Miyakogusa Predicted Gene

Lj0g3v0285439.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0285439.1 Non Chatacterized Hit- tr|I3T4U9|I3T4U9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.17,0,RIBOSOMAL_L34E,Ribosomal protein L34e, conserved site;
60S RIBOSOMAL PROTEIN L34,Ribosomal protein L,CUFF.19105.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26880.1 | Symbols:  | Ribosomal protein L34e superfamily pro...   183   2e-47
AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 | chr1:2618...   183   3e-47
AT3G28900.1 | Symbols:  | Ribosomal protein L34e superfamily pro...   176   3e-45
AT1G26880.2 | Symbols:  | Ribosomal protein L34e superfamily pro...   172   3e-44

>AT1G26880.1 | Symbols:  | Ribosomal protein L34e superfamily
          protein | chr1:9315640-9316681 REVERSE LENGTH=120
          Length = 120

 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 91/95 (95%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95


>AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 |
          chr1:26189900-26191081 FORWARD LENGTH=119
          Length = 119

 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 90/95 (94%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95


>AT3G28900.1 | Symbols:  | Ribosomal protein L34e superfamily
          protein | chr3:10902864-10904415 REVERSE LENGTH=120
          Length = 120

 Score =  176 bits (446), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 87/95 (91%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRL RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct: 61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95


>AT1G26880.2 | Symbols:  | Ribosomal protein L34e superfamily
          protein | chr1:9315798-9316681 REVERSE LENGTH=96
          Length = 96

 Score =  172 bits (437), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/92 (91%), Positives = 87/92 (94%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERII 92
          EYKRSRL RNRRTVNRAYGGVLSG AVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92