Miyakogusa Predicted Gene
- Lj0g3v0286629.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0286629.2 CUFF.19122.2
(249 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-ri... 252 2e-67
AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 252 2e-67
AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 238 2e-63
AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 238 3e-63
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 222 2e-58
AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RN... 209 1e-54
AT4G25500.3 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 191 4e-49
AT4G25500.2 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 177 6e-45
AT5G52040.4 | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP ... 176 2e-44
AT5G52040.3 | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP ... 172 1e-43
AT2G46610.2 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RN... 163 8e-41
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 64 8e-11
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 64 8e-11
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 64 8e-11
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 64 9e-11
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 61 7e-10
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin... 58 8e-09
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 57 8e-09
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 57 8e-09
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 57 1e-08
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 55 3e-08
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM... 54 7e-08
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 54 9e-08
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 54 1e-07
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 53 2e-07
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 53 2e-07
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 52 3e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 52 3e-07
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 51 8e-07
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 50 1e-06
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 50 2e-06
>AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich
splicing factor 35 | chr4:13025168-13027243 FORWARD
LENGTH=350
Length = 350
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/167 (74%), Positives = 147/167 (88%), Gaps = 2/167 (1%)
Query: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
MKPVFCGN ++DAR+ D+ERLFR+YGKVERVDMK+GFAFVYMEDERDAE AIR LDR EF
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 61 GRKGRRIRVEWTKQER--DSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDP 118
GRKGRR+RVEWTK ER D R SR+ +S+M+PSKTLF+INFD +TRTRDLE+HF+P
Sbjct: 61 GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120
Query: 119 YGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAI 165
YGKI N+RIRRNFAFIQYE+ EDATRAL+A+N SK MD+VI+VEYA+
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAV 167
>AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13025168-13027243 FORWARD LENGTH=350
Length = 350
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/167 (74%), Positives = 147/167 (88%), Gaps = 2/167 (1%)
Query: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
MKPVFCGN ++DAR+ D+ERLFR+YGKVERVDMK+GFAFVYMEDERDAE AIR LDR EF
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 61 GRKGRRIRVEWTKQER--DSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDP 118
GRKGRR+RVEWTK ER D R SR+ +S+M+PSKTLF+INFD +TRTRDLE+HF+P
Sbjct: 61 GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120
Query: 119 YGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAI 165
YGKI N+RIRRNFAFIQYE+ EDATRAL+A+N SK MD+VI+VEYA+
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAV 167
>AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=357
Length = 357
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/166 (71%), Positives = 140/166 (84%), Gaps = 1/166 (0%)
Query: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
MKPVFCGN ++DAR+SD+ERLFR+YGKVERVDMK+GFAFVYMEDERDAE AIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 61 GRKGRRIRVEWTKQERDSRRSADSRKPASNMKPS-KTLFIINFDPVHTRTRDLERHFDPY 119
GR GRR+RVEWTK +R + + +S+ KTLF+INFD +TRTRDLERHF+PY
Sbjct: 61 GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120
Query: 120 GKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAI 165
GKI N+RIRRNFAFIQYE+ EDATRAL+ATN SK MD+VI+VEYA+
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAV 166
>AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=356
Length = 356
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/166 (71%), Positives = 140/166 (84%), Gaps = 1/166 (0%)
Query: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
MKPVFCGN ++DAR+SD+ERLFR+YGKVERVDMK+GFAFVYMEDERDAE AIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 61 GRKGRRIRVEWTKQERDSRRSADSRKPASNMKPS-KTLFIINFDPVHTRTRDLERHFDPY 119
GR GRR+RVEWTK +R + + +S+ KTLF+INFD +TRTRDLERHF+PY
Sbjct: 61 GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120
Query: 120 GKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAI 165
GKI N+RIRRNFAFIQYE+ EDATRAL+ATN SK MD+VI+VEYA+
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAV 166
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/165 (62%), Positives = 137/165 (83%), Gaps = 2/165 (1%)
Query: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
M+PVF GN +++ RQSD+ERLF +YG+V+RVDMKSG+AFVY EDERDAE AIR+LD F
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 61 GRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYG 120
G + RR+ VEW K ER R D++ P SN+KP+KTLF+INFDP+ T+ D+E+HF+PYG
Sbjct: 61 GYEKRRLSVEWAKGER-GRPRGDAKAP-SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYG 118
Query: 121 KISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAI 165
K++N+RIRRNF+F+Q+E+ EDAT+ALEAT SK +DRV++VEYA+
Sbjct: 119 KVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYAL 163
>AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr2:19136769-19138492 REVERSE
LENGTH=250
Length = 250
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 129/165 (78%)
Query: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
M+ V+ GN D+D R SD+ERLF ++G+V+RVDMKSG+AFVY EDERDAE AIRR D T F
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60
Query: 61 GRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYG 120
G R++ VEW K + R K SN +P+KTLF+INFDP+ TR RD+ERHF+PYG
Sbjct: 61 GYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYG 120
Query: 121 KISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAI 165
K+ N+R+RRNFAF+Q+ + EDAT+AL++T+ SK +D+V++VEYA+
Sbjct: 121 KVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYAL 165
>AT4G25500.3 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13025850-13027243 FORWARD LENGTH=317
Length = 317
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/132 (74%), Positives = 114/132 (86%), Gaps = 2/132 (1%)
Query: 36 GFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQER--DSRRSADSRKPASNMKP 93
GFAFVYMEDERDAE AIR LDR EFGRKGRR+RVEWTK ER D R SR+ +S+M+P
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP 62
Query: 94 SKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSK 153
SKTLF+INFD +TRTRDLE+HF+PYGKI N+RIRRNFAFIQYE+ EDATRAL+A+N SK
Sbjct: 63 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSK 122
Query: 154 FMDRVITVEYAI 165
MD+VI+VEYA+
Sbjct: 123 LMDKVISVEYAV 134
>AT4G25500.2 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13026073-13027243 FORWARD LENGTH=309
Length = 309
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 108/126 (85%), Gaps = 2/126 (1%)
Query: 42 MEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQER--DSRRSADSRKPASNMKPSKTLFI 99
MEDERDAE AIR LDR EFGRKGRR+RVEWTK ER D R SR+ +S+M+PSKTLF+
Sbjct: 1 MEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFV 60
Query: 100 INFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVI 159
INFD +TRTRDLE+HF+PYGKI N+RIRRNFAFIQYE+ EDATRAL+A+N SK MD+VI
Sbjct: 61 INFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVI 120
Query: 160 TVEYAI 165
+VEYA+
Sbjct: 121 SVEYAV 126
>AT5G52040.4 | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr5:21131881-21133318 FORWARD
LENGTH=324
Length = 324
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 106/131 (80%), Gaps = 1/131 (0%)
Query: 36 GFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPS- 94
GFAFVYMEDERDAE AIR LDR E+GR GRR+RVEWTK +R + + +S+
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 62
Query: 95 KTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKF 154
KTLF+INFD +TRTRDLERHF+PYGKI N+RIRRNFAFIQYE+ EDATRAL+ATN SK
Sbjct: 63 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKL 122
Query: 155 MDRVITVEYAI 165
MD+VI+VEYA+
Sbjct: 123 MDKVISVEYAV 133
>AT5G52040.3 | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr5:21131791-21133318 FORWARD
LENGTH=329
Length = 329
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 105/130 (80%), Gaps = 1/130 (0%)
Query: 37 FAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPS-K 95
FAFVYMEDERDAE AIR LDR E+GR GRR+RVEWTK +R + + +S+ K
Sbjct: 10 FAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSK 69
Query: 96 TLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFM 155
TLF+INFD +TRTRDLERHF+PYGKI N+RIRRNFAFIQYE+ EDATRAL+ATN SK M
Sbjct: 70 TLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM 129
Query: 156 DRVITVEYAI 165
D+VI+VEYA+
Sbjct: 130 DKVISVEYAV 139
>AT2G46610.2 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr2:19136769-19137858 REVERSE
LENGTH=224
Length = 224
Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 103/135 (76%)
Query: 31 VDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASN 90
+ + +G+AFVY EDERDAE AIRR D T FG R++ VEW K + R K SN
Sbjct: 5 LHIDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSN 64
Query: 91 MKPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATN 150
+P+KTLF+INFDP+ TR RD+ERHF+PYGK+ N+R+RRNFAF+Q+ + EDAT+AL++T+
Sbjct: 65 QRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTH 124
Query: 151 LSKFMDRVITVEYAI 165
SK +D+V++VEYA+
Sbjct: 125 NSKLLDKVVSVEYAL 139
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMKS--GFAFVYMEDERDAEYAIRRLDRTEFG 61
++ G+L + +SD+ LF RYG ++R+ + S GFAF+Y +A A L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANL- 78
Query: 62 RKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGK 121
G +I++E+ +PA KP K+L++ P + DLE F +GK
Sbjct: 79 -NGSQIKIEYA-------------RPA---KPCKSLWVGGIGP-NVSKDDLEEEFSKFGK 120
Query: 122 ISNIRI--RRNFAFIQYESLEDATRA 145
I + R R AFI Y ++DA +A
Sbjct: 121 IEDFRFLRERKTAFIDYYEMDDALQA 146
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMKS--GFAFVYMEDERDAEYAIRRLDRTEFG 61
++ G+L + +SD+ LF RYG ++R+ + S GFAF+Y +A A L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANL- 78
Query: 62 RKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGK 121
G +I++E+ +PA KP K+L++ P + DLE F +GK
Sbjct: 79 -NGSQIKIEYA-------------RPA---KPCKSLWVGGIGP-NVSKDDLEEEFSKFGK 120
Query: 122 ISNIRI--RRNFAFIQYESLEDATRA 145
I + R R AFI Y ++DA +A
Sbjct: 121 IEDFRFLRERKTAFIDYYEMDDALQA 146
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMKS--GFAFVYMEDERDAEYAIRRLDRTEFG 61
++ G+L + +SD+ LF RYG ++R+ + S GFAF+Y +A A L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANL- 78
Query: 62 RKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGK 121
G +I++E+ +PA KP K+L++ P + DLE F +GK
Sbjct: 79 -NGSQIKIEYA-------------RPA---KPCKSLWVGGIGP-NVSKDDLEEEFSKFGK 120
Query: 122 ISNIRI--RRNFAFIQYESLEDATRA 145
I + R R AFI Y ++DA +A
Sbjct: 121 IEDFRFLRERKTAFIDYYEMDDALQA 146
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMKS--GFAFVYMEDERDAEYAIRRLDRTEFG 61
++ G+L + +SD+ LF RYG ++R+ + S GFAF+Y +A A L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANL- 78
Query: 62 RKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGK 121
G +I++E+ +PA KP K+L++ P + DLE F +GK
Sbjct: 79 -NGSQIKIEYA-------------RPA---KPCKSLWVGGIGP-NVSKDDLEEEFSKFGK 120
Query: 122 ISNIRI--RRNFAFIQYESLEDATRA 145
I + R R AFI Y ++DA +A
Sbjct: 121 IEDFRFLRERKTAFIDYYEMDDALQA 146
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 32/178 (17%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERV--------DMKSGFAFVYMEDERDAEYAIRRL 55
V+ G LD + + LF + G V V ++ + F+ E DA+YAI+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 56 DRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERH 115
+ + G+ IRV Q++ S + LFI N DP + L
Sbjct: 87 NMIKL--HGKPIRVNKASQDKKS------------LDVGANLFIGNLDP-DVDEKLLYDT 131
Query: 116 FDPYGKI-SNIRIRRN--------FAFIQYESLEDATRALEATNLSKFMDRVITVEYA 164
F +G I SN +I R+ F FI Y+S E + A+E+ +R ITV YA
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15672331 REVERSE LENGTH=290
Length = 290
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRK 63
++ G L R D+ERLF RYG+V VDMK +AFV D RDA+ A LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 64 GRRIRVEWTKQERDSRRSADSRKP 87
G RI VE+++ R DSR P
Sbjct: 71 GSRITVEFSRGAPRGSRDFDSRGP 94
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMK-----SGFAFVYMEDERDAEYAIRRLDRT 58
V+ GNL D R+ +VE LF +YG V ++D+K G+AFV +D RDAE AI D
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 59 EFGRKGRRIRVEWTKQERDSRRSAD 83
+F G R+RVE RRS+D
Sbjct: 69 DF--DGHRLRVELAHG---GRRSSD 88
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMK-----SGFAFVYMEDERDAEYAIRRLDRT 58
V+ GNL D R+ +VE LF +YG V ++D+K G+AFV +D RDAE AI D
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 59 EFGRKGRRIRVEWTKQERDSRRSAD 83
+F G R+RVE RRS+D
Sbjct: 69 DF--DGHRLRVELAHG---GRRSSD 88
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMK-----SGFAFVYMEDERDAEYAIRRLDRT 58
V+ GNL D R+ +VE LF +YG V ++D+K G+AFV +D RDAE AI D
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 59 EFGRKGRRIRVEWTKQERDSRRSAD 83
+F G R+RVE RRS+D
Sbjct: 69 DF--DGHRLRVELAHG---GRRSSD 88
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 2 KPVFCGNLDFDARQSDVERLFRRYGKVERVDMK-----SGFAFVYMEDERDAEYAIRRLD 56
+ ++ GNL D R+ +VE LF +YG V ++D+K G+AFV ED RDA+ AI D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 57 RTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNM----------------KPSKTLFII 100
+F G +RVE R S A + S+ ++
Sbjct: 67 GYDF--DGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVV 124
Query: 101 NFDPVHTRTRDLERHFDPYGKISNIRI----RRNFAFIQYESLEDATRALEATNL 151
+ P +DL+ H G++ ++ R + Y S ED AL+ T
Sbjct: 125 SGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALDDTEF 179
>AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
(RRM/RBD/RNP motifs) family protein with retrovirus
zinc finger-like domain | chr3:19834557-19836507
REVERSE LENGTH=284
Length = 284
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRK 63
++ G L R D+ERLF RYG+V VDMK +AFV D RDA+ A LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 64 GRRIRVEWTKQERDSRRSADSRKP 87
G RI VE ++ R SR P
Sbjct: 71 GSRITVEASRGAPRGSRDNGSRGP 94
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 24/168 (14%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGK-------VERVDMKSGFAFVYMEDERDAEYAIRRLD 56
+F NLD + F +G V+ G+ FV +E A+ AI +L+
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 57 RTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHF 116
K + +QERDS +N +++ N T DL+ F
Sbjct: 186 GMLLNDKQVYVGPFLRRQERDS---------TANKTKFTNVYVKNLAE-STTDDDLKNAF 235
Query: 117 DPYGKISNIRIRRN-------FAFIQYESLEDATRALEATNLSKFMDR 157
YGKI++ + ++ F F+ +E+ +DA RA+E+ N KF D+
Sbjct: 236 GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMK-----SGFAFVYMEDERDAEYAIRRLDRT 58
++ GNL D R+ +VE LF +YG V ++D+K G+AFV ED RDA+ AI D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 59 EFGRKGRRIRVEWTKQERDSRRSA 82
+F G +RVE R S A
Sbjct: 69 DF--DGHHLRVELAHGGRRSSHDA 90
>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
Length = 268
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMK-----SGFAFVYMEDERDAEYAIRRLDRT 58
++ GNL D R+ +VE LF +YG + +D+K G+AFV ED RDA+ AI D
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 59 EFGRKGRRIRVEWTKQERDSRRSAD--SRKPASNMKPSKTL---FIINFDPVHTRTRDLE 113
+F G R+RVE R S D S +++ PS+ ++ P +DL+
Sbjct: 69 DF--DGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSASWQDLK 126
Query: 114 RHFDPYGKISNIRI---RRNFA----FIQYESLEDATRALEATNL 151
H G + + R+ + + Y+ ++ A R L+AT
Sbjct: 127 DHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEF 171
>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
Length = 256
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMK-----SGFAFVYMEDERDAEYAIRRLDRT 58
++ GNL D R+ +VE LF +YG + +D+K G+AFV ED RDA+ AI D
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 59 EFGRKGRRIRVEWTKQERDSRRSAD--SRKPASNMKPSKTL---FIINFDPVHTRTRDLE 113
+F G R+RVE R S D S +++ PS+ ++ P +DL+
Sbjct: 69 DF--DGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSASWQDLK 126
Query: 114 RHFDPYGKISNIRI---RRNFA----FIQYESLEDATRALEATNL 151
H G + + R+ + + Y+ ++ A R L+AT
Sbjct: 127 DHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEF 171
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDM-------KSGFAFVYMEDERDAEYAIRRLD 56
V+ NL ++ ++F +G + GF FV E+ DA A+ L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 57 RTEFGRKGRRIRVEWTKQERDS---RRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLE 113
F K + K ER++ ++ S K A++ L++ N D T + L
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK-LR 344
Query: 114 RHFDPYGKISNIRIRRN-------FAFIQYESLEDATRALEATNLSKFMDRVITVEYA 164
HF P+G I++ ++ R+ F+ + + E+ATRA+ N + + + V A
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDM-------KSGFAFVYMEDERDAEYAIRRLD 56
V+ NL ++ ++F +G + GF FV E+ DA A+ L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 57 RTEFGRKGRRIRVEWTKQERDS---RRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLE 113
F K + K ER++ ++ S K A++ L++ N D T + L
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK-LR 344
Query: 114 RHFDPYGKISNIRIRRN-------FAFIQYESLEDATRALEATNLSKFMDRVITVEYA 164
HF P+G I++ ++ R+ F+ + + E+ATRA+ N + + + V A
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVERVDMKS-------GFAFVYMEDERDAEYAIRRLD 56
+F NLD + F G + + + G+ FV + E A+ AI +L+
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 57 RTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHF 116
K + K+ER+S +AD K +++ N T +L+ F
Sbjct: 196 GKVLNDKQIFVGPFLRKEERES--AADKMK-------FTNVYVKNLSEA-TTDDELKTTF 245
Query: 117 DPYGKISNIRIRRN-------FAFIQYESLEDATRALEATNLSKFMDR 157
YG IS+ + R+ F F+ +E+ EDA RA+EA N KF D+
Sbjct: 246 GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 24/177 (13%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVE--------RVDMKSGFAFVYMEDERDAEYAIRRL 55
+F GNL +D + LF + G VE D GF FV M +AE A+ +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 56 DRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERH 115
+R + GR + V + R S R P +P+ +++ N P LE+
Sbjct: 212 NRYDL--NGRLLTV----NKAAPRGSRPERAPRV-YEPAFRVYVGNL-PWDVDNGRLEQL 263
Query: 116 FDPYGKISNIRI--------RRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYA 164
F +GK+ R+ R F F+ +++ A+ A + R I V A
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 24/177 (13%)
Query: 4 VFCGNLDFDARQSDVERLFRRYGKVE--------RVDMKSGFAFVYMEDERDAEYAIRRL 55
+F GNL +D + LF + G VE D GF FV M +AE A+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 56 DRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERH 115
+ F GRR+ V R + R + + + +++ N P + LER
Sbjct: 175 N--SFEVNGRRLTV-----NRAAPRGSRPERQPRVYDAAFRIYVGNL-PWDVDSGRLERL 226
Query: 116 FDPYGKISNIRI--------RRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYA 164
F +GK+ + R+ R F F+Q + + A+ A + R I V A
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283