Miyakogusa Predicted Gene

Lj0g3v0287199.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0287199.1 Non Chatacterized Hit- tr|D8QPC1|D8QPC1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.27,1e-17,seg,NULL; Dna2,DNA replication factor Dna2,
N-terminal,CUFF.19180.1
         (417 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08840.2 | Symbols: emb2411 | DNA replication helicase, putat...   238   6e-63
AT1G08840.1 | Symbols: emb2411 | DNA replication helicase, putat...   238   6e-63

>AT1G08840.2 | Symbols: emb2411 | DNA replication helicase, putative
           | chr1:2829579-2838369 REVERSE LENGTH=1315
          Length = 1315

 Score =  238 bits (607), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 173/445 (38%), Positives = 220/445 (49%), Gaps = 78/445 (17%)

Query: 1   MPPRKKPNNXXXXXXXXXXXXXKKPLPQPSKYGIQHFFDRHXXXXXXXXXXXXXXXXXSA 60
           MPPRKKP +                  QPS +GIQ  F RH                   
Sbjct: 1   MPPRKKPKSSALKSNKQSSANHSS---QPSTFGIQQLFLRHIQNSQSTSNS--------- 48

Query: 61  GEVLSSSQXXXXXXXXXXXXXXXXXVETPS-------------------LSEVSPEISKS 101
                +S                  V TP                    L+E SP+ISK+
Sbjct: 49  ----HTSTADPVDQQNVNGLASDTAVLTPQNPLGTSNEKPDESKDMDQQLTEASPKISKN 104

Query: 102 VSRNKRVKFSPGMFIKPSQDDGADEVTWKISPVNERLQAVSKQMPEIIKALAESSRINLS 161
           + R     FSPGM IK SQDD   E+TWKISPVNERL+A +K +P+++  L E+S     
Sbjct: 105 LKR-----FSPGMLIKQSQDDCGGEITWKISPVNERLRAAAKNIPKMMD-LTENSLGKQC 158

Query: 162 PIHGCSEDETFRDKDGRVEKLLTNTSIPNGSAKPLVPMSKLGPQRINPGRDVEFSVNSTA 221
           P  G +          +VE+ L++ S    S +P    +++  +R+NP  D EF + +T 
Sbjct: 159 PTSGIT---------SKVEQWLSSPS-KKASKRPAFATNRV-MERVNPSPDAEFEIVNT- 206

Query: 222 VSSSGVSGDESPFRTPPSLSFRQDKVQLAKGVEHSGPSDQLFLRQHKKALLELLDQVEDA 281
            SSSG     SPF+TPPSLS   +K  L   V  SG    +   QHKKALLELLDQVED 
Sbjct: 207 -SSSG----NSPFQTPPSLSCPHNK--LPCTVTCSGACGSMGAGQHKKALLELLDQVEDV 259

Query: 282 ITVDNDAICNKTTYSFKSQDGIANDPARA---------NHAVERTKSHKPKEATSVLSNS 332
           I VD+     KTT       GI    AR          + AV+      PK   S+  +S
Sbjct: 260 IAVDD-----KTTDDV----GIVMPQARVKDDIISSVVDCAVDEGPVSLPKMQNSINPDS 310

Query: 333 SYLALEVSEKYRPANSSSSQCSYKVLRLLNEKTGEERVVNLRDEWSYSVIAPGDTVNIIG 392
            +L LEVSEK    +SS  QC YKVLRLL+E TG E  + L DEW YS ++PGD++N+IG
Sbjct: 311 YFLVLEVSEKRGSGSSSKGQCPYKVLRLLDEHTGVECALYLWDEWFYSTVSPGDSINVIG 370

Query: 393 QFDEGGNCDIDHDNNFLIVHPDTLV 417
           +FD  G CD+D  NNFLIVHPDTLV
Sbjct: 371 EFDGDGKCDVDRQNNFLIVHPDTLV 395


>AT1G08840.1 | Symbols: emb2411 | DNA replication helicase, putative
           | chr1:2829579-2838369 REVERSE LENGTH=1296
          Length = 1296

 Score =  238 bits (607), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 173/445 (38%), Positives = 220/445 (49%), Gaps = 78/445 (17%)

Query: 1   MPPRKKPNNXXXXXXXXXXXXXKKPLPQPSKYGIQHFFDRHXXXXXXXXXXXXXXXXXSA 60
           MPPRKKP +                  QPS +GIQ  F RH                   
Sbjct: 1   MPPRKKPKSSALKSNKQSSANHSS---QPSTFGIQQLFLRHIQNSQSTSNS--------- 48

Query: 61  GEVLSSSQXXXXXXXXXXXXXXXXXVETPS-------------------LSEVSPEISKS 101
                +S                  V TP                    L+E SP+ISK+
Sbjct: 49  ----HTSTADPVDQQNVNGLASDTAVLTPQNPLGTSNEKPDESKDMDQQLTEASPKISKN 104

Query: 102 VSRNKRVKFSPGMFIKPSQDDGADEVTWKISPVNERLQAVSKQMPEIIKALAESSRINLS 161
           + R     FSPGM IK SQDD   E+TWKISPVNERL+A +K +P+++  L E+S     
Sbjct: 105 LKR-----FSPGMLIKQSQDDCGGEITWKISPVNERLRAAAKNIPKMMD-LTENSLGKQC 158

Query: 162 PIHGCSEDETFRDKDGRVEKLLTNTSIPNGSAKPLVPMSKLGPQRINPGRDVEFSVNSTA 221
           P  G +          +VE+ L++ S    S +P    +++  +R+NP  D EF + +T 
Sbjct: 159 PTSGITS---------KVEQWLSSPS-KKASKRPAFATNRV-MERVNPSPDAEFEIVNT- 206

Query: 222 VSSSGVSGDESPFRTPPSLSFRQDKVQLAKGVEHSGPSDQLFLRQHKKALLELLDQVEDA 281
            SSSG     SPF+TPPSLS   +K  L   V  SG    +   QHKKALLELLDQVED 
Sbjct: 207 -SSSG----NSPFQTPPSLSCPHNK--LPCTVTCSGACGSMGAGQHKKALLELLDQVEDV 259

Query: 282 ITVDNDAICNKTTYSFKSQDGIANDPARA---------NHAVERTKSHKPKEATSVLSNS 332
           I VD+     KTT       GI    AR          + AV+      PK   S+  +S
Sbjct: 260 IAVDD-----KTTDDV----GIVMPQARVKDDIISSVVDCAVDEGPVSLPKMQNSINPDS 310

Query: 333 SYLALEVSEKYRPANSSSSQCSYKVLRLLNEKTGEERVVNLRDEWSYSVIAPGDTVNIIG 392
            +L LEVSEK    +SS  QC YKVLRLL+E TG E  + L DEW YS ++PGD++N+IG
Sbjct: 311 YFLVLEVSEKRGSGSSSKGQCPYKVLRLLDEHTGVECALYLWDEWFYSTVSPGDSINVIG 370

Query: 393 QFDEGGNCDIDHDNNFLIVHPDTLV 417
           +FD  G CD+D  NNFLIVHPDTLV
Sbjct: 371 EFDGDGKCDVDRQNNFLIVHPDTLV 395