Miyakogusa Predicted Gene

Lj0g3v0286379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286379.1 Non Chatacterized Hit- tr|I1Q9I8|I1Q9I8_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,37.74,0.0000000000005,FAMILY NOT NAMED,NULL; no
description,Nucleotide-binding, alpha-beta plait;
seg,NULL,CUFF.19101.1
         (197 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05970.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   167   3e-42
AT1G05970.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   164   4e-41

>AT1G05970.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:1816253-1816991 REVERSE LENGTH=200
          Length = 200

 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 120/194 (61%), Gaps = 2/194 (1%)

Query: 1   MGSSEE-EFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGP-SLP 58
           M + EE  +  F ++VRRTVY D L+P  T  V+ +A +QF TVK V FIPNYLGP  LP
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 59  QTALVELDSSKKVEDIVTMIGQYPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWL 118
              LVE+++ +  + +++ + Q PFM++GMPRPVRA  A   MF D+P  P R V +RW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 119 EPSDPDMEVAKQLKNLTRKHAAEIAHMHXXXXXXXXXXXXXXXXXLKMHHKKFKMIDGII 178
           +P+DPD + A+++K L RKH+AE + M                     HHKKF+M+D ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 179 TDTSAIRLARKYNL 192
            D  A +LA +Y+L
Sbjct: 181 YDGVAQKLAGRYDL 194


>AT1G05970.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:1816253-1816991 REVERSE LENGTH=198
          Length = 198

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 120/194 (61%), Gaps = 4/194 (2%)

Query: 1   MGSSEE-EFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGP-SLP 58
           M + EE  +  F ++VRRTVY D L+P  T  V+ +A +QF TVK V FIPNYLGP  LP
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 59  QTALVELDSSKKVEDIVTMIGQYPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWL 118
              LVE+++ +  + +++ + Q PFM++GMPRPVRA  A   MF D+P  P R V +RW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 119 EPSDPDMEVAKQLKNLTRKHAAEIAHMHXXXXXXXXXXXXXXXXXLKMHHKKFKMIDGII 178
           +P+DPD + A+++K L RKH+AE + M                     HHKKF+M+D ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKLEEAEKLSKQQAETAV--THHKKFEMMDKLL 178

Query: 179 TDTSAIRLARKYNL 192
            D  A +LA +Y+L
Sbjct: 179 YDGVAQKLAGRYDL 192