Miyakogusa Predicted Gene

Lj0g3v0286589.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286589.1 Non Chatacterized Hit- tr|H9KQU5|H9KQU5_APIME
Uncharacterized protein OS=Apis mellifera GN=Rab3gap1
,25.14,3e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Rab3
GTPase-activating protein catalytic subuni,CUFF.19117.1
         (540 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58510.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   674   0.0  

>AT5G58510.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast
           hits to 17322 proteins in 780 species: Archae - 12;
           Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
           5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:23648287-23654421 REVERSE LENGTH=963
          Length = 963

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/479 (67%), Positives = 389/479 (81%), Gaps = 15/479 (3%)

Query: 41  LASSWERFISEIEAVCRLWMSDGPKNLLEKGAVHLEYSGNLYKVKSELKYAMKSYCMEYY 100
           LASSWERFIS+IEA CR W++DGPKNL+EKGAV +E S NL+ VK ELK   KSYCME+Y
Sbjct: 28  LASSWERFISDIEATCRQWLADGPKNLVEKGAVAVEDSKNLFTVKHELKNVAKSYCMEFY 87

Query: 101 FETKPDGKP----ADWNFDLHDVQLCFGVKEFLVIAPQSASGVVLDPPEASKLLSAVAIA 156
           F+   +G       +WN + HD+QLCFGVK+FL+IAPQSASGV+LD PE+SKLLSAVAIA
Sbjct: 88  FQIDNNGSQQAGIGNWNSNSHDLQLCFGVKDFLLIAPQSASGVLLDTPESSKLLSAVAIA 147

Query: 157 LSNCSSLWPAFVPVHDPSRKAYIGIQSMGTVFTRRFEADRIGSQVPIKLMHLEGLYELFV 216
           LSNC SLWPAFVPVHDPSRKAYIGIQ+MGTVFTRRFEADR+GSQVP+KLMHLEGLYELFV
Sbjct: 148 LSNCGSLWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRVGSQVPVKLMHLEGLYELFV 207

Query: 217 SKFAYSTLDLSVHDFKVRFAMKLTFRTLPYDDDYMKG-----FGEKITKSGENLTGEMSN 271
           SKF YS +D S+H F+V F M+LT++T PYD++  +       G+K + + E+   E  N
Sbjct: 208 SKFVYSGVDFSMHTFRVHFMMRLTYQTFPYDEEDEEIDTDEVMGDK-SDTAEHYGSESRN 266

Query: 272 GKQWDDDCSWSEWYSAEDPVKGFELITIWSEKMVESSMEMAELENASPHEAEKWLIS--L 329
              WDDDC WSEWYSAEDP++GFEL+  W+++ VES++EMAELENASPH+AEKW++   L
Sbjct: 267 KVLWDDDCPWSEWYSAEDPLRGFELVVTWADRTVESTLEMAELENASPHDAEKWILHPIL 326

Query: 330 RP---EGPKGNRIGFASQLHLLVDALEMSFEAQFIEDFVSVENPGSDNLKSSMVIPSPAV 386
            P   +   G RI FASQL  LV+AL+ SF AQF+EDFVSVENP S+NLK+S+VIP P+V
Sbjct: 327 SPYLGDPSHGKRIDFASQLLCLVEALDSSFSAQFMEDFVSVENPSSENLKTSVVIPPPSV 386

Query: 387 RDRVLKELFIEGVQLSKFADDRHKTSRAIKGAPLESLFAQFCLHSLWFGNCNIRAIAVLW 446
            DRV+K+LF EG +L  F    H+ SRA+K APLESLF QFCLHSLWFGNCNIRAIA LW
Sbjct: 387 LDRVIKDLFREGSKLPDFTKGEHRLSRALKAAPLESLFTQFCLHSLWFGNCNIRAIAFLW 446

Query: 447 IEFVREVRWCWEESQPLPRMPANGTIDLSTCLINQKLQMLAICIEKKCQLNEDFQDCIG 505
           IEFVREVRWCWEE+QPLP+MP +G+IDLS+CLINQKL +LAICIEKK ++NE+F DCIG
Sbjct: 447 IEFVREVRWCWEETQPLPKMPIDGSIDLSSCLINQKLHLLAICIEKKREMNEEFLDCIG 505