEKFQSSG-IEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVT 364

Query: 283 YNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWE 342
           YN +I  +   G  K M  L++L +    +++    +T+   +   G   +A+K+ G   
Sbjct: 365 YNVVIDAFGRAGDLKQMEYLFRLMQS---ERIFPSCVTLCSLVRAYGRASKADKIGGVLR 421

Query: 343 LSGNT---YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
              N+    D    N L+  Y R     + + +L  M  KG  P
Sbjct: 422 FIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKP 465


>AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:24737719-24739353 FORWARD
           LENGTH=544
          Length = 544

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 173/378 (45%), Gaps = 20/378 (5%)

Query: 136 SDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVP 194
           S  T  V   L+ CY     ++      +++ D GF +S +  N ++   ++++  + V 
Sbjct: 160 SSSTPLVFDLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVW 219

Query: 195 DVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANF 254
            +     +  + P+  + RI +        L+ +  LL++I   G   +  +  +T   F
Sbjct: 220 RIYECAIDKRIYPNEITIRIMIQVLCKEGRLKEVVDLLDRIC--GKRCLPSVIVNTSLVF 277

Query: 255 YVKAGLK-DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQ 313
            V   ++ ++++  LK+   K    D + Y+ ++  YA   K+ D++   K+  +  ++ 
Sbjct: 278 RVLEEMRIEESMSLLKRLLMKNMVVDTIGYSIVV--YAK-AKEGDLVSARKVFDEMLQRG 334

Query: 314 LNRE---YITMLGCLVKLGDLEEAEKLLGQWELSG-NTYDFKVPNILLIGYSRKGLIEKA 369
            +     Y   +    + GD++EAE+LL + E SG + YD +  N L+ G++R G  EK 
Sbjct: 335 FSANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYD-ETFNCLIGGFARFGWEEKG 393

Query: 370 ETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVS 429
                 MV +G  P+ ++++ +       EN+ +A +   +++     +KG+ P     S
Sbjct: 394 LEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSI-----DKGFVPDEHTYS 448

Query: 430 SILSWVTDNRDIEE-VEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDG--VLESMKAD 486
            ++    +  DI++ ++ F     + MS   +++ SLI     CG+   G   L+ MK  
Sbjct: 449 HLIRGFIEGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKR 508

Query: 487 NIELDEEMEEILNSRLQQ 504
            IE + ++ + L    Q+
Sbjct: 509 LIEPNADIYDALIKAFQK 526


>AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:16166444-16168276 FORWARD
           LENGTH=610
          Length = 610

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 106/256 (41%), Gaps = 37/256 (14%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
           V   L+  Y+  G V++     +++ D GF VS +  N++++   + +  E    V ++M
Sbjct: 168 VFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVM 227

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
              G+ P+ +++ I  N +   S+   ++  LEK+E EG                     
Sbjct: 228 CRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEG--------------------- 266

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
                          ++ D V YN ++S Y   G+ K+   L+K+            Y +
Sbjct: 267 ---------------FEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTS 311

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           ++  L K G + EA +   +    G   D    N L+  Y ++G++++++ +L  M+   
Sbjct: 312 LIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNS 371

Query: 381 KTPTPNSWSIIASGHV 396
             P   +  +I  G V
Sbjct: 372 VVPDRFTCKVIVEGFV 387



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 2/214 (0%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           +N + +++       +V D L  M+E+G  PD+ +Y   ++SY  R  L+     L KI 
Sbjct: 239 FNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKE-AFYLYKIM 297

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
               +  D +TY+++     K G   +A     +  D+  K D ++YN +I  Y   G  
Sbjct: 298 YRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMM 357

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
           +   +L      N           ++   V+ G L  A   + +         F+V + L
Sbjct: 358 QQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFL 417

Query: 357 LIGYSRKGLIEKAETML-RSMVDKGKTPTPNSWS 389
           ++   ++G    A+ +L R + ++G    P +++
Sbjct: 418 IVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYN 451


>AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11424006-11426528 FORWARD
           LENGTH=840
          Length = 840

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 52/393 (13%)

Query: 89  QALQVSEWMSSKGLCPILPGDRAVQL--ELIGRVRGLESAESYFQNLSDSD---KTEKVH 143
           +AL++  + +  G+  ++P D   ++   LIG  R ++    +F  L            H
Sbjct: 164 KALEIFVYSTQLGV--VIPQDSVYRMLNSLIGSDR-VDLIADHFDKLCRGGIEPSGVSAH 220

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           G +L+     G V K+L   + + + GF V  +  N ++   +  +Q E    +L+++ +
Sbjct: 221 GFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLS-VDQIEVASRLLSLVLD 279

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G +P++ ++   +N +  R +++    L + +E  G I  D + YST+ + Y KAG+  
Sbjct: 280 CGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRG-IEPDLIAYSTLIDGYFKAGMLG 338

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITML 322
                  +   K  K D V ++  I  Y                                
Sbjct: 339 MGHKLFSQALHKGVKLDVVVFSSTIDVY-------------------------------- 366

Query: 323 GCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKT 382
              VK GDL  A  +  +    G + +     IL+ G  + G I +A  M   ++ +G  
Sbjct: 367 ---VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423

Query: 383 PTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIE 442
           P+  ++S +  G     N+   F  +++ + +     G+ P   +   ++  ++    + 
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKM-----GYPPDVVIYGVLVDGLSKQGLML 478

Query: 443 EVEDF-VNSLKKVMSMNRDMYLSLIKLYVRCGR 474
               F V  L + + +N  ++ SLI  + R  R
Sbjct: 479 HAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNR 511


>AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:4447647-4449200 FORWARD
           LENGTH=517
          Length = 517

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 172 VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKL 231
           +S + YN ++S + +  + EK   + + M + G  PD+ +Y + LN Y   + L+  E +
Sbjct: 218 LSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGV 277

Query: 232 LEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYL-KKCEDKAYKRDAVAYNHMISHY 290
           + ++   G I +D  +Y+ +   + +    DK   ++ K+ E + +  D V+Y+ +I  +
Sbjct: 278 MAEMVRSG-IQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFC-DVVSYSTLIETF 335

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDF 350
                 +   RL++  +          Y +++   ++ G+   A+KLL Q    G + D 
Sbjct: 336 CRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDR 395

Query: 351 KVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
                +L    + G ++KA  +   M++   TP   S++ + SG      + +A + F++
Sbjct: 396 IFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFED 455



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 98/204 (48%), Gaps = 6/204 (2%)

Query: 157 DKSLSQMQK-MKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRIC 215
           DK  + M K M+  GF   + Y+ ++  + R     K   +   M++ G+  ++ +Y   
Sbjct: 307 DKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSL 366

Query: 216 LNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKA 275
           + ++    +    +KLL+++ TE  ++ D + Y+T+ +   K+G  DKA        +  
Sbjct: 367 IKAFLREGNSSVAKKLLDQM-TELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHE 425

Query: 276 YKRDAVAYNHMISHYASLGKKKDMMRLWK--LQKDNCKKQLNREYITMLGCLVKLGDLEE 333
              DA++YN +IS     G+  + ++L++    K+ C  +L  ++I  +G L++   L  
Sbjct: 426 ITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFI--IGGLIRGKKLSA 483

Query: 334 AEKLLGQWELSGNTYDFKVPNILL 357
           A K+  Q    G T D  V + L+
Sbjct: 484 AYKVWDQMMDKGFTLDRDVSDTLI 507


>AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2677122-2679179 REVERSE
           LENGTH=685
          Length = 685

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 152/338 (44%), Gaps = 33/338 (9%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           +LL+ Y  +G ++ +     ++ D   V+   +  + S YT + +H +  D+   M E G
Sbjct: 151 SLLSIYSGSGRLNDAHKLFDEIPDRSVVT---WTALFSGYTTSGRHREAIDLFKKMVEMG 207

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           V PD +     L++     DL++ E +++ +E E ++  +    +T+ N Y K G  +KA
Sbjct: 208 VKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVRTTLVNLYAKCGKMEKA 266

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLG 323
               +   D   ++D V ++ MI  YAS    K+ + L+ ++ ++N K       +  L 
Sbjct: 267 ----RSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD-QFSIVGFLS 321

Query: 324 CLVKLGDLEEAEKLLGQWELS-GNTYDFK----VPNILLIGYSRKGLIEKAETMLRSMVD 378
               LG L+     LG+W +S  + ++F     + N L+  Y++ G + +   + + M +
Sbjct: 322 SCASLGALD-----LGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKE 376

Query: 379 KGKTPTPNSWSIIA-SGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTD 437
           K       + S +A +GHV     + +F  F +      E  G  P       +L     
Sbjct: 377 KDIVIMNAAISGLAKNGHV-----KLSFAVFGQ-----TEKLGISPDGSTFLGLLCGCVH 426

Query: 438 NRDIEEVEDFVNSLKKVMSMNRDM--YLSLIKLYVRCG 473
              I++   F N++  V ++ R +  Y  ++ L+ R G
Sbjct: 427 AGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAG 464


>AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11424006-11426528 FORWARD
           LENGTH=811
          Length = 811

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 52/393 (13%)

Query: 89  QALQVSEWMSSKGLCPILPGDRAVQL--ELIGRVRGLESAESYFQNLSDSD---KTEKVH 143
           +AL++  + +  G+  ++P D   ++   LIG  R ++    +F  L            H
Sbjct: 164 KALEIFVYSTQLGV--VIPQDSVYRMLNSLIGSDR-VDLIADHFDKLCRGGIEPSGVSAH 220

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           G +L+     G V K+L   + + + GF V  +  N ++   +  +Q E    +L+++ +
Sbjct: 221 GFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLS-VDQIEVASRLLSLVLD 279

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G +P++ ++   +N +  R +++    L + +E  G I  D + YST+ + Y KAG+  
Sbjct: 280 CGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRG-IEPDLIAYSTLIDGYFKAGMLG 338

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITML 322
                  +   K  K D V ++  I  Y                                
Sbjct: 339 MGHKLFSQALHKGVKLDVVVFSSTIDVY-------------------------------- 366

Query: 323 GCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKT 382
              VK GDL  A  +  +    G + +     IL+ G  + G I +A  M   ++ +G  
Sbjct: 367 ---VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423

Query: 383 PTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIE 442
           P+  ++S +  G     N+   F  +++ + +     G+ P   +   ++  ++    + 
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKM-----GYPPDVVIYGVLVDGLSKQGLML 478

Query: 443 EVEDF-VNSLKKVMSMNRDMYLSLIKLYVRCGR 474
               F V  L + + +N  ++ SLI  + R  R
Sbjct: 479 HAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNR 511



 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLN-SYGARSDLENMEK----- 230
           +N+++  + R  + ++   V  +M   G+ PD+ ++   +  S    +  ++M+      
Sbjct: 499 FNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQ 558

Query: 231 ---LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMI 287
              L+++ +   DIAV     + V +   K    + A  +     +   + D V YN MI
Sbjct: 559 LFDLMQRNKISADIAV----CNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMI 614

Query: 288 SHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
             Y SL +  +  R+++L K             ++  L K  D++ A ++       G+ 
Sbjct: 615 CGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSK 674

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            +      L+  +S+   IE +  +   M +KG +P+  S+SII  G   +  +++A   
Sbjct: 675 PNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNI 734

Query: 408 FKEAL 412
           F +A+
Sbjct: 735 FHQAI 739


>AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7029701-7031314 FORWARD
           LENGTH=537
          Length = 537

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 110/240 (45%), Gaps = 8/240 (3%)

Query: 240 DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDM 299
           ++ +   T++ +   YV+AGL  +A+    + ED     D +A++ +IS+ +   +  + 
Sbjct: 181 NVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEA 240

Query: 300 MRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIG 359
              +   KD  +  +   Y  ++    + G++ EAEK+  + +L+G   +    +I++  
Sbjct: 241 QSFFDSLKDRFEPDV-IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDA 299

Query: 360 YSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENK 419
             R G I +A  +   M+D G  P   +++ +   HV     EK  Q + +      +  
Sbjct: 300 LCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQ-----MKKL 354

Query: 420 GWRPKSDVVSSILSWVTDNRDIEEVEDFVNS-LKKVMSMNRDMYLSLIKLYVRCGREVDG 478
           G  P +   + ++     + ++E     +N+ +KK   +N   + ++ + Y+   R+V+G
Sbjct: 355 GCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFR-YIEKKRDVNG 413



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 115/272 (42%), Gaps = 7/272 (2%)

Query: 119 RVRGLESAESYFQ--NLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPL 175
           R   +  AE  F+   L+  +     +  +++     G + ++      M D G   + +
Sbjct: 267 RAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAI 326

Query: 176 HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKI 235
            +NN+M ++ +  + EKV  V   MK+ G  PD  +Y   + ++    +LEN  K+L  +
Sbjct: 327 TFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTM 386

Query: 236 ETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK 295
             +    V+  T++T+  +  K    + A     K  +   + + V YN ++  +    K
Sbjct: 387 -IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVG-SK 444

Query: 296 KKDMMRLWKLQKDNCKKQLN-REYITMLGCLVKLGDLEEAEKLLGQW-ELSGNTYDFKVP 353
             DM+   K + D+ + + N   Y  ++     +G    A KL  +  E    T    + 
Sbjct: 445 STDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLY 504

Query: 354 NILLIGYSRKGLIEKAETMLRSMVDKGKTPTP 385
            ++L    R G ++K E ++  M+ KG    P
Sbjct: 505 EMVLAQLRRAGQLKKHEELVEKMIQKGLVARP 536



 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/279 (18%), Positives = 119/279 (42%), Gaps = 13/279 (4%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           Y N++  + R  +  +   V   MK  G+ P++++Y I +++      +     +   + 
Sbjct: 258 YTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADML 317

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMI-SHYASLGK 295
             G  A + +T++ +   +VKAG  +K L    + +    + D + YN +I +H      
Sbjct: 318 DSG-CAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENL 376

Query: 296 KKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL---LGQWELSGNTYDFKV 352
           +  +  L  + K  C+   +  + T+   + K  D+  A ++   + + +   NT  + +
Sbjct: 377 ENAVKVLNTMIKKKCEVNAS-TFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNI 435

Query: 353 PNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL 412
              + +G     ++ K   M + M DK   P  N++ ++ +      +   A++ FKE  
Sbjct: 436 LMRMFVGSKSTDMVLK---MKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKE-- 490

Query: 413 AVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
             + E K   P   +   +L+ +     +++ E+ V  +
Sbjct: 491 --MVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527


>AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 134/308 (43%), Gaps = 9/308 (2%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS 136
           + KT    K+F  A      M   G  P +    A    L+G+ R ++ A  +++ +   
Sbjct: 174 LFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGR-VDIALRFYREMRRC 232

Query: 137 DKTEKVH--GALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKV 193
             +   +    +++ Y  +G +DK +  +Q M+ +GF  + + YN +++ +         
Sbjct: 233 KISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSA 292

Query: 194 PDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVAN 253
             +  MM + G+ P++ ++   ++ +     L+   K+  +++   ++A + +TY+T+ N
Sbjct: 293 LKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV-NVAPNTVTYNTLIN 351

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKK 312
            Y + G  + A  + +       +RD + YN +I       K +   +  K L K+N   
Sbjct: 352 GYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVP 411

Query: 313 QLNREYITMLG-CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAET 371
             +     ++G C+ K  D     +L      SG   + +  N+L+  + R    + A  
Sbjct: 412 NSSTFSALIMGQCVRKNAD--RGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQ 469

Query: 372 MLRSMVDK 379
           +LR MV +
Sbjct: 470 VLREMVRR 477



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 173/433 (39%), Gaps = 61/433 (14%)

Query: 81  LRTRKRFTQALQVSEWMSSKGLCPILPGDR-----AVQLELIGRVRGLESAESYFQNL-- 133
           L+ +K +  +L+   W  ++      PG       A+ L  + + R  +SAES  +++  
Sbjct: 89  LKIQKDYLLSLEFFNWAKTRN-----PGSHSLETHAIVLHTLTKNRKFKSAESILRDVLV 143

Query: 134 -SDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEK 192
               D   KV  ALL  Y    S                 +P  ++++   +   ++   
Sbjct: 144 NGGVDLPAKVFDALLYSYRECDS-----------------TPRVFDSLFKTFAHLKKFRN 186

Query: 193 VPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVA 252
             D    MK+ G  P + S    ++S   +  ++   +   ++     I+ +  T + V 
Sbjct: 187 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR-RCKISPNPYTLNMVM 245

Query: 253 NFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG------KKKDMMRLWKLQ 306
           + Y ++G  DK +  L+  E   ++   V+YN +I+ +   G      K K+MM    LQ
Sbjct: 246 SGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQ 305

Query: 307 KDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWE---LSGNTYDFKVPNILLIGYSRK 363
            +         + T++    +   L+EA K+ G+ +   ++ NT  +   N L+ GYS++
Sbjct: 306 PNVV------TFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTY---NTLINGYSQQ 356

Query: 364 GLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRP 423
           G  E A      MV  G      +++ +  G   +    KA Q  KE      + +   P
Sbjct: 357 GDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKE-----LDKENLVP 411

Query: 424 KSDVVSSIL--SWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDG--- 478
            S   S+++    V  N D    E + + ++     N   +  L+  + R   + DG   
Sbjct: 412 NSSTFSALIMGQCVRKNAD-RGFELYKSMIRSGCHPNEQTFNMLVSAFCR-NEDFDGASQ 469

Query: 479 VLESMKADNIELD 491
           VL  M   +I LD
Sbjct: 470 VLREMVRRSIPLD 482


>AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 134/308 (43%), Gaps = 9/308 (2%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS 136
           + KT    K+F  A      M   G  P +    A    L+G+ R ++ A  +++ +   
Sbjct: 174 LFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGR-VDIALRFYREMRRC 232

Query: 137 DKTEKVH--GALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKV 193
             +   +    +++ Y  +G +DK +  +Q M+ +GF  + + YN +++ +         
Sbjct: 233 KISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSA 292

Query: 194 PDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVAN 253
             +  MM + G+ P++ ++   ++ +     L+   K+  +++   ++A + +TY+T+ N
Sbjct: 293 LKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV-NVAPNTVTYNTLIN 351

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKK 312
            Y + G  + A  + +       +RD + YN +I       K +   +  K L K+N   
Sbjct: 352 GYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVP 411

Query: 313 QLNREYITMLG-CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAET 371
             +     ++G C+ K  D     +L      SG   + +  N+L+  + R    + A  
Sbjct: 412 NSSTFSALIMGQCVRKNAD--RGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQ 469

Query: 372 MLRSMVDK 379
           +LR MV +
Sbjct: 470 VLREMVRR 477



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 173/433 (39%), Gaps = 61/433 (14%)

Query: 81  LRTRKRFTQALQVSEWMSSKGLCPILPGDR-----AVQLELIGRVRGLESAESYFQNL-- 133
           L+ +K +  +L+   W  ++      PG       A+ L  + + R  +SAES  +++  
Sbjct: 89  LKIQKDYLLSLEFFNWAKTRN-----PGSHSLETHAIVLHTLTKNRKFKSAESILRDVLV 143

Query: 134 -SDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEK 192
               D   KV  ALL  Y    S                 +P  ++++   +   ++   
Sbjct: 144 NGGVDLPAKVFDALLYSYRECDS-----------------TPRVFDSLFKTFAHLKKFRN 186

Query: 193 VPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVA 252
             D    MK+ G  P + S    ++S   +  ++   +   ++     I+ +  T + V 
Sbjct: 187 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR-RCKISPNPYTLNMVM 245

Query: 253 NFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLG------KKKDMMRLWKLQ 306
           + Y ++G  DK +  L+  E   ++   V+YN +I+ +   G      K K+MM    LQ
Sbjct: 246 SGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQ 305

Query: 307 KDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWE---LSGNTYDFKVPNILLIGYSRK 363
            +         + T++    +   L+EA K+ G+ +   ++ NT  +   N L+ GYS++
Sbjct: 306 PNVV------TFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTY---NTLINGYSQQ 356

Query: 364 GLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRP 423
           G  E A      MV  G      +++ +  G   +    KA Q  KE      + +   P
Sbjct: 357 GDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKE-----LDKENLVP 411

Query: 424 KSDVVSSIL--SWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDG--- 478
            S   S+++    V  N D    E + + ++     N   +  L+  + R   + DG   
Sbjct: 412 NSSTFSALIMGQCVRKNAD-RGFELYKSMIRSGCHPNEQTFNMLVSAFCR-NEDFDGASQ 469

Query: 479 VLESMKADNIELD 491
           VL  M   +I LD
Sbjct: 470 VLREMVRRSIPLD 482


>AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr3:5656371-5658335 REVERSE LENGTH=654
          Length = 654

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 12/243 (4%)

Query: 172 VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKL 231
           ++P+ ++ ++  Y   +  EK  D+   M   GV P  ++Y   L +      +++  KL
Sbjct: 66  INPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDD-GKL 124

Query: 232 LEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYA 291
           +       D A D    + + +FY K G  + A+    K  D+  KRD VA+N MIS ++
Sbjct: 125 IHSHVNCSDFATDMYVCTALVDFYAKCGELEMAI----KVFDEMPKRDMVAWNAMISGFS 180

Query: 292 SLGKKKDMMRLWKLQK--DNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYD 349
                 D++ L+   +  D     L+   + M   L + G L E + + G     G + D
Sbjct: 181 LHCCLTDVIGLFLDMRRIDGLSPNLS-TIVGMFPALGRAGALREGKAVHGYCTRMGFSND 239

Query: 350 FKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
             V   +L  Y++   I  A    R + D        +WS +  G+V  E +++A + F 
Sbjct: 240 LVVKTGILDVYAKSKCIIYA----RRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFF 295

Query: 410 EAL 412
           + L
Sbjct: 296 QML 298


>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:6204940-6209691 REVERSE
           LENGTH=1440
          Length = 1440

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 113/273 (41%), Gaps = 44/273 (16%)

Query: 177 YNNIMSLYTRTEQHEK-------------VPDVLA------------------------M 199
           YN +M +Y+R+ +  K             VPD+++                        M
Sbjct: 228 YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDM 287

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           ++  G+ PD  +Y   L++    S+L+   K+ E +E       D  TY+ + + Y + G
Sbjct: 288 VRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH-RCQPDLWTYNAMISVYGRCG 346

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREY 318
           L  +A     + E K +  DAV YN ++  +A     + +  ++ ++QK    K     Y
Sbjct: 347 LAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKD-EMTY 405

Query: 319 ITMLGCLVKLGDLEEAEKLLGQWE-LSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
            T++    K G L+ A +L    + LSG   D     +L+    +     +A  ++  M+
Sbjct: 406 NTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEML 465

Query: 378 DKGKTPTPNSWSIIASGHV---AKENMEKAFQC 407
           D G  PT  ++S +  G+     +E  E  F C
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSC 498



 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 132/309 (42%), Gaps = 17/309 (5%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
            + A+++ Y   G   ++     +++  GF    + YN+++  + R    EKV +V   M
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
           ++ G   D  +Y   ++ YG +  L+   +L + ++       D +TY+ + +   KA  
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
             +A   + +  D   K     Y+ +I  YA  GK+++    +     +  K  N  Y  
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK- 379
           ML  L++  +  +A  L       G+T  + +  ++++G  ++   +  +  +R M +  
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVL--AENKGWRPKSDVVSSIL-SWVT 436
           G  P   S S++  G           +CF  A   L  A   G+  ++D + SIL S+ +
Sbjct: 574 GMNPLEIS-SVLVKG-----------ECFDLAARQLKVAITNGYELENDTLLSILGSYSS 621

Query: 437 DNRDIEEVE 445
             R  E  E
Sbjct: 622 SGRHSEAFE 630


>AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:29071983-29073536 REVERSE
           LENGTH=517
          Length = 517

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 120/305 (39%), Gaps = 44/305 (14%)

Query: 150 YVMAGSVDKSLSQMQKMKDMGFVSPL-HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPD 208
           Y  A  VD+++     M+       L  +N ++S   +++   K  +V   M+ D  +PD
Sbjct: 178 YARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR-DRFTPD 236

Query: 209 IFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYL 268
             +Y I L  +G   +L    ++  ++   G    D +TYS + +   KAG  D+AL  +
Sbjct: 237 SKTYSILLEGWGKEPNLPKAREVFREMIDAG-CHPDIVTYSIMVDILCKAGRVDEALGIV 295

Query: 269 KKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKL 328
           +  +    K     Y+ ++  Y +  +                                 
Sbjct: 296 RSMDPSICKPTTFIYSVLVHTYGTENR--------------------------------- 322

Query: 329 GDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSW 388
             LEEA     + E SG   D  V N L+  + +   ++    +L+ M  KG TP   S 
Sbjct: 323 --LEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSC 380

Query: 389 SIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFV 448
           +II    + +   ++AF  F++ + V        P +D  + ++    + +++E  +   
Sbjct: 381 NIILRHLIERGEKDEAFDVFRKMIKVC------EPDADTYTMVIKMFCEKKEMETADKVW 434

Query: 449 NSLKK 453
             ++K
Sbjct: 435 KYMRK 439


>AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4772881-4775697 REVERSE
           LENGTH=938
          Length = 938

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 126/280 (45%), Gaps = 17/280 (6%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M   G  PD+ ++   +N       +     LL ++E E  +  + +TY+T+ +   KA 
Sbjct: 250 MVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREME-EMSVYPNHVTYTTLVDSLFKAN 308

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
           +   AL    +   +    D V Y  ++      G  ++  + +K+  ++ +      Y 
Sbjct: 309 IYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYT 368

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI-----LLIGYSRKGLIEKAETMLR 374
            ++  L K GDL  AE ++ Q  L  +     +PN+     ++ GY +KG++E+A ++LR
Sbjct: 369 ALVDGLCKAGDLSSAEFIITQM-LEKSV----IPNVVTYSSMINGYVKKGMLEEAVSLLR 423

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSW 434
            M D+   P   ++  +  G       E A +  KE   +  E   +     ++ ++++ 
Sbjct: 424 KMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNY-----ILDALVNH 478

Query: 435 VTDNRDIEEVEDFVNSL-KKVMSMNRDMYLSLIKLYVRCG 473
           +     I+EV+  V  +  K +++++  Y SLI ++ + G
Sbjct: 479 LKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGG 518



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 93/195 (47%), Gaps = 10/195 (5%)

Query: 139 TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVL 197
           + +V+  L+      G   K+   M  M+  GF+   + +N++M  Y       K     
Sbjct: 677 SRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTY 736

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
           ++M E G+SP++ +Y   +        ++ ++K L ++++ G +  D  TY+ + +   K
Sbjct: 737 SVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRG-MRPDDFTYNALISGQAK 795

Query: 258 AG-LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN- 315
            G +K    IY +   D    + +  YN +IS +A++GK   M++  +L K+  K+ ++ 
Sbjct: 796 IGNMKGSMTIYCEMIADGLVPKTS-TYNVLISEFANVGK---MLQARELLKEMGKRGVSP 851

Query: 316 --REYITMLGCLVKL 328
               Y TM+  L KL
Sbjct: 852 NTSTYCTMISGLCKL 866



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 3/196 (1%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M+E G+ PDI ++ I +NS   + D E + KL +K+++ G I    M+ + V     + G
Sbjct: 564 MREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCG-IKPSLMSCNIVVGMLCENG 622

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE-Y 318
             ++A+  L +        +   Y   +   +S  K+ D +        +   +L+R+ Y
Sbjct: 623 KMEEAIHILNQMMLMEIHPNLTTYRIFLDT-SSKHKRADAIFKTHETLLSYGIKLSRQVY 681

Query: 319 ITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
            T++  L KLG  ++A  ++G  E  G   D    N L+ GY     + KA +    M++
Sbjct: 682 NTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMME 741

Query: 379 KGKTPTPNSWSIIASG 394
            G +P   +++ I  G
Sbjct: 742 AGISPNVATYNTIIRG 757


>AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:11254025-11255737 REVERSE
           LENGTH=570
          Length = 570

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 144/336 (42%), Gaps = 52/336 (15%)

Query: 173 SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLL 232
           S L YN ++      +   KV  +   ++  G+ PD F+  + L S G    +   EK +
Sbjct: 10  SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEK-V 68

Query: 233 EKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS 292
                +  +  D    +++   Y   G     +    K  D+  +RD V++N +IS Y  
Sbjct: 69  HGYAVKAGLEFDSYVSNSLMGMYASLG----KIEITHKVFDEMPQRDVVSWNGLISSYVG 124

Query: 293 LGKKKDMMRLWKL--QKDNCKKQLNREYITMLGCLVKLGDLEEAEKL----LGQWELSGN 346
            G+ +D + ++K   Q+ N K        T+  C   L +LE  E++    + ++E+S  
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSAC-SALKNLEIGERIYRFVVTEFEMS-- 181

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA-- 404
               ++ N L+  + + G ++KA  +  SM DK        W+ +  G+V+   +++A  
Sbjct: 182 ---VRIGNALVDMFCKCGCLDKARAVFDSMRDK----NVKCWTSMVFGYVSTGRIDEARV 234

Query: 405 ----------------------FQCFKEALAVL--AENKGWRPKSDVVSSILSWVTDNRD 440
                                 F  F EAL +    +  G RP + V+ S+L+       
Sbjct: 235 LFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGA 294

Query: 441 IEE---VEDFVNSLKKVMSMNRDMYLSLIKLYVRCG 473
           +E+   +  ++N  +  +++++ +  +L+ +Y +CG
Sbjct: 295 LEQGKWIHGYINENR--VTVDKVVGTALVDMYAKCG 328


>AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29920334-29922676 REVERSE
           LENGTH=780
          Length = 780

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 176/414 (42%), Gaps = 65/414 (15%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAES----YFQN 132
           ++  L  + R + A ++ + M+ +G+ P    +R     LI  +    SA+     +++ 
Sbjct: 204 LMDGLYKKGRTSDAQKMFDDMTGRGISP----NRVTYTILISGLCQRGSADDARKLFYEM 259

Query: 133 LSDSDKTEKV-HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQH 190
            +  +  + V H ALL+ +   G + ++   ++  +  GFV  L  Y++++    R  ++
Sbjct: 260 QTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRY 319

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYST 250
            +  ++ A M +  + PDI  Y I +        +E+  KLL  + ++G I+ D   Y+ 
Sbjct: 320 TQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKG-ISPDTYCYNA 378

Query: 251 VANFYVKAGLKDKAL-IYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKD 308
           V       GL ++   + L+  E +++  DA  +  +I      G  ++   ++ +++K 
Sbjct: 379 VIKALCGRGLLEEGRSLQLEMSETESFP-DACTHTILICSMCRNGLVREAEEIFTEIEKS 437

Query: 309 NCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWEL------------------------- 343
            C   +   +  ++  L K G+L+EA  LL + E+                         
Sbjct: 438 GCSPSVA-TFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESG 496

Query: 344 --------------SGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWS 389
                         +G++ D    N+L+ G+ R G I+ A  +L  +  KG +P   +++
Sbjct: 497 SILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYN 556

Query: 390 IIASG--HVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
            + +G   V +E  E+AF+ F            +R    V  S+++W    R +
Sbjct: 557 TLINGLHRVGRE--EEAFKLF-------YAKDDFRHSPAVYRSLMTWSCRKRKV 601



 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 14/260 (5%)

Query: 197 LAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYV 256
           LA   + G SPDI SY + +N +    D++   KLL  ++ +G ++ D +TY+T+ N   
Sbjct: 505 LAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKG-LSPDSVTYNTLINGLH 563

Query: 257 KAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK--LQKDNCKKQL 314
           + G +++A       +D  ++     Y  +++      K      LW   L+K +C   L
Sbjct: 564 RVGREEEAFKLFYAKDD--FRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISC---L 618

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
           + E    +    K G+ E A + L + +   +        I LIG  + G   +A  +  
Sbjct: 619 DDETANEIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFS 678

Query: 375 SMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSW 434
            + +K    TP S   +  G   +E ++ A + F   L  L  N    P+  V + +LS 
Sbjct: 679 VLREKKILVTPPSCVKLIHGLCKREQLDAAIEVF---LYTLDNNFKLMPR--VCNYLLSS 733

Query: 435 VTDNRD-IEEVEDFVNSLKK 453
           + ++ + +E V    N +++
Sbjct: 734 LLESTEKMEIVSQLTNRMER 753


>AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4954080-4955702 FORWARD
           LENGTH=540
          Length = 540

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 30/298 (10%)

Query: 180 IMSLYTRTEQHEKVPDVLAMMKED---GVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           + S++    + +   DVL + ++    G+ PD FS+ + + S G    L   + L+EK+ 
Sbjct: 74  VNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGIL--FQALVEKLG 131

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
              D  V     + + + YVK    + A    +K  D+  +R    +N MIS Y   G K
Sbjct: 132 FFKDPYVR----NVIMDMYVKHESVESA----RKVFDQISQRKGSDWNVMISGYWKWGNK 183

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQW-ELSGNTYDFKVPNI 355
           ++  +L+ +  +N        +  M+    K+ DLE A K   +  E S  ++     N 
Sbjct: 184 EEACKLFDMMPENDVV----SWTVMITGFAKVKDLENARKYFDRMPEKSVVSW-----NA 234

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVL 415
           +L GY++ G  E A  +   M+  G  P   +W I+ S    + +          +L  L
Sbjct: 235 MLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRAD-----PSLTRSLVKL 289

Query: 416 AENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCG 473
            + K  R    V +++L      RDI+      N L      N   + ++I  Y R G
Sbjct: 290 IDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGT--QRNLVTWNAMISGYTRIG 345


>AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23451144-23452201 FORWARD
           LENGTH=323
          Length = 323

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 111/287 (38%), Gaps = 45/287 (15%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M E G  PD+ ++   +N       +     L++++  EG        Y T+ N   K G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEG-----HQPYGTIINGLCKMG 55

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW---------------- 303
             + AL  L K E+   K   V YN +I      G       L+                
Sbjct: 56  DTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 304 ----------------KLQKDNCKKQLNREYIT---MLGCLVKLGDLEEAEKLLGQWELS 344
                           +L +D  ++Q+N + +T   ++  LVK G + EAE++ G     
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           G        N ++ G+ ++  +  A+ ML SM  K  +P   ++S + +G+   + ++  
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNG 235

Query: 405 FQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
            + F E        +G    +   ++++       D++  +D +N +
Sbjct: 236 MEIFCE-----MHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVM 277



 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 111/265 (41%), Gaps = 4/265 (1%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           +G ++N     G  + +L+ + KM++       + YN I+    +   H    ++   M 
Sbjct: 44  YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMH 103

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           + G+ PD+ +Y   ++S+       + E+LL  +  E  I  D +T+S + N  VK G  
Sbjct: 104 DKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDM-IERQINPDVVTFSALINALVKEGKV 162

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYIT 320
            +A         +      + YN MI  +    +  D  R+   +   +C   +   + T
Sbjct: 163 SEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDV-VTFST 221

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
           ++    K   ++   ++  +    G   +      L+ G+ + G ++ A+ +L  M+  G
Sbjct: 222 LINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSG 281

Query: 381 KTPTPNSWSIIASGHVAKENMEKAF 405
             P   ++  + +   +K+ + KAF
Sbjct: 282 VAPNYITFQSMLASLCSKKELRKAF 306


>AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7312262-7314493 REVERSE
           LENGTH=743
          Length = 743

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 33/289 (11%)

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G SPDI +Y   + +Y    DL    +++ ++  +G I ++ +T +T+ +   K    D+
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKG-IKMNTITLNTILDALCKERKLDE 469

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLG 323
           A   L     + +  D V Y  +I  +    K +  + +W   K          + +++G
Sbjct: 470 AHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIG 529

Query: 324 CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
            L   G  E A +   +   SG   D    N +++GY ++G +EKA       +     P
Sbjct: 530 GLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKP 589

Query: 384 TPNSWSIIASGHVAKENM-EKAFQCF---------------------------KEALAVL 415
              + +I+ +G + KE M EKA   F                           KEA  +L
Sbjct: 590 DNYTCNILLNG-LCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLL 648

Query: 416 A--ENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLK-KVMSMNRDM 461
           +  E KG  P     +S +S + ++  + E ++ +     K  SM RD+
Sbjct: 649 SEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRDL 697



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 134/324 (41%), Gaps = 49/324 (15%)

Query: 166 MKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSY----G 220
           MK  G V + + YNN++  Y +    ++   ++ +MK+  V PD+ +Y I +N       
Sbjct: 266 MKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGS 325

Query: 221 ARSDLENME-------------------------------KLLEKIETEGDIAVDWMTYS 249
            R  LE M+                               KL+E++E +G +  + +T++
Sbjct: 326 MREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDG-VKANQVTHN 384

Query: 250 TVANFYVKAGLKDKALIYLKKCED-KAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKD 308
               +  K   ++     +K+  D   +  D V Y+ +I  Y  +G   D+    ++ ++
Sbjct: 385 ISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVG---DLSGALEMMRE 441

Query: 309 NCKKQLNREYITM---LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGL 365
             +K +    IT+   L  L K   L+EA  LL      G   D      L++G+ R+  
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEK 501

Query: 366 IEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKS 425
           +EKA  M   M     TPT ++++ +  G       E A + F E    LAE+ G  P  
Sbjct: 502 VEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDE----LAES-GLLPDD 556

Query: 426 DVVSSILSWVTDNRDIEEVEDFVN 449
              +SI+        +E+  +F N
Sbjct: 557 STFNSIILGYCKEGRVEKAFEFYN 580



 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 140/350 (40%), Gaps = 51/350 (14%)

Query: 147 LNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSL----YTRTEQHEKVPDVLAMMKE 202
           L+ Y+  G    +L   QKM  +     L   N + +    Y  +       +V   M +
Sbjct: 138 LSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVK 197

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG-LK 261
            GVS ++ ++ + +N Y     LE+   +LE++ +E  +  D +TY+T+     K G L 
Sbjct: 198 IGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLS 257

Query: 262 D--KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDN---------- 309
           D  + L+ +KK        + V YN+++  Y  LG  K+  ++ +L K            
Sbjct: 258 DLKELLLDMKK---NGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYN 314

Query: 310 ------CKKQLNRE-------------------YITMLGCLVKLGDLEEAEKLLGQWELS 344
                 C     RE                   Y T++    +LG   EA KL+ Q E  
Sbjct: 315 ILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMEND 374

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD-KGKTPTPNSWSIIASGHVAKENMEK 403
           G   +    NI L    ++   E     ++ +VD  G +P   ++  +   ++   ++  
Sbjct: 375 GVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSG 434

Query: 404 AFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKK 453
           A +  +E        KG +  +  +++IL  +   R ++E  + +NS  K
Sbjct: 435 ALEMMRE-----MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHK 479


>AT1G55890.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:20901364-20902560 FORWARD
           LENGTH=398
          Length = 398

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 10/262 (3%)

Query: 156 VDKSLSQMQKMKDM---GFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           V++ L + +K +DM   GF +      I+SLY +    E    V   M        + S+
Sbjct: 93  VEEILEEQKKYRDMSKEGFAA-----RIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSF 147

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCE 272
              L++Y      + +E+L  ++  +  I  D ++Y+T+     +     +A+  L + E
Sbjct: 148 NALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIE 207

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDL 331
           +K  K D V +N ++      G+ +    +W K+ + N    + R Y   L  L      
Sbjct: 208 NKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDI-RTYNARLLGLANEAKS 266

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           +E   L G+ + SG   D    N ++ G   +G +++AE   + +V  G  P   +++++
Sbjct: 267 KELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPDKATFALL 326

Query: 392 ASGHVAKENMEKAFQCFKEALA 413
                   + E A + FKE  +
Sbjct: 327 LPAMCKAGDFESAIELFKETFS 348


>AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29900617-29903127 FORWARD
           LENGTH=836
          Length = 836

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/394 (19%), Positives = 155/394 (39%), Gaps = 53/394 (13%)

Query: 57  PVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDR--AVQL 114
           P LE  L +   V +  +  I ++L+  K    AL +  W   +     LP D    V  
Sbjct: 157 PELETQLDKLQFVPN--MVHITQSLKIVKEVDAALSLFRWAKKQPW--YLPSDECYVVLF 212

Query: 115 ELIGRVRGLESAESYFQNL-----SDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDM 169
           + + + R     +S F+ +     S  D +   +  ++     A  ++ +    +K ++ 
Sbjct: 213 DGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQES 272

Query: 170 GF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENM 228
           G  +    YNN+M L+       K  ++   M++     D  +Y + + S      L+  
Sbjct: 273 GCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAA 332

Query: 229 EKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
            KL ++++ E  +   +  +S++ +   KAG  D ++    + +   ++  A  +  +I 
Sbjct: 333 FKLFQQMK-ERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLID 391

Query: 289 HYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTY 348
            YA  GK    +RLW    D  KK                               SG   
Sbjct: 392 SYAKAGKLDTALRLW----DEMKK-------------------------------SGFRP 416

Query: 349 DFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCF 408
           +F +  +++  +++ G +E A T+ + M   G  PTP+++S +   H     ++ A + +
Sbjct: 417 NFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIY 476

Query: 409 KEALAVLAENKGWRPKSDVVSSILSWVTDNRDIE 442
                    N G RP      S+L+ + + R ++
Sbjct: 477 NS-----MTNAGLRPGLSSYISLLTLLANKRLVD 505


>AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:18527680-18530007 FORWARD
           LENGTH=775
          Length = 775

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 34/299 (11%)

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKD----MGFVSP------------LHYNNIMSLYTRT 187
           G  L+CYV+  S+D ++S +  + D    MG ++             + +N +++ Y   
Sbjct: 452 GKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHC 511

Query: 188 EQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMT 247
           EQ EK   +   M  +   P   +    L +      LE   +++ +  TE +  ++   
Sbjct: 512 EQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLER-GQMIHRYITETEHEMNLSL 570

Query: 248 YSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQK 307
            + + + Y K G  +K+    ++  D   ++DAV +N MIS Y   G  +  + L+   +
Sbjct: 571 SAALIDMYAKCGHLEKS----RELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQME 626

Query: 308 DNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI-----LLIGYSR 362
           ++  K     ++ +L      G +E+ +KL     L  + YD K PN+     L+   SR
Sbjct: 627 ESDVKPTGPTFLALLSACTHAGLVEQGKKLF----LKMHQYDVK-PNLKHYSCLVDLLSR 681

Query: 363 KGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGW 421
            G +E+AE+ + SM     +P    W  + S  +     E   +  + A+A   +N G+
Sbjct: 682 SGNLEEAESTVMSMP---FSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGY 737


>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1181560-1183452 FORWARD
           LENGTH=630
          Length = 630

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 141/338 (41%), Gaps = 26/338 (7%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
            L+N YV    ++ +     +M     +S   +  ++S Y++ + H+K  ++L +M  D 
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVIS---WTTMISAYSKCKIHQKALELLVLMLRDN 157

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           V P++++Y   L S    SD+  +   + K   E D+ V     S + + + K G  + A
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVR----SALIDVFAKLGEPEDA 213

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGC 324
           L       D+    DA+ +N +I  +A   +    + L+K  K   +     E  T+   
Sbjct: 214 LSVF----DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK---RAGFIAEQATLTSV 266

Query: 325 LVKLGDLEEAE-KLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
           L     L   E  +     +     D  + N L+  Y + G +E A  +   M ++    
Sbjct: 267 LRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVI- 325

Query: 384 TPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEE 443
              +WS + SG       ++A + F+       ++ G +P    +  +L   +    +E+
Sbjct: 326 ---TWSTMISGLAQNGYSQEALKLFER-----MKSSGTKPNYITIVGVLFACSHAGLLED 377

Query: 444 VEDFVNSLKKVMSMN--RDMYLSLIKLYVRCGREVDGV 479
              +  S+KK+  ++  R+ Y  +I L  + G+  D V
Sbjct: 378 GWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAV 415


>AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:1956658-1958240
           REVERSE LENGTH=486
          Length = 486

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 10/295 (3%)

Query: 81  LRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS--DK 138
           L  +K++ QAL+V + +  +       G     L L+G+      A+  F  + +   + 
Sbjct: 98  LIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEP 157

Query: 139 TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDV 196
           T +++ ALL  Y  +  +D + S + KMK      P    Y+ ++       Q + V  +
Sbjct: 158 TVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSL 217

Query: 197 LAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYV 256
              M E  ++P+  +  I L+ YG     + MEK+L  +        D  T + + + + 
Sbjct: 218 YKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFG 277

Query: 257 KAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQL-- 314
             G  D    + +K  +   + +   +N +I  Y   GKK+   ++  + +   K +   
Sbjct: 278 NMGKIDMMESWYEKFRNFGIEPETRTFNILIGSY---GKKRMYDKMSSVMEYMRKLEFPW 334

Query: 315 -NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEK 368
               Y  ++     +GD +  E    Q    G   D K    L+ GY+  GL  K
Sbjct: 335 TTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHK 389


>AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7674420-7675811 FORWARD
           LENGTH=463
          Length = 463

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 106/237 (44%), Gaps = 2/237 (0%)

Query: 187 TEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWM 246
           T + ++  D++  + E    PD ++Y   L       DL  + + ++++  + D+  D +
Sbjct: 172 TGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLV 231

Query: 247 TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQ 306
           +++ + +    +    +A+  + K  +  +K D   YN ++  + +L K  + + ++K  
Sbjct: 232 SFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM 291

Query: 307 KDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLI 366
           K+   +     Y T++  L K G +EEA   L     +G   D      L+ G  RKG  
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351

Query: 367 EKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK--EALAVLAENKGW 421
             A ++L  M  +G  P   +++ +  G      M+K  + ++  ++  V  E+ G+
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGY 408


>AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8531226-8533266 FORWARD
           LENGTH=593
          Length = 593

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 12/261 (4%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMM 200
           H  LLN    AG ++K+   +++M++MG  SP  + YN ++         +K   +   M
Sbjct: 159 HNHLLNGLCKAGYIEKADGLVREMREMG-PSPNCVSYNTLIKGLCSVNNVDKALYLFNTM 217

Query: 201 KEDGVSPDIFSYRICLNSYGARSDL-ENMEKLLEKI--ETEGDIAVDWMTYSTVANFYVK 257
            + G+ P+  +  I +++   +  +  N +KLLE+I   ++ +  +D +  + + +   K
Sbjct: 218 NKYGIRPNRVTCNIIVHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFK 277

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
            G   +AL   K+   K    D+V YN +I    S G   +M+  +    D  K+ +N +
Sbjct: 278 NGNVVQALEVWKEMSQKNVPADSVVYNVIIRGLCSSG---NMVAAYGFMCDMVKRGVNPD 334

Query: 318 ---YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
              Y T++  L K G  +EA  L G  +  G   D     +++ G    G + +A   L 
Sbjct: 335 VFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLL 394

Query: 375 SMVDKGKTPTPNSWSIIASGH 395
           SM+     P    W+++  G+
Sbjct: 395 SMLKSSLLPEVLLWNVVIDGY 415



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 18/287 (6%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAM 199
           V+  ++     +G++  +   M  M   G V+P    YN ++S   +  + ++  D+   
Sbjct: 302 VYNVIIRGLCSSGNMVAAYGFMCDMVKRG-VNPDVFTYNTLISALCKEGKFDEACDLHGT 360

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M+  GV+PD  SY++ +       D+    + L  +     +  + + ++ V + Y + G
Sbjct: 361 MQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLP-EVLLWNVVIDGYGRYG 419

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK------KKDMMRLWKLQKDNCKKQ 313
               AL  L        K +    N +I  Y   G+       K+ MR  K+  D     
Sbjct: 420 DTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPD----- 474

Query: 314 LNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETML 373
               Y  +LG    LG L  A +L  +    G   D      L+ G   KG ++KAE++L
Sbjct: 475 -TTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLL 533

Query: 374 RSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKG 420
             +   G T     + I+A  +   +   +A+  +K+ LA    N+G
Sbjct: 534 SRIQATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLA--TRNRG 578


>AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
           protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659
          Length = 659

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 2/222 (0%)

Query: 163 MQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGA 221
           +++M   G +S ++ YN ++    +  + E     L  M++ G+SP++ ++   L+ Y  
Sbjct: 413 LKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSV 472

Query: 222 RSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAV 281
           R D++ +  +LEK+   G    D +T+S + N   +A     A    K+  +   + + +
Sbjct: 473 RGDVKKVHGVLEKLLVHG-FKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEI 531

Query: 282 AYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQW 341
            YN +I    S G     ++L+   K+N        Y   +    K+  +++AE+LL   
Sbjct: 532 TYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTM 591

Query: 342 ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
              G   D    + L+   S  G   +A  M  S+   G  P
Sbjct: 592 LRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVP 633


>AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8128086-8130242 REVERSE
           LENGTH=718
          Length = 718

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 124/302 (41%), Gaps = 16/302 (5%)

Query: 148 NCYVMA----GSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
           N Y+ A    G +D +   +  M     VS   YN +M  Y +  +  +   +   ++  
Sbjct: 347 NIYICALCDFGRIDDARELLSSMAAPDVVS---YNTLMHGYIKMGKFVEASLLFDDLRAG 403

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
            + P I +Y   ++      +LE  ++L E++ T+  I  D +TY+T+   +VK G    
Sbjct: 404 DIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL-IFPDVITYTTLVKGFVKNGNLSM 462

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK--LQKDNCKKQLNREYITM 321
           A     +   K  K D  AY         LG      RL +  +  D+    L    + +
Sbjct: 463 ATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRI 522

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
            G L K+G+L +A +   +    G   D      ++ GY   G  + A  +   M+ K  
Sbjct: 523 DG-LCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRL 581

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
            P+  ++ ++  GH     +E+AFQ   E      + +G RP     +++L  +    +I
Sbjct: 582 YPSVITYFVLIYGHAKAGRLEQAFQYSTE-----MKKRGVRPNVMTHNALLYGMCKAGNI 636

Query: 442 EE 443
           +E
Sbjct: 637 DE 638


>AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15009605-15012319 FORWARD
           LENGTH=904
          Length = 904

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 119/279 (42%), Gaps = 10/279 (3%)

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKED 203
           G L+  Y    +V+++      M+  G V    Y++++++YTR   ++K  +V+ +MK+D
Sbjct: 249 GMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMITIYTRLRLYDKAEEVIDLMKQD 308

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
            V   + ++ + LN+Y  +  +E  E +L  +E  G  + + + Y+T+   Y K    + 
Sbjct: 309 RVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAG-FSPNIIAYNTLITGYGKIFKMEA 367

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLG 323
           A     +  +   + D  +Y  MI  +      ++    ++  K    K  +    T++ 
Sbjct: 368 AQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLIN 427

Query: 324 CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
              K GD + A K +      G  Y   +  I+L  Y + G I+    +L+         
Sbjct: 428 LQAKYGDRDGAIKTIEDMTGIGCQYS-SILGIILQAYEKVGKIDVVPCVLKGSFHNHIRL 486

Query: 384 TPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWR 422
              S+S +   +V K  M        + L +L E K WR
Sbjct: 487 NQTSFSSLVMAYV-KHGM------VDDCLGLLREKK-WR 517



 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 161 SQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSY 219
           S ++ M+  GF VS   YN ++  Y + +Q EK   +L  MK+    PD ++Y I +N Y
Sbjct: 754 SAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIY 813

Query: 220 GARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRD 279
           G +  ++ +  +L++++  G +  D  +Y+T+   Y   G+ ++A+  +K+   +    D
Sbjct: 814 GEQGWIDEVADVLKELKESG-LGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPD 872

Query: 280 AVAYNHMIS 288
            V Y ++++
Sbjct: 873 KVTYTNLVT 881



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 167 KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLE 226
           K  G V  + YN I++ Y + + +  +   +  M+ DG S  + +Y   L++YG    +E
Sbjct: 726 KRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQME 785

Query: 227 NMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHM 286
               +L++++       D  TY+ + N Y + G  D+    LK+ ++     D  +YN +
Sbjct: 786 KFRSILKRMKKSTS-GPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTL 844

Query: 287 ISHYASLGKKKDMMRLWK 304
           I  Y   G  ++ + L K
Sbjct: 845 IKAYGIGGMVEEAVGLVK 862


>AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:11695611-11697896 FORWARD LENGTH=761
          Length = 761

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 118/276 (42%), Gaps = 27/276 (9%)

Query: 206 SPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKAL 265
           S D+ S  I +N Y    DLE  E L E++++  D  V W   +++ + Y++AG   +A 
Sbjct: 365 SFDLQSCNIIINRYLKNGDLERAETLFERVKSLHD-KVSW---TSMIDGYLEAGDVSRAF 420

Query: 266 IYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCK---KQLNREYITML 322
              +K  DK    D V +  MIS    L + +       L  D  +   K LN  Y  +L
Sbjct: 421 GLFQKLHDK----DGVTWTVMIS---GLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLL 473

Query: 323 GCLVKLGDLEEAEKLLGQWELSGNTY--DFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
                  +L++ + +      +   Y  D  + N L+  Y++ G IE A  +   MV K 
Sbjct: 474 SSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKD 533

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRD 440
                 SW+ +  G       +KA   FKE L     + G +P S     +LS  + +  
Sbjct: 534 TV----SWNSMIMGLSHHGLADKALNLFKEML-----DSGKKPNSVTFLGVLSACSHSGL 584

Query: 441 IEEVEDFVNSLKKVMSMNR--DMYLSLIKLYVRCGR 474
           I    +   ++K+  S+    D Y+S+I L  R G+
Sbjct: 585 ITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGK 620


>AT1G11900.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4013166-4014630 REVERSE
           LENGTH=367
          Length = 367

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%)

Query: 178 NNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIET 237
           N I+  +  T Q +KV  +L  MKE    PD+ +Y   L+  G    +  +  +L  ++ 
Sbjct: 181 NRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAGLVNEILGVLSTMKE 240

Query: 238 EGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK 297
           +  ++V+ +TY+TV N   KA   D  L+   +      + D ++Y  +I      G  K
Sbjct: 241 DCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSYTAVIDSLGRSGNVK 300

Query: 298 DMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
           + +RL+   K    +     Y  ++ CL K GD + A +L
Sbjct: 301 ESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQL 340


>AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:11425270-11427669 REVERSE
           LENGTH=799
          Length = 799

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 138/342 (40%), Gaps = 50/342 (14%)

Query: 138 KTEKVHG--ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHE---- 191
           + E V G    +N   + G  +K+++ + ++ D  +++      ++ +  R   +E    
Sbjct: 241 ENESVFGYKTFINGLCVTGETEKAVALILELIDRKYLAGDDLRAVLGMVVRGFCNEMKMK 300

Query: 192 KVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV 251
               V+  M+E G   D+++    ++ Y    +L      L+K+  +G + V+ +  S +
Sbjct: 301 AAESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKG-LKVNCVIVSLI 359

Query: 252 ANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCK 311
              Y K  +  +AL   K+  D     D V YN                           
Sbjct: 360 LQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYN--------------------------- 392

Query: 312 KQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAET 371
                        L KLG +EEA +LL + +  G   D      L+ GY  +G +  A  
Sbjct: 393 --------VAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALD 444

Query: 372 MLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSI 431
           ++  M+  G +P   +++++ SG     + E+  + ++   A     +G +P +   S I
Sbjct: 445 LIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKA-----EGPKPNAVTNSVI 499

Query: 432 LSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCG 473
           +  +   R ++E EDF +SL++    N+    S +K Y   G
Sbjct: 500 IEGLCFARKVKEAEDFFSSLEQKCPENKA---SFVKGYCEAG 538



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 113/274 (41%), Gaps = 44/274 (16%)

Query: 154 GSVDKSLSQMQKMKDMGFVSP-LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           G V+++   +Q+MKD G V   ++Y  ++  Y    +     D++  M  +G+SPD+ +Y
Sbjct: 402 GRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITY 461

Query: 213 RICLNSYGARSDLENMEKLLEKIETEG--------DIAVDWMTYS--------------- 249
            + ++        E + ++ E+++ EG         + ++ + ++               
Sbjct: 462 NVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521

Query: 250 ----TVANF---YVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDM--- 299
                 A+F   Y +AGL  KA     + E    K   +     +     L K  D+   
Sbjct: 522 KCPENKASFVKGYCEAGLSKKAYKAFVRLEYPLRKSVYIKLFFSLCIEGYLEKAHDVLKK 581

Query: 300 MRLWKLQ--KDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILL 357
           M  ++++  +  C K        M+G   KL ++ EA+ L       G   D     I++
Sbjct: 582 MSAYRVEPGRSMCGK--------MIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMI 633

Query: 358 IGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
             Y R   ++KAE++   M  +G  P   +++++
Sbjct: 634 HTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVL 667



 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 23/195 (11%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           M E G+ PD+F+Y I +++Y   ++L+  E L E ++  G I  D +TY+ + + Y+K  
Sbjct: 617 MVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRG-IKPDVVTYTVLLDRYLKLD 675

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
            +      +   + +  KR A   + ++  +++ G   D++    L    C         
Sbjct: 676 PEHHETCSV---QGEVGKRKA---SEVLREFSAAGIGLDVVCYTVLIDRQC--------- 720

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
                  K+ +LE+A +L  +   SG   D      L+  Y RKG I+ A T++  +  K
Sbjct: 721 -------KMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKK 773

Query: 380 GKTPTPNSWSIIASG 394
              P+ +  + + S 
Sbjct: 774 YNIPSESFEAAVKSA 788



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/313 (17%), Positives = 136/313 (43%), Gaps = 37/313 (11%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMG-FVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           +L CY       ++L + ++ +DM  F+  + YN      ++  + E+  ++L  MK+ G
Sbjct: 359 ILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRG 418

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           + PD+ +Y   ++ Y  +  + +   L++++   G ++ D +TY+ + +   + G +++ 
Sbjct: 419 IVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNG-MSPDLITYNVLVSGLARNGHEEEV 477

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW------------KLQKDNCKK 312
           L   ++ + +  K +AV  + +I       K K+    +               K  C+ 
Sbjct: 478 LEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQKCPENKASFVKGYCEA 537

Query: 313 QLNRE----------------YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
            L+++                YI +   L   G LE+A  +L +           +   +
Sbjct: 538 GLSKKAYKAFVRLEYPLRKSVYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKM 597

Query: 357 LIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLA 416
           +  + +   + +A+ +  +MV++G  P   +++I+   +     ++KA   F++      
Sbjct: 598 IGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFED-----M 652

Query: 417 ENKGWRPKSDVVS 429
           + +G +P  DVV+
Sbjct: 653 KQRGIKP--DVVT 663


>AT2G20720.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8928009-8928908 REVERSE
           LENGTH=299
          Length = 299

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 32/287 (11%)

Query: 180 IMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARS--DLENMEKLLEKIET 237
           ++ LY + E H+ V  +L  M E  + P    +   L SY   S  D++ +EK L K E 
Sbjct: 1   MLCLYHQAEDHDMVVKLLGEMDEKKMQPQGLCFVKLLTSYSMASVVDVQGVEKFLSKWEV 60

Query: 238 EGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDA---VAYNHMISHYASLG 294
              I   W T+      Y++AG  +K L  L++ E   +  D    + Y  +++ Y +  
Sbjct: 61  M--IQDKWTTFYFPGLVYIRAGFMEKGLALLRRSE--TFVDDGCREIIYGCLMTVYCNEN 116

Query: 295 KKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPN 354
             +D+ RLW L KD      +     ++    K GDL   + ++ +W         + PN
Sbjct: 117 LTEDVYRLWNLAKDYGISFDSSRCSDIVKAFTKKGDL---DGVMEEWN--------ECPN 165

Query: 355 ILLI--GYSRKGLIEKAETMLRSMVDKGKT---PTPNSWSIIASGHVAKENMEKAFQCFK 409
           + L+  G   + + E+AE ++  M+ K ++      +  + +     AKE  E+  +   
Sbjct: 166 LDLMDFGLQHRCVKEEAEKVV-DMLGKKESKWESLAHKVNTLVEDEDAKE--EERRKRVA 222

Query: 410 EALAVLAENKGWRPKSDVVSSILS---WVTDNRDIEEVEDFVNSLKK 453
           EA+     ++ W PK+ +  S  +   +V   RD+E   D +  L K
Sbjct: 223 EAMEGRLHDR-WNPKNSMALSAFACVQYVEGRRDMESTADILRLLNK 268


>AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16478860-16480443 REVERSE
           LENGTH=527
          Length = 527

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/305 (18%), Positives = 121/305 (39%), Gaps = 40/305 (13%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL--------------HYNNIMSLYTRTEQH 190
           +L+N + +   +++++S + +M +MG    +              H N  +SL+ + E +
Sbjct: 147 SLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENY 206

Query: 191 EKVPDV----------------------LAMMKEDGVSPDIFSYRICLNSYGARSDLENM 228
              PDV                      L  M +  + PD+ ++   ++++       + 
Sbjct: 207 GIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDA 266

Query: 229 EKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
           E+L  ++     IA +  TY+++ N +   G  D+A       E K    D VAY  +I+
Sbjct: 267 EELYNEM-IRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLIN 325

Query: 289 HYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTY 348
            +    K  D M+++              Y T++    ++G    A+++       G   
Sbjct: 326 GFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPP 385

Query: 349 DFKVPNILLIGYSRKGLIEKAETMLRSMVDK---GKTPTPNSWSIIASGHVAKENMEKAF 405
           + +  N+LL      G ++KA  +   M  +   G  P   +++++  G      +EKA 
Sbjct: 386 NIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKAL 445

Query: 406 QCFKE 410
             F++
Sbjct: 446 MVFED 450


>AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18097048-18099027 FORWARD
           LENGTH=659
          Length = 659

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/421 (19%), Positives = 175/421 (41%), Gaps = 60/421 (14%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQN--LS 134
           +VK LR       AL   + +++  L    P    V +  +     ++S +   Q   L 
Sbjct: 46  VVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQ 105

Query: 135 DSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKV 193
               +E +  ++++ Y   G  ++++    ++K+ G    +  YN+++       + + +
Sbjct: 106 GFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMI 165

Query: 194 PDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVAN 253
             V   MK DG  P++F+Y + L +    + ++  +KLL ++  +G    D ++Y+TV +
Sbjct: 166 YMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKG-CCPDAVSYTTVIS 224

Query: 254 FYVKAGLKDKALIYLKKCEDKAYKRDAV--AYNHMISHYASLGKKKDMMRLWKLQKDNCK 311
              + GL       +K+  + A + + V   YN +I+    L K+ D    ++L ++  +
Sbjct: 225 SMCEVGL-------VKEGRELAERFEPVVSVYNALIN---GLCKEHDYKGAFELMREMVE 274

Query: 312 KQLNR---EYITMLGCLVKLGDLEEAEKLLGQ-------------------WELSGNTYD 349
           K ++     Y T++  L   G +E A   L Q                     L G T+D
Sbjct: 275 KGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFD 334

Query: 350 -----------FKV-PNI-----LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIA 392
                      F + PN+     L+ G+   G I KA ++   M + G +P   ++  + 
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394

Query: 393 SGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLK 452
           +G   + +++ A   + + L       G  P   V ++++  +  +   +E E  +  + 
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLT-----SGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMS 449

Query: 453 K 453
           K
Sbjct: 450 K 450


>AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:18694316-18695734 REVERSE
           LENGTH=472
          Length = 472

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 117/269 (43%), Gaps = 9/269 (3%)

Query: 135 DSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIM--SLYTRTEQHEK 192
           D D ++K +  +L   V    ++ +    + M+++G    +   N++  +L       + 
Sbjct: 116 DCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDA 175

Query: 193 VPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVA 252
              +   M + G  PD ++Y   ++       ++  +KL  ++  E D A   +TY+++ 
Sbjct: 176 GLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEM-VEKDCAPTVVTYTSLI 234

Query: 253 NFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQ-KDNCK 311
           N    +   D+A+ YL++ + K  + +   Y+ ++      G+    M L+++     C+
Sbjct: 235 NGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294

Query: 312 KQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAET 371
             +   Y T++  L K   ++EA +LL +  L G   D  +   ++ G+       +A  
Sbjct: 295 PNM-VTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAAN 353

Query: 372 MLRSMVDKGKTPTPNSWSIIASGHVAKEN 400
            L  M+  G TP   +W+I    HV   N
Sbjct: 354 FLDEMILGGITPNRLTWNI----HVKTSN 378


>AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26551879-26553741 FORWARD
           LENGTH=620
          Length = 620

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 144/329 (43%), Gaps = 39/329 (11%)

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYST 250
           E+   + A + + G   D+++    +NSY    + +    L ++I    D+     ++++
Sbjct: 132 EETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV-----SWNS 186

Query: 251 VANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNC 310
           V   YVKAG  D AL   +K  +K    +A+++  MIS Y      K+ ++L+   +++ 
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEK----NAISWTTMISGYVQADMNKEALQLFHEMQNSD 242

Query: 311 KKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAE 370
            +  N      L    +LG LE+ + +      +    D  +  +L+  Y++ G +E+A 
Sbjct: 243 VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEAL 302

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS 430
            + +++    K  +  +W+ + SG+    +  +A   F E      +  G +P     ++
Sbjct: 303 EVFKNI----KKKSVQAWTALISGYAYHGHGREAISKFME-----MQKMGIKPNVITFTA 353

Query: 431 ILSWVTDNRDIEEVEDFVNSLKKVMSMNRDM--YLSLIKLYVRCG--REVDGVLESM--- 483
           +L+  +    +EE +    S+++  ++   +  Y  ++ L  R G   E    ++ M   
Sbjct: 354 VLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK 413

Query: 484 ----------KA----DNIELDEEMEEIL 498
                     KA     NIEL EE+ EIL
Sbjct: 414 PNAVIWGALLKACRIHKNIELGEEIGEIL 442


>AT4G20740.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:11126151-11128334 FORWARD
           LENGTH=727
          Length = 727

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 115/257 (44%), Gaps = 13/257 (5%)

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
           MK+ G  P +F Y   +++       +    + E  + +G +  +  T+  +     KAG
Sbjct: 219 MKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDG-LVEESTTFMILVKGLCKAG 277

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREY 318
             ++ L  L++  +   K D  AY  MI    S G     +R+W ++++D  K  +   Y
Sbjct: 278 RIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDV-MAY 336

Query: 319 ITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
            T++  L K G +E   +L  + +      D ++  +L+ G+   G +  A  +   +VD
Sbjct: 337 GTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVD 396

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSIL-SWVTD 437
            G       ++ +  G  +   ++KA++ F+ A+      +   P  + +S I+ ++V  
Sbjct: 397 SGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAI-----EEELEPDFETLSPIMVAYVVM 451

Query: 438 NRDIEEVEDFVNSLKKV 454
           NR    + DF N L+++
Sbjct: 452 NR----LSDFSNVLERI 464


>AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:473881-476592 REVERSE
           LENGTH=903
          Length = 903

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 99/201 (49%), Gaps = 14/201 (6%)

Query: 137 DKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVS-PLHYNNIMSLYTRTEQHEKVPD 195
           ++ EK+H      +    +V  ++ +++KM +       + +N+I+S Y   EQ E    
Sbjct: 534 EEAEKIHSR----FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQM 589

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           +   M E G++PD F+Y   L++    +    + K +     + ++  D    ST+ + Y
Sbjct: 590 LFTRMMEMGITPDKFTYATVLDTCANLAS-AGLGKQIHAQVIKKELQSDVYICSTLVDMY 648

Query: 256 VKAG-LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQ 313
            K G L D  L++     +K+ +RD V +N MI  YA  GK ++ ++L+ ++  +N K  
Sbjct: 649 SKCGDLHDSRLMF-----EKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPN 703

Query: 314 LNREYITMLGCLVKLGDLEEA 334
            +  +I++L     +G +++ 
Sbjct: 704 -HVTFISILRACAHMGLIDKG 723


>AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2056999-2060242 REVERSE
           LENGTH=997
          Length = 997

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 7/261 (2%)

Query: 154 GSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYR 213
           G   + L+ M  M +  + SP  +N+++  Y  +  H     +L  M + G  P    Y 
Sbjct: 354 GRCKRVLNMM--MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYN 411

Query: 214 ICLNSYGARSDLENME--KLLEKIETE---GDIAVDWMTYSTVANFYVKAGLKDKALIYL 268
           I + S     D  N +   L EK  +E     + ++ +  S+       AG  +KA   +
Sbjct: 412 ILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVI 471

Query: 269 KKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKL 328
           ++   + +  D   Y+ ++++  +  K +    L++  K          Y  M+    K 
Sbjct: 472 REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 531

Query: 329 GDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSW 388
           G +E+A K   +    G T +      L+  Y +   +  A  +  +M+ +G  P   ++
Sbjct: 532 GLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTY 591

Query: 389 SIIASGHVAKENMEKAFQCFK 409
           S +  GH     +EKA Q F+
Sbjct: 592 SALIDGHCKAGQVEKACQIFE 612



 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 122/290 (42%), Gaps = 24/290 (8%)

Query: 123 LESAESYFQNLSDSDKTEKV--HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL-HYNN 179
           +E A  +F  + +   T  V  + AL++ Y+ A  V  +    + M   G +  +  Y+ 
Sbjct: 534 IEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSA 593

Query: 180 IMSLYTRTEQHEK-------------VPDVLAMMKE---DGVSPDIFSYRICLNSYGARS 223
           ++  + +  Q EK             VPDV    K+   +   P++ +Y   L+ +    
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 224 DLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAY 283
            +E   KLL+ +  EG    + + Y  + +   K G  D+A     +  +  +      Y
Sbjct: 654 RVEEARKLLDAMSMEG-CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTY 712

Query: 284 NHMISHYASLGKKKDMMR--LWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQW 341
           + +I  Y  + K++D+    L K+ +++C   +   Y  M+  L K+G  +EA KL+   
Sbjct: 713 SSLIDRYFKV-KRQDLASKVLSKMLENSCAPNVVI-YTEMIDGLCKVGKTDEAYKLMQMM 770

Query: 342 ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
           E  G   +      ++ G+   G IE    +L  M  KG  P   ++ ++
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVL 820



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 131/315 (41%), Gaps = 30/315 (9%)

Query: 103 CPILPGDRAVQLELIGRVRG---------LESAE-SYFQNLSDSDKTEKVH-GALLNCYV 151
           C  +PG     + LIG + G         L+ AE +Y + L+      K++  +   C  
Sbjct: 401 CGHMPGYVVYNI-LIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLC 459

Query: 152 MAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIF 210
            AG  +K+ S +++M   GF+     Y+ +++      + E    +   MK  G+  D++
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY 519

Query: 211 SYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKK 270
           +Y I ++S+     +E   K   ++   G    + +TY+ + + Y+KA     A    + 
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVG-CTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 271 CEDKAYKRDAVAYNHMISHYASLGKKK----------------DMMRLWKLQKDNCKKQL 314
              +    + V Y+ +I  +   G+ +                D+   +K   DN ++  
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLR 374
              Y  +L    K   +EEA KLL    + G   +  V + L+ G  + G +++A+ +  
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698

Query: 375 SMVDKGKTPTPNSWS 389
            M + G   T  ++S
Sbjct: 699 EMSEHGFPATLYTYS 713


>AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:13490251-13491458 FORWARD
           LENGTH=369
          Length = 369

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 6/269 (2%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVP--DVLAMMKE 202
           +L+N + ++ S+  ++    +M+ MG    +  + I+ + T  +    VP  +VL  MK+
Sbjct: 18  SLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTIL-IDTLCKNRLVVPALEVLKRMKD 76

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G+SP++ +Y   +        L + E+ L +++++  I  + +T+S + + Y K G   
Sbjct: 77  RGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK-KINPNVITFSALIDAYAKRGKLS 135

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQ-KDNCKKQLNREYITM 321
           K     K     +   +   Y+ +I       +  + +++  L     C   +   Y T+
Sbjct: 136 KVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNV-VTYSTL 194

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
                K   +++  KLL      G   +    N L+ GY + G I+ A  +   M   G 
Sbjct: 195 ANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGL 254

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKE 410
            P   S++I+ +G  A   +EKA   F+ 
Sbjct: 255 IPNIRSYNIVLAGLFANGEVEKALSRFEH 283


>AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2399117-2400496 REVERSE
           LENGTH=459
          Length = 459

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 119/276 (43%), Gaps = 4/276 (1%)

Query: 140 EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLA 198
           E +   L+  Y  AGSVDK++    K+     V  +   N ++++     + EK      
Sbjct: 116 ESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFD 175

Query: 199 MMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKA 258
             K+  + P+  S+ I +  +  + D E   K+ +++  E ++    +TY+++  F  + 
Sbjct: 176 GAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEM-LEMEVQPSVVTYNSLIGFLCRN 234

Query: 259 GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL-WKLQKDNCKKQLNRE 317
               KA   L+    K  + +AV +  ++      G+  +  +L + ++   CK  L   
Sbjct: 235 DDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGL-VN 293

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y  ++  L K G ++EA+ LLG+ +      D  + NIL+     +  + +A  +L  M 
Sbjct: 294 YGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQ 353

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALA 413
            KG  P   ++ ++  G    E+ +         LA
Sbjct: 354 MKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLA 389


>AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11245976-11247763 FORWARD
           LENGTH=595
          Length = 595

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           V PD  +Y   + +    +D+   E +   +   G  ++ ++  +++ + Y   G  D A
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQ-NSLLHLYANCG--DVA 173

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGC 324
             Y  K  DK  ++D VA+N +I+ +A  GK ++ + L+        K      +++L  
Sbjct: 174 SAY--KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSA 231

Query: 325 LVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPT 384
             K+G L   +++       G T +    N+LL  Y+R G +E+A+T+   MVDK     
Sbjct: 232 CAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV-- 289

Query: 385 PNSWSIIASGHVAKENMEKAFQCFK 409
             SW+ +  G       ++A + FK
Sbjct: 290 --SWTSLIVGLAVNGFGKEAIELFK 312


>AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5690020-5691543 FORWARD
           LENGTH=507
          Length = 507

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 10/259 (3%)

Query: 157 DKSLSQMQKMKDMGFVSPL--HYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRI 214
           D  +S  ++M+ +G + PL    N +M     + Q  +    L  M + G  PD+ ++  
Sbjct: 100 DVVISLFEQMQILG-IPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTS 158

Query: 215 CLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDK 274
            LN Y   + +E+   L ++I   G    + +TY+T+     K    + A+    +    
Sbjct: 159 LLNGYCHWNRIEDAIALFDQILGMG-FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTN 217

Query: 275 AYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT---MLGCLVKLGDL 331
             + + V YN +++    +G+  D    W L +D  K+++    IT   ++   VK+G L
Sbjct: 218 GSRPNVVTYNALVTGLCEIGRWGDAA--W-LLRDMMKRRIEPNVITFTALIDAFVKVGKL 274

Query: 332 EEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSII 391
            EA++L           D      L+ G    GL+++A  M   M   G  P    ++ +
Sbjct: 275 MEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL 334

Query: 392 ASGHVAKENMEKAFQCFKE 410
             G    + +E   + F E
Sbjct: 335 IHGFCKSKRVEDGMKIFYE 353



 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/193 (19%), Positives = 88/193 (45%), Gaps = 7/193 (3%)

Query: 199 MMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKA 258
           +M+ +G  P+   Y   ++ +     +E+  K+  ++  +G +A + +TY+ +   Y   
Sbjct: 318 LMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVA-NTITYTVLIQGYCLV 376

Query: 259 GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREY 318
           G  D A     +   +    D   YN ++      GK +  + +++  +   K++++   
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR---KREMDINI 433

Query: 319 IT---MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
           +T   ++  + KLG +E+A  L       G   +      ++ G+ R+GLI +A+++ + 
Sbjct: 434 VTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKK 493

Query: 376 MVDKGKTPTPNSW 388
           M + G  P  + +
Sbjct: 494 MKEDGFLPNESVY 506


>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28133933-28135381 FORWARD
           LENGTH=453
          Length = 453

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 131/308 (42%), Gaps = 20/308 (6%)

Query: 109 DRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKD 168
           D+AV+L L     G       FQ+L+  +        +L+    +  V+K+    + ++ 
Sbjct: 143 DKAVKLFLNMHEHGC------FQDLASFN-------TILDVLCKSKRVEKAYELFRALRG 189

Query: 169 MGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENM 228
              V  + YN I++ +   ++  K  +VL  M E G++P++ +Y   L  +     + + 
Sbjct: 190 RFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHA 249

Query: 229 EKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMIS 288
            +   +++   D  +D +TY+TV + +  AG   +A     +   +        YN MI 
Sbjct: 250 WEFFLEMKKR-DCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 308

Query: 289 HYASLGKKKDMMRLWKLQKDNCKKQLN---REYITMLGCLVKLGDLEEAEKLLGQWELSG 345
               L KK ++     + ++  ++        Y  ++  L   G+    E+L+ + E  G
Sbjct: 309 ---VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEG 365

Query: 346 NTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAF 405
              +F+  N+++  YS    +EKA  +   M      P  ++++I+ SG   ++  E   
Sbjct: 366 CEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMV 425

Query: 406 QCFKEALA 413
               +A A
Sbjct: 426 VAGNQAFA 433


>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10304850-10307465 FORWARD
           LENGTH=871
          Length = 871

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/345 (19%), Positives = 153/345 (44%), Gaps = 32/345 (9%)

Query: 138 KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVL 197
           + ++    LL+ Y   G +D + +  ++M D   VS   Y ++++ Y R     +   + 
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS---YTSMIAGYAREGLAGEAVKLF 385

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
             M+E+G+SPD+++    LN       L+  +++ E I+ E D+  D    + + + Y K
Sbjct: 386 EEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-ENDLGFDIFVSNALMDMYAK 444

Query: 258 AG-LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN- 315
            G +++  L++      +   +D +++N +I  Y+      + + L+ L  +  +K+ + 
Sbjct: 445 CGSMQEAELVF-----SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE--EKRFSP 497

Query: 316 --REYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETML 373
             R    +L     L   ++  ++ G    +G   D  V N L+  Y++ G +  A  + 
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557

Query: 374 RSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCF-KEALAVLAENKGWRPKSDVVS--S 430
             +  K       SW+++ +G+            F KEA+A+  + +    ++D +S  S
Sbjct: 558 DDIASKDLV----SWTVMIAGY--------GMHGFGKEAIALFNQMRQAGIEADEISFVS 605

Query: 431 ILSWVTDNRDIEEVEDFVNSLKKVMSM--NRDMYLSLIKLYVRCG 473
           +L   + +  ++E   F N ++    +    + Y  ++ +  R G
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTG 650


>AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:23195609-23198524 REVERSE
           LENGTH=971
          Length = 971

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 119/273 (43%), Gaps = 18/273 (6%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
           +HG     Y   G++  +L Q ++M + G     + Y+ ++   ++    E+   +L  M
Sbjct: 249 IHG-----YFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKM 303

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
            ++GV P++ +Y   +        LE    L  +I + G I VD   Y T+ +   + G 
Sbjct: 304 IKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVG-IEVDEFLYVTLIDGICRKGN 362

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE--- 317
            ++A   L   E +  +   + YN +I+     G+          + D   K +  +   
Sbjct: 363 LNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVS--------EADEVSKGVVGDVIT 414

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMV 377
           Y T+L   +K+ +++   ++  ++  +    D  + NILL  +   G   +A+ + R+M 
Sbjct: 415 YSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMP 474

Query: 378 DKGKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
           +   TP   +++ +  G+     +E+A + F E
Sbjct: 475 EMDLTPDTATYATMIKGYCKTGQIEEALEMFNE 507



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 137/317 (43%), Gaps = 18/317 (5%)

Query: 170 GFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVS-P-DIFSYRICLNSYGARSDLEN 227
            F S L + +++  +    + +   +VL MM    V+ P D F     ++ +      E 
Sbjct: 130 AFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPEL 189

Query: 228 MEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMI 287
                E     G +  + +TY+T+ +   + G  D+    +++ ED+ ++ D V Y++ I
Sbjct: 190 ALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWI 249

Query: 288 SHYASLGKKKDMMRLWKLQKDNCKKQLNRE---YITMLGCLVKLGDLEEAEKLLGQWELS 344
             Y   G   D +      ++  +K +NR+   Y  ++  L K G++EEA  LLG+    
Sbjct: 250 HGYFKGGALVDALM---QDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKE 306

Query: 345 GNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA 404
           G   +      ++ G  + G +E+A  +   ++  G       +  +  G   K N+ +A
Sbjct: 307 GVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRA 366

Query: 405 FQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLS 464
           F    +      E +G +P     +++++ +     + E ++    + K +  +   Y +
Sbjct: 367 FSMLGD-----MEQRGIQPSILTYNTVINGLCMAGRVSEADE----VSKGVVGDVITYST 417

Query: 465 LIKLYVRCGREVDGVLE 481
           L+  Y++  + +D VLE
Sbjct: 418 LLDSYIKV-QNIDAVLE 433



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 13/192 (6%)

Query: 192 KVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV 251
           K  ++ +  K  GV+ +  +Y   +N    +  L    +L + +E  G +  + +TY  +
Sbjct: 673 KALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSE-VTYGIL 731

Query: 252 ANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCK 311
            +   K GL   A   L     K    + + YN ++  Y  LG+ +D MR+        +
Sbjct: 732 IDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVS------R 785

Query: 312 KQLNR------EYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGL 365
           K + R         +M+    K GD+EEA  +  +++    + DF     L+ G+  KG 
Sbjct: 786 KMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGR 845

Query: 366 IEKAETMLRSMV 377
           +E+A  +LR M+
Sbjct: 846 MEEARGLLREML 857


>AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23985078-23986649 REVERSE
           LENGTH=523
          Length = 523

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 148/358 (41%), Gaps = 16/358 (4%)

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           G+LLN +       +++S +  M   GFV + + YN +++   +        +V   M++
Sbjct: 153 GSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEK 212

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
            G+  D  +Y   ++         +  +LL  +  +  I  + + ++ + + +VK G   
Sbjct: 213 KGIRADAVTYNTLISGLSNSGRWTDAARLLRDM-VKRKIDPNVIFFTALIDTFVKEGNLL 271

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQ-KDNCKKQLNREYITM 321
           +A    K+   ++   +   YN +I+ +   G   D   ++ L     C   +   Y T+
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDV-VTYNTL 330

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           +    K   +E+  KL  +    G   D    N L+ GY + G +  A+ +   MVD G 
Sbjct: 331 ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 390

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSS--ILSWVTDNR 439
           +P   +++I+         +EK       AL ++ + +      D+++   I+  +    
Sbjct: 391 SPDIVTYNILLDCLCNNGKIEK-------ALVMVEDLQKSEMDVDIITYNIIIQGLCRTD 443

Query: 440 DIEEVEDFVNSL-KKVMSMNRDMYLSLIKLYVRCG--REVDGVLESMKADNIELDEEM 494
            ++E      SL +K +  +   Y+++I    R G  RE D +   MK D     E +
Sbjct: 444 KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERI 501


>AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2672756-2675254 REVERSE
           LENGTH=832
          Length = 832

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 26/276 (9%)

Query: 133 LSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFV-SPLHYNNIMSLYTRTEQHE 191
           L DSD    V    +NC V A  VD +++ +  +   G +  P+ YNNI+    +  + E
Sbjct: 436 LPDSDSLSIV----INCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSE 491

Query: 192 KVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV 251
           +   +L  MK+ GV P  F+          R D      LL+K+   G     W+ ++T 
Sbjct: 492 ESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYG--FEPWIKHTT- 548

Query: 252 ANFYVKA----GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYAS---LGKKKDMMRLWK 304
             F VK     G    A  YL     + +        HM++  A+   L K + + R  +
Sbjct: 549 --FLVKKLCENGRAVDACKYLDDVAGEGF------LGHMVASTAAIDGLIKNEGVDRGLE 600

Query: 305 LQKDNCKKQLNRE---YITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYS 361
           L +D C      +   Y  ++  L K     EA+ L  +    G        N ++ G+ 
Sbjct: 601 LFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWC 660

Query: 362 RKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
           ++G I++  + +  M +  K P   +++ +  G  A
Sbjct: 661 KEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCA 696


>AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:16721084-16723498 REVERSE
           LENGTH=804
          Length = 804

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 145/338 (42%), Gaps = 37/338 (10%)

Query: 163 MQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGAR 222
           +Q   +M       +N ++  +T    + +     + M   GV  D F+Y   + S    
Sbjct: 84  LQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGI 143

Query: 223 SDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVA 282
           S LE  +K+   +   G ++ D    +++ + Y+K G    A    +K  ++  +RD V+
Sbjct: 144 SSLEEGKKIHAMVIKLGFVS-DVYVCNSLISLYMKLGCAWDA----EKVFEEMPERDIVS 198

Query: 283 YNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNR-EYITMLGCLV-----KLGDLEEAEK 336
           +N MIS Y +LG     + L+K +   C  + +R   ++ LG        K+G       
Sbjct: 199 WNSMISGYLALGDGFSSLMLFK-EMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHA 257

Query: 337 LLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHV 396
           +  + E    T D  V   +L  YS+ G +  AE +   M+ +       +W+++   + 
Sbjct: 258 VRSRIE----TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIV----AWNVMIGCYA 309

Query: 397 AKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSI----LSWVTDNRDIEEVEDFVNSLK 452
               +  AF CF++    ++E  G +P  DV++SI     S + + R I        +++
Sbjct: 310 RNGRVTDAFLCFQK----MSEQNGLQP--DVITSINLLPASAILEGRTIHGY-----AMR 358

Query: 453 KVMSMNRDMYLSLIKLYVRCG--REVDGVLESMKADNI 488
           +    +  +  +LI +Y  CG  +  + + + M   N+
Sbjct: 359 RGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNV 396


>AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:7247095-7248878 FORWARD
           LENGTH=564
          Length = 564

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 14/217 (6%)

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNREY 318
           LK   + + +K  D+  KRD V++  MIS ++  G   D + L+K + +++ K      Y
Sbjct: 58  LKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKAN-QFTY 116

Query: 319 ITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
            ++L     LG L+E  ++ G  E      +  V + LL  Y+R G +E+A     SM +
Sbjct: 117 GSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKE 176

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDN 438
           +       SW+ +  G+ A    + +F  F+     L   +G +P      S+L      
Sbjct: 177 RDLV----SWNAMIDGYTANACADTSFSLFQ-----LMLTEGKKPDCFTFGSLLRASIVV 227

Query: 439 RDIEEVEDFVNSLKKVMSMNRDMYL--SLIKLYVRCG 473
           + +E V + ++ L   +   R   L  SL+  YV+CG
Sbjct: 228 KCLEIVSE-LHGLAIKLGFGRSSALIRSLVNAYVKCG 263


>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:22561941-22564433 REVERSE
           LENGTH=830
          Length = 830

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 15/163 (9%)

Query: 249 STVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKD 308
           S++A+ Y K G+ D A     K  D+   R+AVA+N ++  Y   GK ++ +RL+    D
Sbjct: 212 SSLADMYGKCGVLDDA----SKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFS---D 264

Query: 309 NCKKQLNREYITMLGCL---VKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGL 365
             K+ +    +T+  CL     +G +EE ++      ++G   D  +   LL  Y + GL
Sbjct: 265 MRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGL 324

Query: 366 IEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKA-FQC 407
           IE AE +   M +K       +W++I SG+V +  +E A + C
Sbjct: 325 IEYAEMVFDRMFEKDVV----TWNLIISGYVQQGLVEDAIYMC 363



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 136/330 (41%), Gaps = 58/330 (17%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           V  +L + Y   G +D +     ++ D   V+   +N +M  Y +  ++E+   + + M+
Sbjct: 210 VASSLADMYGKCGVLDDASKVFDEIPDRNAVA---WNALMVGYVQNGKNEEAIRLFSDMR 266

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
           + GV P   +   CL++      +E   K    I     + +D +  +++ NFY K GL 
Sbjct: 267 KQGVEPTRVTVSTCLSASANMGGVEE-GKQSHAIAIVNGMELDNILGTSLLNFYCKVGLI 325

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKD------MMRLWKLQKD------- 308
           +    Y +   D+ +++D V +N +IS Y   G  +D      +MRL KL+ D       
Sbjct: 326 E----YAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATL 381

Query: 309 --------NCK--KQLNREYI------------TMLGCLVKLGDLEEAEKLLGQWELSGN 346
                   N K  K++    I            T++    K G + +A+K+      S  
Sbjct: 382 MSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFD----STV 437

Query: 347 TYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQ 406
             D  + N LL  Y+  GL  +A  +   M  +G  P   +W++I    +    +++A  
Sbjct: 438 EKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKD 497

Query: 407 CFKEALAVLAENKGWRPKSDVVSSILSWVT 436
            F +              S ++ +++SW T
Sbjct: 498 MFLQ-----------MQSSGIIPNLISWTT 516



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 121/269 (44%), Gaps = 16/269 (5%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDG 204
           +LLN Y   G ++ +     +M +   V+   +N I+S Y +    E    +  +M+ + 
Sbjct: 314 SLLNFYCKVGLIEYAEMVFDRMFEKDVVT---WNLIISGYVQQGLVEDAIYMCQLMRLEK 370

Query: 205 VSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKA 264
           +  D  +    L S  AR++   + K ++          D +  STV + Y K G    +
Sbjct: 371 LKYDCVTLAT-LMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCG----S 425

Query: 265 LIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL-WKLQKDNCKKQLNREYITMLG 323
           ++  KK  D   ++D + +N +++ YA  G   + +RL + +Q +     +    + +L 
Sbjct: 426 IVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILS 485

Query: 324 CLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
            L++ G ++EA+ +  Q + SG   +      ++ G  + G  E+A   LR M + G   
Sbjct: 486 -LLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGL-- 542

Query: 384 TPNSWSII----ASGHVAKENMEKAFQCF 408
            PN++SI     A  H+A  ++ +    +
Sbjct: 543 RPNAFSITVALSACAHLASLHIGRTIHGY 571


>AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26933326-26935371 REVERSE
           LENGTH=681
          Length = 681

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 55/342 (16%)

Query: 174 PLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLE 233
           PL +N +++ Y + E  E+V      M   G+ PD F+Y   L + G   D+     +  
Sbjct: 109 PLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHG 168

Query: 234 KIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASL 293
            IE        + +   V N  +    + + +   ++  D+ ++RDAV++N +I+ YAS 
Sbjct: 169 SIEVS-----SYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASE 223

Query: 294 GKKKDMMRL---------------WKLQKDNCKKQLNREYITMLGCLVKLGDLE------ 332
           G   +   L               W +    C +  N  Y+  LG + ++ +        
Sbjct: 224 GMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGN--YVGALGLISRMRNFPTSLDPV 281

Query: 333 ------EAEKLLGQWELS--------GNTYDF--KVPNILLIGYSRKGLIEKAETMLRSM 376
                 +A  L+G   L          ++YD    V N L+  YS+   +  A  + R  
Sbjct: 282 AMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQT 341

Query: 377 VDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVT 436
            +        +W+ I SG+      E+A    +E L       G++P S  ++SIL    
Sbjct: 342 EENSLC----TWNSIISGYAQLNKSEEASHLLREMLVA-----GFQPNSITLASILPLCA 392

Query: 437 DNRDIEEVEDFVNSL--KKVMSMNRDMYLSLIKLYVRCGREV 476
              +++  ++F   +  +K       ++ SL+ +Y + G+ V
Sbjct: 393 RIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIV 434


>AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23306534-23308423 FORWARD
           LENGTH=629
          Length = 629

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 150/343 (43%), Gaps = 19/343 (5%)

Query: 155 SVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           +V+ +L+   +M + G + P  + YN+++       +      +L+ M E  ++P++ ++
Sbjct: 270 NVNDALNLFTEMDNKG-IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 328

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCE 272
              ++++     L   EKL +++  +  I  D  TYS++ N +      D+A    +   
Sbjct: 329 SALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLE 332
            K    + V YN +I  +    + ++ M L++             Y T++  L + GD +
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447

Query: 333 EAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIA 392
            A+K+  +    G   D    +ILL G  + G +EKA  +   +      P   +++I+ 
Sbjct: 448 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMI 507

Query: 393 SGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLK 452
            G      +E  +  F  +L++    KG +P   + ++++S        EE +     +K
Sbjct: 508 EGMCKAGKVEDGWDLFC-SLSL----KGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

Query: 453 KVMSM-NRDMYLSLIKLYVRCGREVDGVLESMKADNIELDEEM 494
           +  ++ N   Y +LI+  +R G          KA + EL +EM
Sbjct: 563 EDGTLPNSGTYNTLIRARLRDGD---------KAASAELIKEM 596



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 120/274 (43%), Gaps = 14/274 (5%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           +  L+NC+     +  +L+ + KM  +G+   +    + SL       +++ + +A++ +
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIV--TLSSLLNGYCHGKRISEAVALVDQ 175

Query: 203 DGV---SPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
             V    P+  ++   ++     +       L++++   G    D  TY TV N   K G
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG-CQPDLFTYGTVVNGLCKRG 234

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN-REY 318
             D AL  LKK E    + D V Y  +I    +     D + L+  + DN   + N   Y
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT-EMDNKGIRPNVVTY 293

Query: 319 ITMLGCLVKLGDLEEAEKLLG---QWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
            +++ CL   G   +A +LL    + +++ N   F     L+  + ++G + +AE +   
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA---LIDAFVKEGKLVEAEKLYDE 350

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
           M+ +   P   ++S + +G    + +++A   F+
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 384


>AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19896027-19897442 FORWARD
           LENGTH=471
          Length = 471

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 125/294 (42%), Gaps = 48/294 (16%)

Query: 199 MMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKA 258
           M+K  GV P +  Y   + +     +L    KL ++   EG I VD   YST+ +  +KA
Sbjct: 213 MLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDE-AYEGKIKVDAAIYSTLISSLIKA 271

Query: 259 GLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREY 318
           G  ++  + L++  +K  K D V YN +I+ +                   C +      
Sbjct: 272 GRSNEVSMILEEMSEKGCKPDTVTYNVLINGF-------------------CVEN----- 307

Query: 319 ITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVD 378
                      D E A ++L +    G   D    N++L  + R    E+A  +   M  
Sbjct: 308 -----------DSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPR 356

Query: 379 KGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAEN--KGWRPKSDVVSSILSWVT 436
           +G +P   S+ I+  G    E ++     F+EA  +L E   KG++P+ D +   L  + 
Sbjct: 357 RGCSPDTLSYRIVFDGLC--EGLQ-----FEEAAVILDEMLFKGYKPRRDRLEGFLQKLC 409

Query: 437 DNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVR---CGREVDGVLESMKADN 487
           ++  +E +   ++SL + ++ + D++  +I    +       +D +L ++K D 
Sbjct: 410 ESGKLEILSKVISSLHRGIAGDADVWSVMIPTMCKEPVISDSIDLLLNTVKEDG 463


>AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:360918-363050 REVERSE
           LENGTH=710
          Length = 710

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/439 (18%), Positives = 163/439 (37%), Gaps = 71/439 (16%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS 136
           +++TLR  K     L+  +W+S+KG          + LE +GR R L  A ++       
Sbjct: 71  VLQTLRLIKVPADGLRFFDWVSNKGFSHK-EQSFFLMLEFLGRARNLNVARNFL------ 123

Query: 137 DKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDV 196
                             S+++  +   K++D       ++N+++  Y      ++   +
Sbjct: 124 -----------------FSIERRSNGCVKLQDR------YFNSLIRSYGNAGLFQESVKL 160

Query: 197 LAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYV 256
              MK+ G+SP + ++   L+    R        L +++     +  D  T++T+ N + 
Sbjct: 161 FQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFC 220

Query: 257 KAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK------------------D 298
           K  + D+A    K  E      D V YN +I      GK K                  +
Sbjct: 221 KNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPN 280

Query: 299 MMRLWKLQKDNCKKQ------------LNR-------EYITMLGCLVKLGDLEEAEKLL- 338
           ++    L +  C KQ            L+R        Y T++  L +    +E + +L 
Sbjct: 281 VVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILI 340

Query: 339 -GQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVA 397
            G    +    D    NIL+  +   G ++ A  + + M++    P   S+S++      
Sbjct: 341 GGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCM 400

Query: 398 KENMEKAFQCFKEAL--AVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVM 455
           +   ++A   F E     VL      +P +   + +  ++  N   ++ E     L K  
Sbjct: 401 RNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRG 460

Query: 456 SMNRDMYLSLIKLYVRCGR 474
             +   Y +LI  + R G+
Sbjct: 461 VQDPPSYKTLITGHCREGK 479


>AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18445730-18447646 REVERSE
           LENGTH=638
          Length = 638

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 112/283 (39%), Gaps = 39/283 (13%)

Query: 140 EKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAM 199
           E V G LL+     GSV ++    + M++    +  ++ +++  + R  +  +  +VL  
Sbjct: 202 EYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQ 261

Query: 200 MKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG-------------------- 239
           MKE G+ PDI  +   L+ Y     + +   L+  +   G                    
Sbjct: 262 MKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEK 321

Query: 240 ---------------DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYN 284
                              D +TY+ + + + K G+ DK    L     K      V Y 
Sbjct: 322 RMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYM 381

Query: 285 H-MISHYASLGKKKDMMRLWKLQKDNCKKQ-LNREYITMLGCLVKLGDLEEAEKLLGQWE 342
             M++H      ++ +  + K+++  C    L    +  L C  KLG+++EA +L  + E
Sbjct: 382 QIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC--KLGEVKEAVRLWNEME 439

Query: 343 LSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTP 385
            +G +       I++ G++ +G + +A    + MV +G    P
Sbjct: 440 ANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAP 482


>AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29747102-29748832 REVERSE
           LENGTH=576
          Length = 576

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/420 (20%), Positives = 155/420 (36%), Gaps = 81/420 (19%)

Query: 59  LENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIG 118
           LE+ +  GH        +++  L    R  +A++V E M S G+ P              
Sbjct: 94  LESLVTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPD------------- 140

Query: 119 RVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVS-PLHY 177
                 SA +Y                L+N     G+V  ++  ++KM+D G+ S  + Y
Sbjct: 141 -----ASAYTY----------------LVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTY 179

Query: 178 NNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIET 237
           N ++          +    +  + + G++P+ F+Y   L +       +   KLL++I  
Sbjct: 180 NALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIV 239

Query: 238 EGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKK 297
           +G    + ++Y+ +   + K G  D A+   ++   K +K + V+YN             
Sbjct: 240 KGG-EPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYN------------- 285

Query: 298 DMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILL 357
                                  +L CL   G  EEA  LL + +           NIL+
Sbjct: 286 ----------------------ILLRCLCCDGRWEEANSLLAEMDGGDRAPSVVTYNILI 323

Query: 358 IGYSRKGLIEKAETMLRSMVDKGKTP---TPNSWSIIASGHVAKENMEKAFQCFKEALAV 414
              +  G  E+A  +L+ M  KG      T  S++ + +    +  ++   +C  E +  
Sbjct: 324 NSLAFHGRTEQALQVLKEM-SKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMIY- 381

Query: 415 LAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL-KKVMSMNRDMYLSLIKLYVRCG 473
               +  +P     ++I S    N  ++E    + SL  K      D Y S+I    R G
Sbjct: 382 ----RRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKG 437


>AT1G19520.1 | Symbols: NFD5 | pentatricopeptide (PPR)
           repeat-containing protein | chr1:6760032-6762581 FORWARD
           LENGTH=725
          Length = 725

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 107/252 (42%), Gaps = 7/252 (2%)

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
            ++ E   +  I  Y   ++ +   + +E++E++L+K+   G I  D +T + + + Y K
Sbjct: 373 GVLDEKSFNASISDYSKLIHIHAKENHIEDVERILKKMSQNG-IFPDILTATALVHMYSK 431

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNRE 317
           +G  ++A    +  +    + D   Y  MI  Y + GK K   RL K  +    K     
Sbjct: 432 SGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGKPKLGERLMKEMQAKELKASEEV 491

Query: 318 YITMLGCLVKLGDLEEAEKLLGQWEL-SGNTYDFKVPNILLIGYSRKGLIEKAETMLRSM 376
           Y+ +L    ++GD   A  +    +  S     F+  ++ +  Y + G ++KA++    M
Sbjct: 492 YMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYSLFVEAYGKAGQVDKAKSNFDEM 551

Query: 377 VDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVT 436
              G  P     + +   +  + +++KA +     L +  E  G        + ++ W+ 
Sbjct: 552 RKLGHKPDDKCIANLVRAYKGENSLDKALR-----LLLQLEKDGIEIGVITYTVLVDWMA 606

Query: 437 DNRDIEEVEDFV 448
           +   IEE E  +
Sbjct: 607 NLGLIEEAEQLL 618


>AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:1221116-1223461 REVERSE
           LENGTH=781
          Length = 781

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 147/357 (41%), Gaps = 50/357 (14%)

Query: 148 NCYVMAGSVDKS--LSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGV 205
           NC ++ G V K   +   Q    M     + +N I++ Y    Q  K+ +   +  E  V
Sbjct: 223 NC-LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYA---QSGKIDEARQLFDESPV 278

Query: 206 SPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWM------------------- 246
             D+F++   ++ Y     +E   +L +K+    +++ + M                   
Sbjct: 279 Q-DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDV 337

Query: 247 -------TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDM 299
                  T++T+   Y + G   +A    K   DK  KRD V++  MI+ Y+  G   + 
Sbjct: 338 MPCRNVSTWNTMITGYAQCGKISEA----KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393

Query: 300 MRLWKLQKDNCKKQLNR-EYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLI 358
           +RL+ +Q +    +LNR  + + L     +  LE  ++L G+    G      V N LL+
Sbjct: 394 LRLF-VQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452

Query: 359 GYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAEN 418
            Y + G IE+A  + + M  K       SW+ + +G+      E A + F+       + 
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIV----SWNTMIAGYSRHGFGEVALRFFES-----MKR 503

Query: 419 KGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSM--NRDMYLSLIKLYVRCG 473
           +G +P    + ++LS  +    +++   +  ++ +   +  N   Y  ++ L  R G
Sbjct: 504 EGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560


>AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:24011315-24012919 REVERSE
           LENGTH=534
          Length = 534

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 111/263 (42%), Gaps = 22/263 (8%)

Query: 125 SAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSP--LHYNNIMS 182
           +A   F +L + D    V  A+++ Y      D++L+ ++ MK +G + P  + +N ++S
Sbjct: 170 NARKVFSDLGEQDLV--VFNAMISGYANNSQADEALNLVKDMKLLG-IKPDVITWNALIS 226

Query: 183 LYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG--- 239
            ++     EKV ++L +M  DG  PD+ S+   ++        E      +++ T G   
Sbjct: 227 GFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYP 286

Query: 240 ---DIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKK 296
               I       +T+A  Y+K G +      +   ED  + R A     ++  Y   G  
Sbjct: 287 NSATIITLLPACTTLA--YMKHGKEIHGYSVVTGLEDHGFVRSA-----LLDMYGKCGFI 339

Query: 297 KDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNIL 356
            + M L++       K+    + +M+ C    G  ++A +L  Q E +G   D      +
Sbjct: 340 SEAMILFR----KTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAI 395

Query: 357 LIGYSRKGLIEKAETMLRSMVDK 379
           L   S  GL +  + +   M +K
Sbjct: 396 LTACSHAGLTDLGQNLFLLMQNK 418


>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2514374-2516599 REVERSE
           LENGTH=741
          Length = 741

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 116/274 (42%), Gaps = 23/274 (8%)

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G   D++ +   ++ Y     LE+  K+ +K         D ++Y+ +   Y   G  + 
Sbjct: 164 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR-----DVVSYTALIKGYASRGYIEN 218

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNREYITML 322
           A    +K  D+   +D V++N MIS YA  G  K+ + L+K + K N +       +T++
Sbjct: 219 A----QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD-ESTMVTVV 273

Query: 323 GCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKT 382
               + G +E   ++    +  G   + K+ N L+  YS+ G +E A  +   +  K   
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 383 PTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIE 442
               SW+ +  G+      ++A   F+E L       G  P    + SIL        I+
Sbjct: 334 ----SWNTLIGGYTHMNLYKEALLLFQEML-----RSGETPNDVTMLSILPACAHLGAID 384

Query: 443 E---VEDFVNSLKKVMSMNRDMYLSLIKLYVRCG 473
               +  +++   K ++    +  SLI +Y +CG
Sbjct: 385 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCG 418


>AT4G16390.1 | Symbols: SVR7 | pentatricopeptide (PPR)
           repeat-containing protein | chr4:9257985-9260093 FORWARD
           LENGTH=702
          Length = 702

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 144/338 (42%), Gaps = 21/338 (6%)

Query: 58  VLENWLQEGHAVRDQELQRI-VKTLRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLEL 116
           VL N L+     R+  L  + +K  R  K   ++ ++ + M  +G+ P    D A    +
Sbjct: 161 VLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKP----DNATFTTI 216

Query: 117 I--GRVRGL-ESAESYFQNLSD--SDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF 171
           I   R  G+ + A  +F+ +S    +       A+++ Y  AG+VD +LS   + +   +
Sbjct: 217 ISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKW 276

Query: 172 -VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
            +  + ++ ++ +Y  +  ++   ++   MK  GV P++  Y   ++S G R+      K
Sbjct: 277 RIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG-RAKRPWQAK 335

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHY 290
           ++ K         +W TY+ +   Y +A   D AL   ++ ++K      + YN ++S  
Sbjct: 336 IIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMC 395

Query: 291 ASLGKKKDMMRLWKLQKDNCKKQLNREY-----ITMLGCLVKLGDLEEAEKLLGQWELSG 345
           A      +   +++  K NC+      +     IT+  C    G + EAE  L Q   +G
Sbjct: 396 ADNRYVDEAFEIFQDMK-NCETCDPDSWTFSSLITVYAC---SGRVSEAEAALLQMREAG 451

Query: 346 NTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTP 383
                 V   ++  Y +   ++        +++ G TP
Sbjct: 452 FEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 489


>AT2G15980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:6951349-6952845 REVERSE
           LENGTH=498
          Length = 498

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 118/265 (44%), Gaps = 42/265 (15%)

Query: 154 GSVDKSLSQMQKMKDMGFVSP--LHYNNIMSLYTRTEQHEKVPDVLAMMKED-GVSPDIF 210
           G  D S+ + +KM  +G + P    +N++M  + R  + E V  +   M+E+ G SP+++
Sbjct: 225 GLDDVSVDEAKKM--IGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVY 282

Query: 211 SYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTV-----ANFYV---KAGLKD 262
           SY + + +Y AR  +   EK+ E+++  G +  D + Y+T+     +NF V   K   +D
Sbjct: 283 SYNVLMEAYCARGLMSEAEKVWEEMKVRG-VVYDIVAYNTMIGGLCSNFEVVKAKELFRD 341

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITML 322
             L        K  +   + Y H+++ Y   G     + +++  K   +K    + +T+ 
Sbjct: 342 MGL--------KGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMK---RKGFEADGLTIE 390

Query: 323 GCLVKLGDLEEAEKLLGQWEL------------SGNTYDFKVPNILLIGYSRKGLIEKAE 370
             +  L D  + ++++   ++            S N Y+  V  +        G +++A 
Sbjct: 391 ALVEGLCDDRDGQRVVEAADIVKDAVREAMFYPSRNCYELLVKRL-----CEDGKMDRAL 445

Query: 371 TMLRSMVDKGKTPTPNSWSIIASGH 395
            +   MV KG  P+  ++     G+
Sbjct: 446 NIQAEMVGKGFKPSQETYRAFIDGY 470


>AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14275800-14277551 FORWARD
           LENGTH=583
          Length = 583

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 136/320 (42%), Gaps = 23/320 (7%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           V  AL+  Y   G ++ +     +M +   V+   +N+++S + +    ++   V   M+
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVA---WNSLVSGFEQNGLADEAIQVFYQMR 200

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG-DIAVDWMTYSTVANFYVKAGL 260
           E G  PD  ++   L++      +     + + I +EG D+ V   T   + N Y + G 
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGT--ALINLYSRCGD 258

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNR-EYI 319
             KA    ++  DK  + +  A+  MIS Y + G  +  + L+   +D+C    N   ++
Sbjct: 259 VGKA----REVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFV 314

Query: 320 TMLGCLVKLGDLEEA----EKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
            +L      G +EE     +++   + L     +  V  + ++G  R G +++A   +  
Sbjct: 315 AVLSACAHAGLVEEGRSVYKRMTKSYRLIPGV-EHHVCMVDMLG--RAGFLDEAYKFIHQ 371

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWV 435
           +   GK   P  W+ +        N +   +  K  +A+  +N G      ++S+I +  
Sbjct: 372 LDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHV---MLSNIYALS 428

Query: 436 TDNRDIEEVEDFV--NSLKK 453
               ++  + D +  N+L+K
Sbjct: 429 GKTDEVSHIRDGMMRNNLRK 448


>AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:7939611-7942898 REVERSE
           LENGTH=1064
          Length = 1064

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 151/352 (42%), Gaps = 23/352 (6%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           V  AL++ Y   G++   +S      +M     + YN +++  ++    EK  ++   M 
Sbjct: 325 VCNALVSLYFHLGNL---ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
            DG+ PD  +    + +  A   L   ++L     T+   A +      + N Y K    
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFASNNKIEGALLNLYAKCADI 440

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
           + AL Y  + E      + V +N M+  Y  L   ++  R+++  +          Y ++
Sbjct: 441 ETALDYFLETE----VENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
           L   ++LGDLE  E++  Q   +    +  V ++L+  Y++ G ++ A  +L     K  
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
                SW+ + +G+      +KA   F++ L     ++G R     +++ +S     + +
Sbjct: 557 V----SWTTMIAGYTQYNFDDKALTTFRQML-----DRGIRSDEVGLTNAVSACAGLQAL 607

Query: 442 EEVEDFVNSLKKVMSMNRDMYL--SLIKLYVRCGREVDGVL---ESMKADNI 488
           +E +  +++   V   + D+    +L+ LY RCG+  +  L   ++   DNI
Sbjct: 608 KEGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI 658



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 12/268 (4%)

Query: 141 KVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMM 200
           K+ GALLN Y     ++ +L    + +    V    +N ++  Y   +       +   M
Sbjct: 425 KIEGALLNLYAKCADIETALDYFLETEVENVVL---WNVMLVAYGLLDDLRNSFRIFRQM 481

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
           + + + P+ ++Y   L +     DLE  E++  +I  + +  ++    S + + Y K G 
Sbjct: 482 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI-IKTNFQLNAYVCSVLIDMYAKLGK 540

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT 320
            D A   L +   K    D V++  MI+ Y         +  ++   D   +        
Sbjct: 541 LDTAWDILIRFAGK----DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTN 596

Query: 321 MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKG 380
            +     L  L+E +++  Q  +SG + D    N L+  YSR G IE++        ++ 
Sbjct: 597 AVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF----EQT 652

Query: 381 KTPTPNSWSIIASGHVAKENMEKAFQCF 408
           +     +W+ + SG     N E+A + F
Sbjct: 653 EAGDNIAWNALVSGFQQSGNNEEALRVF 680


>AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:18941118-18942524 FORWARD
           LENGTH=468
          Length = 468

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 148/347 (42%), Gaps = 57/347 (16%)

Query: 196 VLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFY 255
           V  +MK  G+S  + +  I +NS     +LE  E LL      G +  D +TY+T+   Y
Sbjct: 2   VRGLMKFPGISTKLLN--ISVNSLCKFRNLERAETLLIDGIRLG-VLPDVITYNTLIKGY 58

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMM--RLWKLQKDNCKKQ 313
            +    D+A    ++  +   + D   YN +IS     G  K++M  R+ +L  +     
Sbjct: 59  TRFIGIDEAYAVTRRMREAGIEPDVTTYNSLIS-----GAAKNLMLNRVLQLFDEMLHSG 113

Query: 314 LNRE---YITMLGCLVKLGDLEEAEKLLGQ-WELSG-----NTYD--------------- 349
           L+ +   Y T++ C  KLG   EA K+L +   L+G     +TY+               
Sbjct: 114 LSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNA 173

Query: 350 ---FK-----------VPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGH 395
              FK             NIL+ G  +   +   + M+R +   G TP   +++ +   +
Sbjct: 174 IELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMY 233

Query: 396 VAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVM 455
              + +EK  Q F +      + +G+        +++S +      EE  + ++ L +  
Sbjct: 234 FKTKRIEKGLQLFLK-----MKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSG 288

Query: 456 SMNRDM--YLSLIKLYVRCGR--EVDGVLESMKADNIELDEEMEEIL 498
           + ++D+  Y +L+ LY + G    VD +LE ++   ++ D+    I+
Sbjct: 289 TRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTII 335



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/269 (18%), Positives = 116/269 (43%), Gaps = 5/269 (1%)

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPL--HYNNIMSLYTRTEQHEKVPDVLAMM 200
           +  L++CY   G   ++   + +   +  + P    YN ++    ++   +   ++   +
Sbjct: 121 YNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHL 180

Query: 201 KEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGL 260
           K   V P++ +Y I +N       + +++ ++ +++  G    + +TY+T+   Y K   
Sbjct: 181 KSR-VKPELMTYNILINGLCKSRRVGSVDWMMRELKKSG-YTPNAVTYTTMLKMYFKTKR 238

Query: 261 KDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMR-LWKLQKDNCKKQLNREYI 319
            +K L    K + + Y  D  A   ++S     G+ ++    + +L +   + Q    Y 
Sbjct: 239 IEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTRSQDIVSYN 298

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           T+L    K G+L+  + LL + E+ G   D     I++ G    G    AE  L  + + 
Sbjct: 299 TLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKHLACIGEM 358

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCF 408
           G  P+  + + +  G     ++++A + F
Sbjct: 359 GMQPSVVTCNCLIDGLCKAGHVDRAMRLF 387



 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 122/279 (43%), Gaps = 11/279 (3%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIE 236
           YN ++  YTR    ++   V   M+E G+ PD+ +Y   ++       L  + +L +++ 
Sbjct: 51  YNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEML 110

Query: 237 TEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAV-AYNHMISHYASLGK 295
             G ++ D  +Y+T+ + Y K G   +A   L +    A     +  YN ++      G 
Sbjct: 111 HSG-LSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGH 169

Query: 296 KKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNI 355
             + + L+K  K   K +L   Y  ++  L K   +   + ++ + + SG T +      
Sbjct: 170 TDNAIELFKHLKSRVKPEL-MTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTT 228

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVL 415
           +L  Y +   IEK   +   M  +G T    +   + S  +     E+A++C  E +   
Sbjct: 229 MLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELV--- 285

Query: 416 AENKGWRPKSDVVS--SILSWVTDNRDIEEVEDFVNSLK 452
               G R + D+VS  ++L+    + +++ V+D +  ++
Sbjct: 286 --RSGTRSQ-DIVSYNTLLNLYFKDGNLDAVDDLLEEIE 321


>AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23987202-23988740 REVERSE
           LENGTH=512
          Length = 512

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 111/271 (40%), Gaps = 8/271 (2%)

Query: 144 GALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
           G+LL+ + +   +  + S +  M   G+  + + YN ++    +  +     ++L  M++
Sbjct: 145 GSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEK 204

Query: 203 DGVSPDIFSYRICLNS--YGAR-SDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAG 259
            G+  D+ +Y   L    Y  R SD   M + + K     D+    +T++ + + +VK G
Sbjct: 205 KGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDV----VTFTALIDVFVKQG 260

Query: 260 LKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYI 319
             D+A    K+    +   + V YN +I+     G+  D  + + L            Y 
Sbjct: 261 NLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYN 320

Query: 320 TMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           T++    K   ++E  KL  +    G   D    N L+ GY + G +  A  +   MV +
Sbjct: 321 TLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSR 380

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKE 410
             TP   +  I+  G      +E A   F +
Sbjct: 381 RVTPDIITHCILLHGLCVNGEIESALVKFDD 411



 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/260 (19%), Positives = 107/260 (41%), Gaps = 14/260 (5%)

Query: 153 AGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
            G+  ++ S  ++    GF+  + + +  +L+      + +P ++   +    + ++  Y
Sbjct: 28  GGAAARAFSDYREKLRTGFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRY 87

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCE 272
                        E +    +K+E  G I+ D  +++ + + + +      AL  L K  
Sbjct: 88  -------------ETVIYFSQKMELYG-ISHDLYSFTILIHCFCRCSRLSFALSVLGKMM 133

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLE 332
              Y+   V +  ++  +  + +  D   L  L   +  +     Y T++  L K G+L 
Sbjct: 134 KLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELN 193

Query: 333 EAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIA 392
            A +LL + E  G   D    N LL G    G    A  MLR M+ +   P   +++ + 
Sbjct: 194 IALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALI 253

Query: 393 SGHVAKENMEKAFQCFKEAL 412
              V + N+++A + +KE +
Sbjct: 254 DVFVKQGNLDEAQELYKEMI 273


>AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3948886-3950859 FORWARD
           LENGTH=657
          Length = 657

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 164/375 (43%), Gaps = 47/375 (12%)

Query: 110 RAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDM 169
           +A +L+L  R+RG           S  D  E+ +GAL++ Y  AGS D++L    +M   
Sbjct: 303 KAGRLDLAERIRGDMVK-------SGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSK 355

Query: 170 GF-VSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRI-----CLNSYGARS 223
           G  V+ + YN+I+         E    VL  M    +  D F+  I     C N Y  + 
Sbjct: 356 GLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGY-VKE 414

Query: 224 DLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCED--------KA 275
            +E   ++ EK   E     D + ++T+ + +V    +DK L     C D        + 
Sbjct: 415 AVEFQRQISEKKLVE-----DIVCHNTLMHHFV----RDKKL----ACADQILGSMLVQG 461

Query: 276 YKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAE 335
              DA+++  +I  Y   GK +  + ++       K      Y +++  L K G    AE
Sbjct: 462 LSLDAISFGTLIDGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAE 521

Query: 336 KLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSM--VDKGKTPTPNSWSIIAS 393
            ++   E+     D    N LL    + G +E+A+ +L  M   D  K+ +  +++I+ +
Sbjct: 522 AVVNAMEIK----DIVTYNTLLNESLKTGNVEEADDILSKMQKQDGEKSVSLVTFNIMIN 577

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL-K 452
                 + EKA    KE L  + E +G  P S    ++++  + +R  E+V +  + L  
Sbjct: 578 HLCKFGSYEKA----KEVLKFMVE-RGVVPDSITYGTLITSFSKHRSQEKVVELHDYLIL 632

Query: 453 KVMSMNRDMYLSLIK 467
           + ++ +  +YLS+++
Sbjct: 633 QGVTPHEHIYLSIVR 647


>AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16169315-16171153 FORWARD
           LENGTH=612
          Length = 612

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 256 VKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLN 315
           V A  +   +++ +K  +   +RD +A+N MIS YA +G+ ++ + ++ L +    K   
Sbjct: 181 VTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNG 240

Query: 316 REYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRS 375
              I++L    +LG L++        E +      ++   L+  Y++ G +EKA  +   
Sbjct: 241 VAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWG 300

Query: 376 MVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWV 435
           M +K       +WS   +G       EK  + F      L +  G  P +    S+L   
Sbjct: 301 MEEK----NVYTWSSALNGLAMNGFGEKCLELFS-----LMKQDGVTPNAVTFVSVLRGC 351

Query: 436 TDNRDIEEVEDFVNSLKKVMSMNRDM--YLSLIKLYVRCGREVDGV 479
           +    ++E +   +S++    +   +  Y  L+ LY R GR  D V
Sbjct: 352 SVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAV 397


>AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17618948-17620588 FORWARD
           LENGTH=546
          Length = 546

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 154/390 (39%), Gaps = 50/390 (12%)

Query: 77  IVKTLRTRKRFTQALQVSEWMSSKGL-----CPILPGDRAVQLELIGR-VRGLESAESYF 130
           I++ L  RK F+  + V + M  +G+     C  +  D  V++  + R +   E +ES+ 
Sbjct: 157 ILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFG 216

Query: 131 QNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQH 190
              S    TE  + ALL C      V  + S     K         YN ++S +++  + 
Sbjct: 217 VKCS----TESFN-ALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEV 271

Query: 191 EKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYST 250
           E++  VL  M E G  PD  SY   +   G    + +  ++ + I+ +G++  D   Y+ 
Sbjct: 272 EEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVP-DANVYNA 330

Query: 251 VANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWK------ 304
           +   ++ A   D+++ Y ++  D+  + +   Y+ ++S      K  D + +++      
Sbjct: 331 MICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRG 390

Query: 305 ----------LQKDNCKKQLNREYITML------GC----------LVKLGDLEEAEKLL 338
                       K  C        + +       GC          L +L    +   LL
Sbjct: 391 VLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLL 450

Query: 339 GQW---ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGH 395
             W   + SG   D +V   ++ G    G +E A  ++   + KG  P    +S ++S  
Sbjct: 451 NVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKL 510

Query: 396 VAKENMEKAFQCF---KEALAVLAENKGWR 422
           +A    E A++ F   K+A A       WR
Sbjct: 511 MASNKTELAYKLFLKIKKARATENARSFWR 540



 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 122/270 (45%), Gaps = 20/270 (7%)

Query: 167 KDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLE 226
           KD+G      Y+ I+    R +    + DVL  M  +GV+PD+    I ++S+     + 
Sbjct: 149 KDVG-----SYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVR 203

Query: 227 NMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKR----DAVA 282
              +L E+ E+ G      +  ST +   +   L +++ +   K    A K     D+ +
Sbjct: 204 RAIELFEESESFG------VKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCS 257

Query: 283 YNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWE 342
           YN MIS ++ LG+ ++M ++ K   ++        Y  ++  L + G + ++ ++    +
Sbjct: 258 YNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIK 317

Query: 343 LSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENME 402
             GN  D  V N ++  +      +++    R M+D+   P   ++S + SG +    + 
Sbjct: 318 HKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVS 377

Query: 403 KAFQCFKEALAVLAENKGWRPKSDVVSSIL 432
            A + F+E L+     +G  P + +V+S L
Sbjct: 378 DALEIFEEMLS-----RGVLPTTGLVTSFL 402


>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3791454-3793883 REVERSE
           LENGTH=809
          Length = 809

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 163/394 (41%), Gaps = 32/394 (8%)

Query: 90  ALQVSEWMSSKGLCP-------ILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKV 142
           AL++ + M  + L P       +LP   A++L  +G+     +  S F +L +      +
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN------I 273

Query: 143 HGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKE 202
             AL++ Y   GS++ +      M +   VS   +N+++  Y + E  ++   +   M +
Sbjct: 274 STALVDMYAKCGSLETARQLFDGMLERNVVS---WNSMIDAYVQNENPKEAMLIFQKMLD 330

Query: 203 DGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKD 262
           +GV P   S    L++     DLE   + + K+  E  +  +    +++ + Y K    D
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLER-GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389

Query: 263 KALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITML 322
            A     K +     R  V++N MI  +A  G+  D +  +   +    K     Y++++
Sbjct: 390 TAASMFGKLQS----RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVI 445

Query: 323 GCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKT 382
             + +L     A+ + G    S    +  V   L+  Y++ G I  A  +   M ++  T
Sbjct: 446 TAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVT 505

Query: 383 PTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIE 442
               +W+ +  G+      + A + F+E      +    +P      S++S  + +  +E
Sbjct: 506 ----TWNAMIDGYGTHGFGKAALELFEE-----MQKGTIKPNGVTFLSVISACSHSGLVE 556

Query: 443 EVEDFVNSLKKVMS--MNRDMYLSLIKLYVRCGR 474
                   +K+  S  ++ D Y +++ L  R GR
Sbjct: 557 AGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGR 590


>AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:12441393-12443225 FORWARD
           LENGTH=581
          Length = 581

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 39/296 (13%)

Query: 228 MEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMI 287
           M++L  +I   G ++ D +  +T+ + Y K G     LI   K  D+   RD  ++N +I
Sbjct: 128 MDQLHCQINRRG-LSADSLLCTTLLDAYSKNG----DLISAYKLFDEMPVRDVASWNALI 182

Query: 288 SHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNT 347
           +   S  +  + M L+K  +    ++     +  LG    LGD++E E +   +    + 
Sbjct: 183 AGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGY----SN 238

Query: 348 YDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQC 407
            +  V N  +  YS+ G ++KA  +      K    T   W+ + +G        +A + 
Sbjct: 239 DNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVT---WNTMITGFAVHGEAHRALEI 295

Query: 408 FKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVED----FVNSLKKVMSMNRDMYL 463
           F +      E+ G +P  DV  S L+ +T  R    VE     F N   K +  N   Y 
Sbjct: 296 FDK-----LEDNGIKP-DDV--SYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYG 347

Query: 464 SLIKLYVRCG--REVDGVLESMK-------------ADNIELDEEMEEILNSRLQQ 504
            ++ L  R G  RE   ++ SM              A  I  D EM EI +  +++
Sbjct: 348 CVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKE 403


>AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11246375-11247763 FORWARD
           LENGTH=462
          Length = 462

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 246 MTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKL 305
           + Y   +  ++ A   D A  Y  K  DK  ++D VA+N +I+ +A  GK ++ + L+  
Sbjct: 22  LIYVQNSLLHLYANCGDVASAY--KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTE 79

Query: 306 QKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGL 365
                 K      +++L    K+G L   +++       G T +    N+LL  Y+R G 
Sbjct: 80  MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGR 139

Query: 366 IEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFK 409
           +E+A+T+   MVDK       SW+ +  G       ++A + FK
Sbjct: 140 VEEAKTLFDEMVDKNSV----SWTSLIVGLAVNGFGKEAIELFK 179


>AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:337965-340442 FORWARD
           LENGTH=825
          Length = 825

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 125/295 (42%), Gaps = 18/295 (6%)

Query: 105 ILPG-DRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQM 163
           +LPG + AV    +G+V        +     D++    V   LL  Y     +D +    
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGF-----DTNPFLTVSNVLLKSYCEVRRLDLACVLF 207

Query: 164 QKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARS 223
           +++ +   V+   +N +++ Y +   + +   +   M++ G  P  F++   L +     
Sbjct: 208 EEIPEKDSVT---FNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLH 264

Query: 224 DLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAY 283
           D   + + L  +      + D    + + +FY K    D+ L   +   D+  + D V+Y
Sbjct: 265 DFA-LGQQLHALSVTTGFSRDASVGNQILDFYSK---HDRVL-ETRMLFDEMPELDFVSY 319

Query: 284 NHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWEL 343
           N +IS Y+   + +  +  ++  +     + N  + TML     L  L+   +L  Q  L
Sbjct: 320 NVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALL 379

Query: 344 SGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAK 398
           +       V N L+  Y++  + E+AE + +S+  +    T  SW+ + SG+V K
Sbjct: 380 ATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR----TTVSWTALISGYVQK 430


>AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4227975-4229630 REVERSE
           LENGTH=551
          Length = 551

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 125/303 (41%), Gaps = 12/303 (3%)

Query: 130 FQNLSDSDKTEKVHGALLNCYVMA-------GSVDKSLSQMQKMKDMGFVSPLHYNNIMS 182
           F+   +S+   +VHG L + ++          ++D+ L   +K  D+   S      IM 
Sbjct: 74  FKRSCESESFRQVHG-LYSAFIRRLREAKKFSTIDEVLQYQKKFDDIK--SEDFVIRIML 130

Query: 183 LYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIA 242
           LY  +   E    +   M E      + S+   L++Y     L+   K  +++  +  I 
Sbjct: 131 LYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGIT 190

Query: 243 VDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL 302
            D +TY+T+     + G  D  L   ++ E   ++ D +++N ++  +       +  R+
Sbjct: 191 PDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRI 250

Query: 303 WKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSR 362
           W L K        R Y + +  L +     +A  L+   +  G + D    N L+  Y  
Sbjct: 251 WDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRV 310

Query: 363 KGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEAL--AVLAENKG 420
              +E+       M +KG TP   ++ ++      K ++++A +  +EA+   +L+    
Sbjct: 311 DNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNM 370

Query: 421 WRP 423
           ++P
Sbjct: 371 YKP 373


>AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2761195-2764281 REVERSE
           LENGTH=1028
          Length = 1028

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 149/359 (41%), Gaps = 71/359 (19%)

Query: 177 YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLE-------NME 229
           +N+++S+Y+   +  KV      + E+ + P+ F++ I L++    +++E       +M 
Sbjct: 128 WNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMI 187

Query: 230 KL-LEKIETEGDIAVD----------------WMT------YSTVANFYVKAGLKDKALI 266
           K+ LE+    G   VD                W+       ++ + + YVKAGL ++A++
Sbjct: 188 KMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVL 247

Query: 267 YLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRL-----------WKLQ-----KDNC 310
             ++  D+ ++ D +A+  +I+ Y  LGK KD   L           W +      K  C
Sbjct: 248 VFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGC 307

Query: 311 KKQLNREYITMLGCLVK-----LGDLEEAEKLLGQWELS----------GNTYDFKVPNI 355
           +      +  M    VK     LG +  A  ++   +L           G   +  V + 
Sbjct: 308 ETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSS 367

Query: 356 LLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVL 415
           L+  YS+   +E A  +  ++ +K        W+ +  G+       K  + F +     
Sbjct: 368 LVSMYSKCEKMEAAAKVFEALEEKNDV----FWNAMIRGYAHNGESHKVMELFMD----- 418

Query: 416 AENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVN-SLKKVMSMNRDMYLSLIKLYVRCG 473
            ++ G+       +S+LS    + D+E    F +  +KK ++ N  +  +L+ +Y +CG
Sbjct: 419 MKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCG 477


>AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9472763-9474803 FORWARD
           LENGTH=656
          Length = 656

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 36/209 (17%)

Query: 278 RDAVAYNHMISHYASLGKKKDMMRLWKLQK--DNCKKQLNREYITMLGCLVKLGDLEEAE 335
           ++ + +N ++     +G  KD  R+ +  +  D   +     Y  ML C V+  + E+A+
Sbjct: 90  KNTITWNSLL-----IGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQ 144

Query: 336 KLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGH 395
               +        D    N ++ GY+R+G +EKA  +  SM++K +     SW+ + SG+
Sbjct: 145 SFFDRMPFK----DAASWNTMITGYARRGEMEKARELFYSMMEKNEV----SWNAMISGY 196

Query: 396 VAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSW---VTDNRDIEEVEDFVNSLK 452
           +   ++EKA   FK A                V  +++W   +T     ++VE    ++ 
Sbjct: 197 IECGDLEKASHFFKVA---------------PVRGVVAWTAMITGYMKAKKVE-LAEAMF 240

Query: 453 KVMSMNRDM--YLSLIKLYVRCGREVDGV 479
           K M++N+++  + ++I  YV   R  DG+
Sbjct: 241 KDMTVNKNLVTWNAMISGYVENSRPEDGL 269


>AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10496228-10498192 FORWARD
           LENGTH=654
          Length = 654

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 43/347 (12%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           V  A ++ +V   SVD +    ++M +    +   +N ++S + ++   +K   +   M+
Sbjct: 89  VGTATVDMFVKCNSVDYAAKVFERMPERDATT---WNAMLSGFCQSGHTDKAFSLFREMR 145

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEG-DIAVDWMTYSTVANFYV---- 256
            + ++PD  +    + S    +  E   KLLE +   G  + VD     TVAN ++    
Sbjct: 146 LNEITPDSVTVMTLIQS----ASFEKSLKLLEAMHAVGIRLGVD--VQVTVANTWISTYG 199

Query: 257 KAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNR 316
           K G  D A +  +  +     R  V++N M   Y+  G+  D   L+ L        L  
Sbjct: 200 KCGDLDSAKLVFEAIDRG--DRTVVSWNSMFKAYSVFGEAFDAFGLYCLM-------LRE 250

Query: 317 EYITMLGCLVKLGDLEEAEKLLGQWELS-------GNTYDFKVPNILLIGYSRKGLIEKA 369
           E+   L   + L    +  + L Q  L        G   D +  N  +  YS+     + 
Sbjct: 251 EFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKS----ED 306

Query: 370 ETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVS 429
               R + D   + T  SW+++ SG+  K +M++A   F   +       G +P    + 
Sbjct: 307 TCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMI-----KSGEKPDLVTLL 361

Query: 430 SILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYL---SLIKLYVRCG 473
           S++S       + E   ++++   +    RD  +   +LI +Y +CG
Sbjct: 362 SLISGCGKFGSL-ETGKWIDARADIYGCKRDNVMICNALIDMYSKCG 407


>AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23106600-23108399 REVERSE
           LENGTH=599
          Length = 599

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 97/218 (44%), Gaps = 6/218 (2%)

Query: 81  LRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDS--DK 138
           LR+RK+ + A+++   M SKG CP +     + +    +   +E+A  YF ++ DS    
Sbjct: 344 LRSRKK-SDAIKLFHVMKSKGPCPNVRS-YTIMIRDFCKQSSMETAIEYFDDMVDSGLQP 401

Query: 139 TEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVL 197
              V+  L+  +     +D     +++M++ G       YN ++ L    +  E    + 
Sbjct: 402 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIY 461

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
             M ++ + P I ++ + + SY    + E    + E++  +G I  D  +Y+ +    + 
Sbjct: 462 NKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKG-ICPDDNSYTVLIRGLIG 520

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGK 295
            G   +A  YL++  DK  K   + YN   + +   G+
Sbjct: 521 EGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQ 558


>AT4G01570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:679487-681904 FORWARD
           LENGTH=805
          Length = 805

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 125/285 (43%), Gaps = 22/285 (7%)

Query: 146 LLNCYVMAGSVDKSLSQMQKMKDMG-FVSPLHYNNIM-SLYTRTEQHEKVPDVLAMMKED 203
           LL+  + +G  + +L  +  M+++G  ++P  Y++++ +L  + E    +  +  +++  
Sbjct: 133 LLDSLIRSGKFESALGVLDYMEELGDCLNPSVYDSVLIALVKKHELRLALSILFKLLEAS 192

Query: 204 GVSPDIFSYRICLNSY--GA-----------RSDLEN-MEKLLEKIETEGDIAVDWMTYS 249
               D  + R+ + SY  G            R+D+ +  +++ EK++       D  +Y+
Sbjct: 193 DNHSDDDTGRVIIVSYLPGTVAVNELLVGLRRADMRSEFKRVFEKLKGMKRFKFDTWSYN 252

Query: 250 TVANFYVKAGLKDKALIYLKKCEDKA------YKRDAVAYNHMISHYASLGKKKDMMRLW 303
              + +   G  D AL   K+ ++++      +  D   YN +I      GK KD + +W
Sbjct: 253 ICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVW 312

Query: 304 KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRK 363
              K +  +  N  Y  ++    K   +++A ++ G+ + +G   D  V N LL G  + 
Sbjct: 313 DELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKA 372

Query: 364 GLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENMEKAFQCF 408
             + +A  +   MV +G   +  +++I+  G       E  F  F
Sbjct: 373 RKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLF 417


>AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15750929-15752962 FORWARD
           LENGTH=677
          Length = 677

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 158/377 (41%), Gaps = 44/377 (11%)

Query: 120 VRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKM-----------KD 168
           V+  +S  ++F       KT+ +H  ++    ++G +  +LS    +           ++
Sbjct: 15  VKQYQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHITYARKLFEE 74

Query: 169 MGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVS--PDIFSYRICLNSYGARSDLE 226
           M   S L YN ++ +Y R   +     V   M  +GV   PD ++Y     + G   +L+
Sbjct: 75  MPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAG---ELK 131

Query: 227 NMEKLLEKIETEGDIAVDWM-----TYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAV 281
           +M+     +   G I   W        + +   Y+  G  + A    +   D    RD +
Sbjct: 132 SMKL---GLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMA----RDVFDVMKNRDVI 184

Query: 282 AYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLE---EAEKLL 338
           ++N MIS Y   G   D + ++    +      +   ++ML     L DLE      KL+
Sbjct: 185 SWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLV 244

Query: 339 GQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAK 398
            +  L       +V N L+  Y + G +++A    R + D+ +     +W+ + +G+   
Sbjct: 245 EEKRLGDK---IEVKNALVNMYLKCGRMDEA----RFVFDRMERRDVITWTCMINGYTED 297

Query: 399 ENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVN-SLKKVMSM 457
            ++E A +     L  L + +G RP +  ++S++S   D   + + +     ++++ +  
Sbjct: 298 GDVENALE-----LCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYS 352

Query: 458 NRDMYLSLIKLYVRCGR 474
           +  +  SLI +Y +C R
Sbjct: 353 DIIIETSLISMYAKCKR 369


>AT3G15200.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5117489-5119060 REVERSE
           LENGTH=523
          Length = 523

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 136/321 (42%), Gaps = 17/321 (5%)

Query: 160 LSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVL-AMMKEDGVSPDIFSYRICLNS 218
           LSQ+   + +   S + YN I+ +  +  + E+   V   M K DG   +  +Y + LN 
Sbjct: 129 LSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEK-TYEVLLNR 187

Query: 219 YGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKR 278
           Y A   ++    + E+   E  I  D + +  +  +  +    + A   L     + +  
Sbjct: 188 YAAAHKVDEAVGVFER-RKEFGIDDDLVAFHGLLMWLCRYKHVEFAET-LFCSRRREFGC 245

Query: 279 DAVAYNHMISHYASLGKKKDMMRLWK-LQKDNCKKQLNREYITMLGCLVKLGDLEEAEKL 337
           D  A N +++ +  LG   +  R WK +    C+  +   Y TM+  L K G L +A +L
Sbjct: 246 DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDV-VSYGTMINALTKKGKLGKAMEL 304

Query: 338 L-GQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHV 396
               W+   N  D K+ N ++     K  I +A  + R + +KG  P   +++ +     
Sbjct: 305 YRAMWDTRRNP-DVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLC 363

Query: 397 AKENMEKAFQCFKEALAVLAENKG--WRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKV 454
                EK ++  +E      E KG    P     S +L +   ++D++ V + +   K  
Sbjct: 364 KIRRTEKVWELVEE-----MELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERM--AKNK 416

Query: 455 MSMNRDMYLSLIKLYVRCGRE 475
             M  D+Y  + +LYV+  +E
Sbjct: 417 CEMTSDLYNLMFRLYVQWDKE 437


>AT2G17670.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7674420-7675575 FORWARD
           LENGTH=349
          Length = 349

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 76/170 (44%)

Query: 195 DVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANF 254
           D++  + E    PD ++Y   L       DL  + + ++++  + D+  D ++++ + + 
Sbjct: 180 DLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDN 239

Query: 255 YVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQL 314
              +    +A+  + K  +  +K D   YN ++  + +L K  + + ++K  K+   +  
Sbjct: 240 VCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPD 299

Query: 315 NREYITMLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKG 364
              Y T++  L K G +EEA   L     +G   D      L+ G  RKG
Sbjct: 300 QITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKG 349


>AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17231975-17233948 REVERSE
           LENGTH=657
          Length = 657

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 161/410 (39%), Gaps = 40/410 (9%)

Query: 46  SPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRKRFTQALQVSEWMSSKGLCPI 105
           SPL  PS SV   L N      A       +++++L    +  QA++V    SS      
Sbjct: 23  SPLKPPSCSVA--LNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQESS------ 74

Query: 106 LPGDRAVQLELI--GRVRGLESAESYFQNLSD--SDKTEKVHGALLNCYVMAGSVDKSLS 161
            P  +  +L ++  G    L  A    +++ D  SD+   +   L+  Y   GSVD +  
Sbjct: 75  -PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK 133

Query: 162 QMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY----RICLN 217
              K +         +N +    T     E+V  +   M   GV  D F+Y    + C+ 
Sbjct: 134 VFDKTRKRTIYV---WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190

Query: 218 SYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYK 277
           S    + L   +++   +   G  +  ++  +T+ + Y + G  D    Y          
Sbjct: 191 SECTVNHLMKGKEIHAHLTRRGYSSHVYIM-TTLVDMYARFGCVD----YASYVFGGMPV 245

Query: 278 RDAVAYNHMISHYASLGKKKDMMRLWKLQ----KDNCKKQLNREYITMLGCLVKLGDLEE 333
           R+ V+++ MI+ YA  GK  + +R ++      KD+    +    +++L     L  LE+
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT--MVSVLQACASLAALEQ 303

Query: 334 AEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIAS 393
            + + G     G      V + L+  Y R G +E  + +   M D+       SW+ + S
Sbjct: 304 GKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVV----SWNSLIS 359

Query: 394 GHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEE 443
            +      +KA Q F+E LA      G  P      S+L   +    +EE
Sbjct: 360 SYGVHGYGKKAIQIFEEMLA-----NGASPTPVTFVSVLGACSHEGLVEE 404


>AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:12712884-12715100 FORWARD
           LENGTH=738
          Length = 738

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 124/263 (47%), Gaps = 27/263 (10%)

Query: 123 LESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF-VSPLHYNNIM 181
           L+SA   F  + + D       +++N +V  GS DK+L   +KM+      S +    ++
Sbjct: 182 LDSACKVFTTIKEKDVVS--WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239

Query: 182 SLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDI 241
           S   +    E    V + ++E+ V+ ++      L+ Y     +E+ ++L + +E +   
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK--- 296

Query: 242 AVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMR 301
             D +T++T+ + Y  +   + A    ++  +   ++D VA+N +IS Y   GK  + + 
Sbjct: 297 --DNVTWTTMLDGYAISEDYEAA----REVLNSMPQKDIVAWNALISAYEQNGKPNEALI 350

Query: 302 LW---KLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQWELS-----GNTYDFKVP 353
           ++   +LQK+    Q+    ++ L    ++G LE     LG+W  S     G   +F V 
Sbjct: 351 VFHELQLQKNMKLNQIT--LVSTLSACAQVGALE-----LGRWIHSYIKKHGIRMNFHVT 403

Query: 354 NILLIGYSRKGLIEKAETMLRSM 376
           + L+  YS+ G +EK+  +  S+
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSV 426


>AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19832969-19834909 REVERSE
           LENGTH=646
          Length = 646

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCL---VKLG 329
           DK  +R  V++N MIS Y+  G  KD + +++  K   K  +   Y+T++  L    +LG
Sbjct: 232 DKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK---KGDIRPNYVTLVSVLPAISRLG 288

Query: 330 DLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPN--S 387
            LE  E L    E SG   D  + + L+  YS+ G+IEKA  +        + P  N  +
Sbjct: 289 SLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE------RLPRENVIT 342

Query: 388 WSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDF 447
           WS + +G         A  CF +         G RP      ++L+  +    +EE   +
Sbjct: 343 WSAMINGFAIHGQAGDAIDCFCK-----MRQAGVRPSDVAYINLLTACSHGGLVEEGRRY 397

Query: 448 VNSLKKV 454
            + +  V
Sbjct: 398 FSQMVSV 404


>AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:860695-863343 REVERSE
           LENGTH=882
          Length = 882

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 148/338 (43%), Gaps = 17/338 (5%)

Query: 142 VHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMK 201
           V  AL++ Y   G + ++     +M     VS   +N+++S Y+    +E+  ++   +K
Sbjct: 143 VGNALVDMYSRMGLLTRARQVFDEMPVRDLVS---WNSLISGYSSHGYYEEALEIYHELK 199

Query: 202 EDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLK 261
              + PD F+    L ++G    ++  + L      +  +    +  + +   Y+K    
Sbjct: 200 NSWIVPDSFTVSSVLPAFGNLLVVKQGQGL-HGFALKSGVNSVVVVNNGLVAMYLKFRRP 258

Query: 262 DKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITM 321
             A    ++  D+   RD+V+YN MI  Y  L   ++ +R++    D  K  L      +
Sbjct: 259 TDA----RRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVL 314

Query: 322 LGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGK 381
             C   L DL  A+ +      +G   +  V NIL+  Y++ G +  A  +  SM  K  
Sbjct: 315 RAC-GHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 382 TPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDI 441
                SW+ I SG++   ++ +A + FK  + ++ E +       ++ S+ + + D +  
Sbjct: 374 V----SWNSIISGYIQSGDLMEAMKLFK--MMMIMEEQADHITYLMLISVSTRLADLKFG 427

Query: 442 EEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGV 479
           + +    N +K  + ++  +  +LI +Y +CG   D +
Sbjct: 428 KGLHS--NGIKSGICIDLSVSNALIDMYAKCGEVGDSL 463


>AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24681550-24683514 FORWARD
           LENGTH=654
          Length = 654

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 125/303 (41%), Gaps = 15/303 (4%)

Query: 145 ALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKED 203
           ++LN  V     D      Q M   G V  +H Y  +     +   + K   +L  M   
Sbjct: 169 SILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228

Query: 204 GVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDK 263
           G+ P+++ Y I +      + +E  EK+ E ++  G +  +  TYS + + Y K G   +
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHG-VLPNLYTYSAMIDGYCKTGNVRQ 287

Query: 264 ALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLG 323
           A    K+        + V +  ++  +    K ++++    L     K  ++   + +  
Sbjct: 288 AYGLYKEILVAELLPNVVVFGTLVDGFC---KARELVTARSLFVHMVKFGVDPN-LYVYN 343

Query: 324 CLV----KLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDK 379
           CL+    K G++ EA  LL + E    + D     IL+ G   +  + +A  + + M ++
Sbjct: 344 CLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNE 403

Query: 380 GKTPTPNSWSIIASGHVAKENMEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNR 439
              P+  +++ +  G+  + NME+A     E  A      G  P     S+++    + R
Sbjct: 404 RIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTA-----SGVEPNIITFSTLIDGYCNVR 458

Query: 440 DIE 442
           DI+
Sbjct: 459 DIK 461


>AT3G13160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4229994-4231178 REVERSE
           LENGTH=394
          Length = 394

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 115/266 (43%), Gaps = 18/266 (6%)

Query: 156 VDKSLSQMQKMKDM---GFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSY 212
           V++ L +  K  +M   GFV+      I++LY R    E    V   M E        S+
Sbjct: 90  VEEILEEQNKYPNMSKEGFVA-----RIINLYGRVGMFENAQKVFDEMPERNCKRTALSF 144

Query: 213 RICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCE 272
              LN+       + +E + +++  +  I  D  +Y+T+       G   +A+  + + E
Sbjct: 145 NALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIE 204

Query: 273 DKAYKRDAVAYNHMISHYASLGKKKDMMRLW-KLQKDNCKKQLNREYITMLGCLVKLGDL 331
           +K  K D + +N ++    + GK ++  ++W ++ + N K+ + R Y   L  L      
Sbjct: 205 NKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDI-RSYNARLLGLAMENKS 263

Query: 332 EEA----EKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNS 387
           EE     +KL G  EL  + + F     ++ G+  +G +++A T  + +   G  P    
Sbjct: 264 EEMVSLFDKLKGN-ELKPDVFTFTA---MIKGFVSEGKLDEAITWYKEIEKNGCRPLKFV 319

Query: 388 WSIIASGHVAKENMEKAFQCFKEALA 413
           ++ +        ++E A++  KE  A
Sbjct: 320 FNSLLPAICKAGDLESAYELCKEIFA 345


>AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1955959-1959051 FORWARD
           LENGTH=1030
          Length = 1030

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 153/350 (43%), Gaps = 31/350 (8%)

Query: 115 ELIGRVRG---LESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGF 171
           E+   VRG   L S E   + LS   + E V   L  C+ +     +  + + K KD GF
Sbjct: 128 EITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWV-KQKD-GF 185

Query: 172 VSPLH-YNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEK 230
              +  YN ++S+       + V ++++ M+++G   DI ++ I ++ YG    +     
Sbjct: 186 SHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGLL 245

Query: 231 LLEKIETEGDIAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKA-------YKR--DAV 281
           + EK+   G   +D   Y+ +      AG  D AL + K+  +K        YK   D +
Sbjct: 246 VFEKMRKSG-FELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCI 304

Query: 282 AYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYITMLGCLVKLGDLEEAEKLLGQW 341
           A +  +    S+    DM+R+ ++ + +    L + +     C+   G ++EA +L+ + 
Sbjct: 305 AKSEKVDVVQSIA--DDMVRICEISEHDAFGYLLKSF-----CVS--GKIKEALELIREL 355

Query: 342 ELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKENM 401
           +      D K   IL+ G  R   +  A  ++  ++ + K    N + II SG++ + ++
Sbjct: 356 KNKEMCLDAKYFEILVKGLCRANRMVDALEIV-DIMKRRKLDDSNVYGIIISGYLRQNDV 414

Query: 402 EKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSL 451
            KA + F+     + +  G  P+    + I+  +   +  E+  +  N +
Sbjct: 415 SKALEQFE-----VIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEM 459


>AT2G30780.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:13116547-13118059 FORWARD
           LENGTH=452
          Length = 452

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 103/475 (21%), Positives = 192/475 (40%), Gaps = 82/475 (17%)

Query: 32  TTVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKTLRTRK------ 85
           T++  +  +L  R+S L D  L++     N  ++   V DQ+ Q + +T R         
Sbjct: 20  TSLPAHHTDLVQRVSILKDELLTI----GNSKEKFQNVLDQKGQWLFRTYRDGAGILELM 75

Query: 86  -----RFTQALQVSEWM-SSKGLC-PILPGDRAVQLELIGRVRGLESAESYFQNLSDSD- 137
                R   ALQV EW    K  C P+   + A  +++ GR R +  A   F   +    
Sbjct: 76  DQLFPRHYLALQVLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRM 135

Query: 138 KTEKVHGALLNCYVMAGSVDKSLSQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVL 197
           +T  V+ +L++ Y+  G  ++  S  +  +                              
Sbjct: 136 QTASVYNSLMSVYMWNGLAEECQSLFKDFR------------------------------ 165

Query: 198 AMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGDIAVDWMTYSTVANFYVK 257
              ++   +P + +Y I ++ YG    ++NME   E+++ +  +  + +TY+ +   Y+ 
Sbjct: 166 ---RQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQ-KVKLPPNSVTYNFLIAGYMT 221

Query: 258 AGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNC---KKQL 314
           A   DK     ++ +    + D   Y  M+  YA+ G    M  ++++ KD        L
Sbjct: 222 AWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMYEVIKDQVGVNSGPL 281

Query: 315 NREYITMLGCLVKLGD-LEEAEKLLGQWELSGNTYDFKVP--NILLIG-YSRKGLIEKAE 370
            R  I    C   + D +++ E LL    LSG  Y   +P  N+LLI  Y+++  +E  E
Sbjct: 282 VRAMICAY-CKKAVEDRVQKIENLLSL--LSGEEY---LPWLNVLLIRLYAQEDFVEAME 335

Query: 371 TMLRSMVDKGKTPTPNSW--SIIASGHVAKENMEKAFQCFK-EALAVL---AENKGWRPK 424
           + +    ++      +S   +IIA+           F+C + + LA     AE+ GW+  
Sbjct: 336 SKINEAFEQKTCVNKSSIMRAIIAA----------YFRCNEVDNLANFVKRAESAGWKLC 385

Query: 425 SDVVSSILSWVTDNRDIEEVEDFVNSLKKV-MSMNRDMYLSLIKLYVRCGREVDG 478
             +    +      +  EE+E  VN + +    +    +  +IK Y   G E D 
Sbjct: 386 RSLYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDA 440