Miyakogusa Predicted Gene

Lj0g3v0286539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286539.1 Non Chatacterized Hit- tr|J3M9R3|J3M9R3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,29.48,6e-17,seg,NULL,CUFF.19130.1
         (412 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   167   2e-41

>AT5G44150.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13
           growth stages; Has 35333 Blast hits to 34131 proteins in
           2444 species: Archae - 798; Bacteria - 22429; Metazoa -
           974; Fungi - 991; Plants - 531; Viruses - 0; Other
           Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:17763797-17765101 REVERSE LENGTH=355
          Length = 355

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 136/213 (63%), Gaps = 20/213 (9%)

Query: 1   MDVKALAKSKRAHTQHHTKKSHGNHNAQTTNDAAKVPLGKQQVIEKKTHHP-RAQGSSAL 59
           MD K+LAKSKRAHT HH+KKSH  H  +    + K P   +++   +T  P +++  SAL
Sbjct: 1   MDSKSLAKSKRAHTLHHSKKSHSVHKPKVPGVSEKNP---EKLQGNQTKSPVQSRRVSAL 57

Query: 60  PTNWDRYEEE---GLDSGLVGISDDVVPKSKGADFRHLVAEAQ----SQAENTFQGSPSF 112
           P+NWDRY++E     DS +   SD +VPKSKGAD+ HL++EAQ    S+ EN      S 
Sbjct: 58  PSNWDRYDDELDAAEDSSISLHSDVIVPKSKGADYLHLISEAQAESNSKIENNLDCLSSL 117

Query: 113 DELLPWEYGVGFGSMLAVRGEGMLSWVGDDNFVVEDKATANH-EVSFTSLNLHAIAEALA 171
           D+LL  E+    GSM++ RGEG+LSW+ DDNFVVE+  + ++ E  F SLNL+ +A+ L 
Sbjct: 118 DDLLHDEFSRVVGSMISARGEGILSWMEDDNFVVEEDGSGSYQEPGFLSLNLNVLAKTLE 177

Query: 172 KVDLSKKLFIESDLLP--------TELGGNEEP 196
            VDL ++L+I+ DLLP        T++  NEEP
Sbjct: 178 NVDLHERLYIDPDLLPLPELNTSQTKVSRNEEP 210