Miyakogusa Predicted Gene

Lj0g3v0286319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286319.1 Non Chatacterized Hit- tr|A9YWS8|A9YWS8_MEDTR
Putative uncharacterized protein (Fragment)
OS=Medicag,44.44,3e-19,Rhamnogal_lyase,Rhamnogalacturonate lyase;
PROKAR_LIPOPROTEIN,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY,CUFF.19102.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09910.1 | Symbols:  | Rhamnogalacturonate lyase family prote...    67   4e-12
AT1G09890.1 | Symbols:  | Rhamnogalacturonate lyase family prote...    62   9e-11
AT4G24430.1 | Symbols:  | Rhamnogalacturonate lyase family prote...    60   2e-10
AT2G22620.2 | Symbols:  | Rhamnogalacturonate lyase family prote...    58   1e-09
AT2G22620.1 | Symbols:  | Rhamnogalacturonate lyase family prote...    58   1e-09
AT4G37950.1 | Symbols:  | Rhamnogalacturonate lyase family prote...    52   1e-07
AT1G09880.1 | Symbols:  | Rhamnogalacturonate lyase family prote...    52   1e-07
AT4G38030.1 | Symbols:  | Rhamnogalacturonate lyase family prote...    52   1e-07

>AT1G09910.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr1:3220151-3224451 REVERSE LENGTH=675
          Length = 675

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 4/81 (4%)

Query: 30  CAEKTSLRRGLKDISSTKSTSIHS-GLNLNTDNHQQLVVDNGIVSVTLSRPEGYVIGISY 88
           C+E T   +G   +S  K   + S G++L+  + + +V+DNGI+ VTLS+P G + GI Y
Sbjct: 25  CSEGTD--QGTSGLSHRKDHRMSSHGVHLHVHD-RYVVMDNGILQVTLSKPGGIITGIEY 81

Query: 89  NEIDNILETENEEKDRGYFDV 109
           N IDN+LE  N+E +RGY+D+
Sbjct: 82  NGIDNVLEVRNKETNRGYWDL 102


>AT1G09890.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr1:3214237-3217386 REVERSE LENGTH=617
          Length = 617

 Score = 62.0 bits (149), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 67  VDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           +DNGI  VTLS+P+G V GI YN IDN+LE  NEE +RGY+D+
Sbjct: 1   MDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEEVNRGYWDL 43


>AT4G24430.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr4:12630018-12632975 FORWARD LENGTH=646
          Length = 646

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 37/46 (80%)

Query: 64  QLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
            +V+ NG V VT+S+P+G+V GISY  +DN+LET NE+ +RGY+D+
Sbjct: 15  HVVMGNGKVKVTISKPDGFVTGISYQGVDNLLETHNEDFNRGYWDL 60


>AT2G22620.2 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr2:9604902-9610156 REVERSE LENGTH=597
          Length = 597

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 2/48 (4%)

Query: 62  HQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           H  +VVDNGIV VT S PEG + GI Y+ IDN+L  +++  DRGY+DV
Sbjct: 59  HDTVVVDNGIVQVTFSNPEGLITGIKYHGIDNVL--DDKIDDRGYWDV 104


>AT2G22620.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr2:9604902-9610156 REVERSE LENGTH=677
          Length = 677

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 2/48 (4%)

Query: 62  HQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           H  +VVDNGIV VT S PEG + GI Y+ IDN+L  +++  DRGY+DV
Sbjct: 59  HDTVVVDNGIVQVTFSNPEGLITGIKYHGIDNVL--DDKIDDRGYWDV 104


>AT4G37950.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr4:17844792-17849156 FORWARD LENGTH=678
          Length = 678

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 23  LCFLLCSCAEKTSLRRGLKDISSTKSTSIHSGLNLNTDNHQQLVVDNGIVSVTLSRPEGY 82
           L FLL     +TS  R   +I+          + L      Q+VVDNGI+ VT S P+G 
Sbjct: 21  LVFLLQGVHSQTS--RNKFNIAKAGHKLASPPVTLKKVGDNQVVVDNGIIDVTFSSPQGL 78

Query: 83  VIGISYNEIDNILETENEEKDRGYFDV 109
           +  I YN ++N+L  + E  +RGY+DV
Sbjct: 79  ITRIKYNGLNNVLNDQIE--NRGYWDV 103


>AT1G09880.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr1:3208828-3211653 REVERSE LENGTH=631
          Length = 631

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 67  VDNGIVSVTLSRPEGYVIGISYNEIDNILE-TENEEKDRGYFDV 109
           ++N  + +TLS PEG+V GI YN IDN+L    N+E DRGY+DV
Sbjct: 1   MENRFLQLTLSNPEGFVTGIQYNGIDNVLAYYTNKEYDRGYWDV 44


>AT4G38030.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr4:17863206-17866730 REVERSE LENGTH=667
          Length = 667

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 63  QQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           ++++VDNGI+ V+ S P+G + GI Y  IDN+L      +DRGY+D+
Sbjct: 52  REVIVDNGIIRVSFSNPQGLITGIKYKGIDNVLHP--HLRDRGYWDI 96