Miyakogusa Predicted Gene
- Lj0g3v0286519.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0286519.1 Non Chatacterized Hit- tr|G7JQJ9|G7JQJ9_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,56.32,2e-18,F-box domain,F-box domain, cyclin-like;
FBOX,F-box domain, cyclin-like; seg,NULL; no
description,NUL,gene.g22301.t1.1
(454 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80960.1 | Symbols: | F-box and Leucine Rich Repeat domains ... 69 6e-12
AT1G80960.2 | Symbols: | F-box and Leucine Rich Repeat domains ... 69 6e-12
AT1G67390.1 | Symbols: | F-box family protein | chr1:25244690-2... 67 2e-11
AT1G80960.3 | Symbols: | F-box and Leucine Rich Repeat domains ... 67 3e-11
AT3G60790.1 | Symbols: | F-box family protein | chr3:22464623-2... 65 7e-11
AT5G53840.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 49 7e-06
>AT1G80960.1 | Symbols: | F-box and Leucine Rich Repeat domains
containing protein | chr1:30416065-30418220 FORWARD
LENGTH=486
Length = 486
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 114/466 (24%), Positives = 192/466 (41%), Gaps = 70/466 (15%)
Query: 2 ISLLPDEILTYIISSLSVDEAVRTSILSKTWNPLWRNSSCLDFDGTRMIKRRN--VHAVR 59
IS LPD++L I+S LS +EA+RTS++SK W +W S L FD + I N +
Sbjct: 52 ISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVFDMRKNIINSNNTLDGSN 111
Query: 60 KYGELVSTVLNRHLCDLTMCRFRYLSPSLNAEELAALVKFL--VERNKNLISLTLECIKT 117
L++ V+N H L C ++ L + ++ L V+R K LTL
Sbjct: 112 PVATLITQVINNHRGHLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTK---VLTL----- 163
Query: 118 RPYFPSVMLNFKSGIFS-------NLCSLELNNYLMRRVNASAFEGCXXXXXXXXXXXIM 170
R ++ + FK+ FS +L SL L++Y + ++ C +
Sbjct: 164 RYHYGTWDRKFKTFNFSPDSLSHPSLMSLSLHSYFLE--SSHPLRNCSNLRTLKLLSIVA 221
Query: 171 EEQAV-NDVLENCSSLERFILVESTGFKK----LKIRNPSLNFLELRWLV-VNEIDVFVE 224
E V N VL +C LE +L FKK LKI N L L++ L ++ I+V
Sbjct: 222 PEIGVFNRVLASCPCLEVLVL-GICCFKKSRVPLKIENKKLKLLQVSSLERIDAIEVSTT 280
Query: 225 NLHEVVIDSILCPSKGLKIYIVDLRIFHS--TCNPIAQEIQAKYLGESIMKSQDILENCS 282
+L + I I C L + L+ + P I E + +++ +
Sbjct: 281 SLDILAIIDICCRRDDLSLQSPQLQFNRNFWVLGPYVPHISYNISEEKSIGNEEFVNTIY 340
Query: 283 GLFESQPINIFRNL---LTMSIDLDLN-------------YIREALALSFVLRSCHCLES 326
G + + F NL L++S+DL +N + R+ L L + + +
Sbjct: 341 G----ELLRPFANLYVALSVSVDL-MNPTEVERLRQVLGLWTRKILELEIIFKDNNGPRE 395
Query: 327 LDITIPVKKGSDTSDDGALPFPKSMFWERRNCVNHKLKFVTVRGFTGKELEGKFVEHLIA 386
+ + K D + PFP + F ++ V + F+G E E + LI
Sbjct: 396 ENKSWDKKLWEDNNKKD--PFPNAKF---------RVDTVWMYNFSGSEEEFALMTCLIR 444
Query: 387 RAVMVKKITIICNFSIVEEARKLLSQRRLSVYLSIILKSRRQIKLT 432
+ +V+K+ I + +++RL + ++ Q KLT
Sbjct: 445 QGTVVEKMMI--------KTSTFPARKRLKIEAAVAKLQALQTKLT 482
>AT1G80960.2 | Symbols: | F-box and Leucine Rich Repeat domains
containing protein | chr1:30416065-30418220 FORWARD
LENGTH=486
Length = 486
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 114/466 (24%), Positives = 192/466 (41%), Gaps = 70/466 (15%)
Query: 2 ISLLPDEILTYIISSLSVDEAVRTSILSKTWNPLWRNSSCLDFDGTRMIKRRN--VHAVR 59
IS LPD++L I+S LS +EA+RTS++SK W +W S L FD + I N +
Sbjct: 52 ISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVFDMRKNIINSNNTLDGSN 111
Query: 60 KYGELVSTVLNRHLCDLTMCRFRYLSPSLNAEELAALVKFL--VERNKNLISLTLECIKT 117
L++ V+N H L C ++ L + ++ L V+R K LTL
Sbjct: 112 PVATLITQVINNHRGHLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTK---VLTL----- 163
Query: 118 RPYFPSVMLNFKSGIFS-------NLCSLELNNYLMRRVNASAFEGCXXXXXXXXXXXIM 170
R ++ + FK+ FS +L SL L++Y + ++ C +
Sbjct: 164 RYHYGTWDRKFKTFNFSPDSLSHPSLMSLSLHSYFLE--SSHPLRNCSNLRTLKLLSIVA 221
Query: 171 EEQAV-NDVLENCSSLERFILVESTGFKK----LKIRNPSLNFLELRWLV-VNEIDVFVE 224
E V N VL +C LE +L FKK LKI N L L++ L ++ I+V
Sbjct: 222 PEIGVFNRVLASCPCLEVLVL-GICCFKKSRVPLKIENKKLKLLQVSSLERIDAIEVSTT 280
Query: 225 NLHEVVIDSILCPSKGLKIYIVDLRIFHS--TCNPIAQEIQAKYLGESIMKSQDILENCS 282
+L + I I C L + L+ + P I E + +++ +
Sbjct: 281 SLDILAIIDICCRRDDLSLQSPQLQFNRNFWVLGPYVPHISYNISEEKSIGNEEFVNTIY 340
Query: 283 GLFESQPINIFRNL---LTMSIDLDLN-------------YIREALALSFVLRSCHCLES 326
G + + F NL L++S+DL +N + R+ L L + + +
Sbjct: 341 G----ELLRPFANLYVALSVSVDL-MNPTEVERLRQVLGLWTRKILELEIIFKDNNGPRE 395
Query: 327 LDITIPVKKGSDTSDDGALPFPKSMFWERRNCVNHKLKFVTVRGFTGKELEGKFVEHLIA 386
+ + K D + PFP + F ++ V + F+G E E + LI
Sbjct: 396 ENKSWDKKLWEDNNKKD--PFPNAKF---------RVDTVWMYNFSGSEEEFALMTCLIR 444
Query: 387 RAVMVKKITIICNFSIVEEARKLLSQRRLSVYLSIILKSRRQIKLT 432
+ +V+K+ I + +++RL + ++ Q KLT
Sbjct: 445 QGTVVEKMMI--------KTSTFPARKRLKIEAAVAKLQALQTKLT 482
>AT1G67390.1 | Symbols: | F-box family protein |
chr1:25244690-25247139 FORWARD LENGTH=479
Length = 479
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 12/227 (5%)
Query: 2 ISLLPDEILTYIISSLSVDEAVRTSILSKTWNPLWRNSSCLDFDGTRMIKRRNVHAV--R 59
IS LPD++L I++SLS ++A++TS+LS W +W+ L FD + A
Sbjct: 43 ISKLPDDVLVMILASLSTEDALKTSVLSTRWKNVWKQVPYLHFDLLSATYESGLIAALSN 102
Query: 60 KYGELVSTVLNRHLCDLTMCRFRYLSPSLNAEELAALVKFL-VERNKNLISLTLECIKTR 118
E ++ V+N H L C + + L ++ L +E+N +SL + K R
Sbjct: 103 SVAESITQVINNHNGHLMGCSIHHFAHHCVNGVLENWIRLLTLEKNTRFLSLCNKLGKGR 162
Query: 119 PYFPSVMLNFKSGIFSN--LCSLELNNYLMRRVNASAFEGCXXXXXXXXXXXIMEEQAVN 176
+ +L F FS+ L +L L Y + V A AF+ C + E N
Sbjct: 163 ---RTNVLRFSPNTFSHPKLATLFLRRYDL--VTAHAFKECENLKILKLEGILAEVDVFN 217
Query: 177 DVLENCSSLERFILVESTGFKK--LKIRNPSLNFLELRWLVVNEIDV 221
V+ +C SL+ +L +K LKI N +L L L V+ IDV
Sbjct: 218 TVIASCPSLKVLVLNCMWYNEKTCLKIHNNNLKVLHLDCPHVDCIDV 264
>AT1G80960.3 | Symbols: | F-box and Leucine Rich Repeat domains
containing protein | chr1:30416065-30418220 FORWARD
LENGTH=462
Length = 462
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 108/450 (24%), Positives = 186/450 (41%), Gaps = 62/450 (13%)
Query: 2 ISLLPDEILTYIISSLSVDEAVRTSILSKTWNPLWRNSSCLDFDGTRMIKRRN--VHAVR 59
IS LPD++L I+S LS +EA+RTS++SK W +W S L FD + I N +
Sbjct: 52 ISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVFDMRKNIINSNNTLDGSN 111
Query: 60 KYGELVSTVLNRHLCDLTMCRFRYLSPSLNAEELAALVKFL--VERNKNLISLTLECIKT 117
L++ V+N H L C ++ L + ++ L V+R K LTL
Sbjct: 112 PVATLITQVINNHRGHLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTK---VLTL----- 163
Query: 118 RPYFPSVMLNFKSGIFS-------NLCSLELNNYLMRRVNASAFEGCXXXXXXXXXXXIM 170
R ++ + FK+ FS +L SL L++Y + ++ C +
Sbjct: 164 RYHYGTWDRKFKTFNFSPDSLSHPSLMSLSLHSYFLE--SSHPLRNCSNLRTLKLLSIVA 221
Query: 171 EEQAV-NDVLENCSSLERFILVESTGFKK----LKIRNPSLNFLELRWLV-VNEIDVFVE 224
E V N VL +C LE +L FKK LKI N L L++ L ++ I+V
Sbjct: 222 PEIGVFNRVLASCPCLEVLVL-GICCFKKSRVPLKIENKKLKLLQVSSLERIDAIEVSTT 280
Query: 225 NLHEVVIDSILCPSKGLKIYIVDLRIFHS--TCNPIAQEIQAKYLGESIMKSQDILENCS 282
+L + I I C L + L+ + P I E + +++ + +
Sbjct: 281 SLDILAIIDICCRRDDLSLQSPQLQFNRNFWVLGPYVPHISYNISEEKSIGNEEFV---N 337
Query: 283 GLFESQPINIFRNLLTMSIDLDLNYIREALALSFVLRSCHCLESLDITIPVKKGSDTSDD 342
++E + R +L + + R+ L L + + + + + K D +
Sbjct: 338 TIYE---VERLRQVLGL-------WTRKILELEIIFKDNNGPREENKSWDKKLWEDNNKK 387
Query: 343 GALPFPKSMFWERRNCVNHKLKFVTVRGFTGKELEGKFVEHLIARAVMVKKITIICNFSI 402
PFP + F ++ V + F+G E E + LI + +V+K+ I
Sbjct: 388 D--PFPNAKF---------RVDTVWMYNFSGSEEEFALMTCLIRQGTVVEKMMI------ 430
Query: 403 VEEARKLLSQRRLSVYLSIILKSRRQIKLT 432
+ +++RL + ++ Q KLT
Sbjct: 431 --KTSTFPARKRLKIEAAVAKLQALQTKLT 458
>AT3G60790.1 | Symbols: | F-box family protein |
chr3:22464623-22466948 FORWARD LENGTH=488
Length = 488
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 114/255 (44%), Gaps = 35/255 (13%)
Query: 2 ISLLPDEILTYIISSLSVDEAVRTSILSKTWNPLWRNSSCLDFDGTRMIKRRN----VHA 57
IS+LPDE+L I+S+LS +AV TS LSK W W+ L D R I R N VH
Sbjct: 52 ISMLPDEMLQKILSTLSTKDAVITSTLSKRWVDQWKRIPHLCVD-MRNIMRTNPTSYVHE 110
Query: 58 VR-KYGELVSTVLNRHLCDLTMCRFRYLSPSLNAEELAALVKFL------VERNKNLISL 110
+ ++ E ++ LN H L C ++ + F+ V R K +
Sbjct: 111 LSFRFAESMTKTLNNHRGHLESCTISHIQ---------FIFLFIDRWIQTVTREKQTKEI 161
Query: 111 TL----ECIKTRPYFPSVMLNFKSGIFSNLCSLELNNYLMRRVNASAFEGCXXXXXXXXX 166
TL C+ + S+ L+ + +L SL L Y ++ AF+ C
Sbjct: 162 TLVNNIGCMTPFVRYNSLHLSPSAFCHPSLTSLSLTRY---KLLEKAFKNCCNLKILKLY 218
Query: 167 XXIMEEQAVNDVLENCSSLERFILVESTGF----KKLKIRNPSLNFLELRW-LVVNEIDV 221
+ + +++V++ CSSLE +LV F LKI N L FL++ W ++N ++V
Sbjct: 219 DIMSDVSVLSNVIKACSSLE--VLVLQITFLNQASALKIENKKLEFLQVTWPCLMNRMEV 276
Query: 222 FVENLHEVVIDSILC 236
L I SI C
Sbjct: 277 NTPRLVIFDIKSIYC 291
>AT5G53840.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:21859148-21860672
REVERSE LENGTH=444
Length = 444
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 2 ISLLPDEILTYIISSLSVDEAVRTSILSKTWNPLWRNSSCLDFDGTRMIKRRNVHAVRKY 61
+S LPD ++ I+S LS +AVRTSILS W LW+ LDFD + R +
Sbjct: 20 LSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSREL---------RSF 70
Query: 62 GELVS 66
E VS
Sbjct: 71 SEFVS 75