Miyakogusa Predicted Gene

Lj0g3v0285529.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0285529.1 Non Chatacterized Hit- tr|C5XRC0|C5XRC0_SORBI
Putative uncharacterized protein Sb03g041420
OS=Sorghu,45.13,1e-16,coiled-coil,NULL,CUFF.19050.1
         (327 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein BY...   328   3e-90
AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   320   1e-87

>AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein
           BYPASS related (InterPro:IPR008511); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in
           17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
           - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:7759337-7760415 REVERSE
           LENGTH=333
          Length = 333

 Score =  328 bits (841), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/342 (55%), Positives = 238/342 (69%), Gaps = 24/342 (7%)

Query: 1   MDPCPSSTNTNSVSGFYTFLTRGIEDLDRAFVSSTNNFTMSIQFLQRALSILRSFHTHLT 60
           MDP    +  NSV+GFY+FL R +EDL+R ++S  NNF MS+ FLQRAL +LR+ H+HLT
Sbjct: 1   MDP----SCANSVNGFYSFLNRSMEDLERVYLS--NNF-MSVHFLQRALCLLRTSHSHLT 53

Query: 61  LLVQKLHLPVGDKWLDEYMDETSKLWETCHVLKSGVSGIEGYYSAGLNITSSFDSHPHLT 120
           LLVQKL LPVGDKWLDEYMDE+SKLWE C V+KS VS +E + SAG++I S+ D    L+
Sbjct: 54  LLVQKLQLPVGDKWLDEYMDESSKLWEACLVIKSAVSSVENFSSAGISIASTLDR--RLS 111

Query: 121 PQLWRQVLRAISACRREAVGLEEENRSLMETRIHTLPLHFDER--VSMESKL---NGFNG 175
           PQL RQV+RAIS CRREA+G+EEENR+LME R+   P   ++    +MES     NGF+G
Sbjct: 112 PQLSRQVIRAISGCRREAIGIEEENRALMENRVQRFPFWSEQTSATAMESSTKLQNGFSG 171

Query: 176 FRGVLYAMRNISSMLLTILLQGLVYRCPDTPDMVLGGYEGGRLFLGSGLMVSAARLQQKV 235
           FRGVLYA RN+SS+LL +L+ GLVY  P                   G   +  RLQQ+V
Sbjct: 172 FRGVLYATRNMSSLLLMVLMNGLVYCFPGDAATQTQTQITQTQSQVGGFAGAMGRLQQRV 231

Query: 236 AAEIG--GAQPGMLLYEFRRSRVAVEELRGEL--------ERWGSQHVEWEMEVGLRERV 285
           AAE+G  G + G+L++E+RRS+ A+EEL+ EL           G +  E E E  LRERV
Sbjct: 232 AAEVGRMGIRKGILMHEYRRSKAALEELKAELERRFCGGGGGGGEREEEEEDERELRERV 291

Query: 286 ENLRMCFGVLKSGAESVVCQLDDFFDEIVEGRKKLLDFCSHR 327
           ENL+  FG L++G ES+V Q+DDFFDEIVEGRKKLLDFCSHR
Sbjct: 292 ENLKGYFGNLRNGTESIVAQIDDFFDEIVEGRKKLLDFCSHR 333


>AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G22030.1); Has 120 Blast hits to 120 proteins
           in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:29277244-29278388 REVERSE
           LENGTH=317
          Length = 317

 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/331 (55%), Positives = 242/331 (73%), Gaps = 32/331 (9%)

Query: 10  TNSVSGFYTFLTRGIEDLDRAFVSSTNNFTMSIQFLQRALSILRSFHTHLTLLVQKLHLP 69
           +NSV+GFY+FL R +EDL+R ++S  NNF MS+QFLQR + +LR+ H+HLTLLVQKL+LP
Sbjct: 6   SNSVNGFYSFLNRSMEDLERVYIS--NNF-MSLQFLQRVICLLRTSHSHLTLLVQKLNLP 62

Query: 70  VGDKWLDEYMDETSKLWETCHVLKSGVSGIEGYYSAGLNITSSFDSHPH----LTPQLWR 125
           VGDKWLD+YMDETSKLW+ CHV+KS +S IE + S+ ++ITS+ D H H    L+PQ+ R
Sbjct: 63  VGDKWLDDYMDETSKLWDVCHVIKSAISTIESFCSSAISITSTLDGHYHHRRLLSPQISR 122

Query: 126 QVLRAISACRREAVGLEEENRSLMETRIHTLPLHFDERVS---MESK--LNGFNGFRGVL 180
           QV+RAIS CRREAVG+EEENR+LME RI   P  + E+V+   MES    NGF+GFRGV+
Sbjct: 123 QVIRAISGCRREAVGIEEENRALMENRIQRFPF-WSEQVTTTGMESSKIQNGFSGFRGVM 181

Query: 181 YAMRNISSMLLTILLQGLVYRCPDTPDMVLGGYEGGRLFLGSGLMVSAARLQQKVAAEIG 240
             M+NI+S+LL IL+QGLVY  P            G   + +G M+   RL+Q+VAAE+ 
Sbjct: 182 NTMKNINSLLLVILMQGLVYYIP------------GDTTVPTGTMM---RLKQRVAAEME 226

Query: 241 --GAQPGMLLYEFRRSRVAVEELRGEL--ERWGSQHVEWEMEVGLRERVENLRMCFGVLK 296
             G + GM++YE+RRS+ A+EEL+ EL     G    E  +E GLRER+ENL+   G L+
Sbjct: 227 RIGVRKGMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAVEKGLRERIENLKGSVGSLR 286

Query: 297 SGAESVVCQLDDFFDEIVEGRKKLLDFCSHR 327
           +G ES+V Q+DDFFD+IV+GRK LLD+CSHR
Sbjct: 287 NGTESIVAQIDDFFDDIVDGRKMLLDYCSHR 317