Miyakogusa Predicted Gene

Lj0g3v0286159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286159.1 Non Chatacterized Hit- tr|I1L775|I1L775_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,58.33,0.000000000004,no description,Nucleotide-binding,
alpha-beta plait; coiled-coil,NULL; RNA-binding domain,
RBD,NULL;,CUFF.19089.1
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ...    57   1e-08
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like...    53   2e-07

>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
           chr1:18098186-18101422 FORWARD LENGTH=557
          Length = 557

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 180 PKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTD 227
           PKTP+T       KT++  NLS+++ERAD+E+ FK+ GEVVDV   T+
Sbjct: 285 PKTPST-PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTN 331


>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
           | chr3:6404270-6407822 REVERSE LENGTH=636
          Length = 636

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 180 PKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHT 226
           PKTPT  + +   KT++  NLSY + R+D+E+ FK+ GEVVDV L +
Sbjct: 372 PKTPTN-QTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSS 417