Miyakogusa Predicted Gene

Lj0g3v0285849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0285849.1 tr|A5X7X9|A5X7X9_PERAE MADS-box transcription
factor Pe.am.AGL6.2 (Fragment) OS=Persea americana PE=,48.51,4e-19,
,gene.g22234.t1.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45650.1 | Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804453-188...   117   2e-27
AT3G61120.1 | Symbols: AGL13 | AGAMOUS-like 13 | chr3:22618414-2...    69   5e-13

>AT2G45650.1 | Symbols: AGL6 | AGAMOUS-like 6 |
           chr2:18804453-18806291 FORWARD LENGTH=252
          Length = 252

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 7/108 (6%)

Query: 1   MIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLW--SSTSAAG---TSNFPFHP 55
           M+E+ME+LR +ER LGD+NKQLK+K E+EG+  K  ++LW  S+ S AG    S FP  P
Sbjct: 145 MMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGDPNNSEFPVEP 204

Query: 56  AQSNPMDCQPEPFLQIGY--HQYVQAESSSIPKNSMTCETNFMHGWML 101
           +  N +DC  EPFLQIG+  H YVQ E SS+ K+++  ETNF+ GW+L
Sbjct: 205 SHPNVLDCNTEPFLQIGFQQHYYVQGEGSSVSKSNVAGETNFVQGWVL 252


>AT3G61120.1 | Symbols: AGL13 | AGAMOUS-like 13 |
           chr3:22618414-22620466 REVERSE LENGTH=244
          Length = 244

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 8/103 (7%)

Query: 1   MIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSS--TSAAGTSNFPFHPAQS 58
           M+EQMEELR +ER LGD+N   KLKLE+E ++ K  ++L  +   +A  +++F       
Sbjct: 144 MMEQMEELRRKERELGDINN--KLKLETEDHDFKGFQDLLLNPVLTAGCSTDFSLQSTHQ 201

Query: 59  NPM-DCQPEPFLQIGYHQ-YVQAESSSIPKNSM--TCETNFMH 97
           N + DC    FLQIG+ Q Y Q E SS+ K++     ETNF+ 
Sbjct: 202 NYISDCNLGYFLQIGFQQHYEQGEGSSVTKSNARSDAETNFVQ 244