Miyakogusa Predicted Gene

Lj0g3v0285129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0285129.1 tr|A9SEV9|A9SEV9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233109,38.14,0.00000000000003,seg,NULL,CUFF.19022.1
         (649 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70620.3 | Symbols:  | cyclin-related | chr1:26626634-2663077...   134   2e-31
AT1G70620.2 | Symbols:  | cyclin-related | chr1:26626634-2663030...   133   4e-31
AT1G70620.1 | Symbols:  | cyclin-related | chr1:26626634-2663075...   131   2e-30

>AT1G70620.3 | Symbols:  | cyclin-related | chr1:26626634-26630777
           FORWARD LENGTH=957
          Length = 957

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 169/535 (31%), Positives = 252/535 (47%), Gaps = 66/535 (12%)

Query: 51  NNWGAPVAPGIGYPSITPILPSGPQHDPSVTNP---GHV--PYGRXXXXXXXXXXXXXXX 105
           N W      G+ YP I     S PQHD S+  P   GH+  PYGR               
Sbjct: 302 NAWQPHTTSGVVYPPIPSSAQSIPQHDSSMAIPPVSGHIMPPYGRFPPPNPQPVGPPYAF 361

Query: 106 XXXGTAIHHSAAFSADAYGISGVPERPKKASVPNWLRDEI--KKTVIAAPSVDHPKEEAT 163
                 +H  AAF  D+Y  S VP  PKKA VPNWL++E+  KK  +  PS    +E  +
Sbjct: 362 GTK-PPLHPVAAFMDDSYAASSVP--PKKAPVPNWLKEELLKKKADLGRPSSGRFEERES 418

Query: 164 FVDDGIDKSYVKGDEADSKSIDSSRSAXXXXXXXXHGEAARTAAINQEIKKVLTEVLLKV 223
             DD + K   K D+ D KS   S S+          +AART  IN EIK++LTEVLLKV
Sbjct: 419 MDDDVLYKPPTKADQPDKKSFSPSNSSDEEEEDEM--DAARTTEINMEIKRILTEVLLKV 476

Query: 224 TDELFDEIATRVVSEDDQIAE---VGHNIXXXXXXXXXXXXXXXXXXXXXXVLVPVKAKE 280
           TDELFDEIAT+V++ED+ I +   V HN                       +LV V+   
Sbjct: 477 TDELFDEIATKVINEDEAIPKDDSVQHN---HKLSSSLLSTADPLHKASAKILVSVE--- 530

Query: 281 IENGGANEKSNSSFPGDVLGLGNYGSDADDEDDEIKNSSVPTPAKEAANMVNNLVKPSSL 340
               GAN K++S  P DVLGL +Y SD DD D +         A   AN   N V+   +
Sbjct: 531 ----GANTKASSGSPADVLGLASYASDDDDADTD---------AASDANADENGVESLGV 577

Query: 341 PSRN--SNGAAIDQVHDDKVI--EKFDNASKVASKDNRDNELNAIESSHARLNGFSSKDT 396
            SR+  S   + +++ D + +   K D A  V +   + N  + +E  ++++ G + KD 
Sbjct: 578 GSRHNVSQQPSTEKLPDPEAMASAKLDPAVGVNANSGK-NSKSGLE-DYSQMPGSTRKDD 635

Query: 397 PGMPRSELSGKNVGAEKAVDDHTGRGSRKKNRLDRNSSEKDFIKEEQG------------ 444
                +++S  +V A   +DD T  GSRK++  DR  S+KD I +E              
Sbjct: 636 EAG-STKIS--DVSASSGLDDDTS-GSRKEHP-DRTDSDKDAILDEPHVKNSGVKSDCNL 690

Query: 445 --------GNTRTDEKGNDSRRRKDERHQKKDQTDYGSEAKEKLKEHNIRHGEKAXXXXX 496
                   G   +DE   D R R  E    K++ D  +++K+++KE++++  EK      
Sbjct: 691 RQDSNKPYGKDLSDEVSTD-RSRIVETKGGKEKGDSQNDSKDRMKENDLKSAEKVKGVES 749

Query: 497 XXXXXHVDTKDDRKETEKSSRGRNTEDNSRRKDHAKDKEENKSRQKDASNPDRHK 551
                    K D ++ E+  R  + ED  +RK+  K++E ++ R+ + S+ D+ +
Sbjct: 750 NKKSTDPHVKKDSRDVERPHRTNSKEDRGKRKEKEKEEERSRHRRAENSSKDKRR 804


>AT1G70620.2 | Symbols:  | cyclin-related | chr1:26626634-26630307
           FORWARD LENGTH=884
          Length = 884

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 164/509 (32%), Positives = 236/509 (46%), Gaps = 70/509 (13%)

Query: 51  NNWGAPVAPGIGYPSITPILPSGPQHDPSVTNP---GHV--PYGRXXXXXXXXXXXXXXX 105
           N W      G+ YP I     S PQHD S+  P   GH+  PYGR               
Sbjct: 315 NAWQPHTTSGVVYPPIPSSAQSIPQHDSSMAIPPVSGHIMPPYGRFPPPNPQPVGPPYAF 374

Query: 106 XXXGT--AIHHSAAFSADAYGISGVPERPKKASVPNWLRDEI--KKTVIAAPSVDHPKEE 161
              GT   +H  AAF  D+Y  S VP  PKKA VPNWL++E+  KK  +  PS    +E 
Sbjct: 375 ---GTKPPLHPVAAFMDDSYAASSVP--PKKAPVPNWLKEELLKKKADLGRPSSGRFEER 429

Query: 162 ATFVDDGIDKSYVKGDEADSKSIDSSRSAXXXXXXXXHGEAARTAAINQEIKKVLTEVLL 221
            +  DD + K   K D+ D KS   S S+          +AART  IN EIK++LTEVLL
Sbjct: 430 ESMDDDVLYKPPTKADQPDKKSFSPSNSSDEEEEDEM--DAARTTEINMEIKRILTEVLL 487

Query: 222 KVTDELFDEIATRVVSEDDQIAE---VGHNIXXXXXXXXXXXXXXXXXXXXXXVLVPVKA 278
           KVTDELFDEIAT+V++ED+ I +   V HN                       +LV V+ 
Sbjct: 488 KVTDELFDEIATKVINEDEAIPKDDSVQHN---HKLSSSLLSTADPLHKASAKILVSVE- 543

Query: 279 KEIENGGANEKSNSSFPGDVLGLGNYGSDADDEDDEIKNSSVPTPAKEAANMVNNLVKPS 338
                 GAN K++S  P DVLGL +Y SD DD D +         A   AN   N V+  
Sbjct: 544 ------GANTKASSGSPADVLGLASYASDDDDADTD---------AASDANADENGVESL 588

Query: 339 SLPSRN--SNGAAIDQVHDDKVI--EKFDNASKVASKDNRDNELNAIESSHARLNGFSSK 394
            + SR+  S   + +++ D + +   K D A  V +   + N  + +E  ++++ G + K
Sbjct: 589 GVGSRHNVSQQPSTEKLPDPEAMASAKLDPAVGVNANSGK-NSKSGLE-DYSQMPGSTRK 646

Query: 395 DTPGMPRSELSGKNVGAEKAVDDHTGRGSRKKNRLDRNSSEKDFIKEEQG---------- 444
           D      +++S  +V A   +DD T  GSRK++  DR  S+KD I +E            
Sbjct: 647 DDEAG-STKIS--DVSASSGLDDDTS-GSRKEHP-DRTDSDKDAILDEPHVKNSGVKSDC 701

Query: 445 ----------GNTRTDEKGNDSRRRKDERHQKKDQTDYGSEAKEKLKEHNIRHGEKAXXX 494
                     G   +DE   D R R  E    K++ D  +++K+++KE++++  EK    
Sbjct: 702 NLRQDSNKPYGKDLSDEVSTD-RSRIVETKGGKEKGDSQNDSKDRMKENDLKSAEKVKGV 760

Query: 495 XXXXXXXHVDTKDDRKETEKSSRGRNTED 523
                      K D ++ E+  R  + ED
Sbjct: 761 ESNKKSTDPHVKKDSRDVERPHRTNSKED 789


>AT1G70620.1 | Symbols:  | cyclin-related | chr1:26626634-26630755
           FORWARD LENGTH=897
          Length = 897

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 159/506 (31%), Positives = 233/506 (46%), Gaps = 81/506 (16%)

Query: 51  NNWGAPVAPGIGYPSITPILPSGPQHDPSVTNP---GHV--PYGRXXXXXXXXXXXXXXX 105
           N W      G+ YP I     S PQHD S+  P   GH+  PYGR               
Sbjct: 302 NAWQPHTTSGVVYPPIPSSAQSIPQHDSSMAIPPVSGHIMPPYGRFPPPNPQPVGPPYAF 361

Query: 106 XXXGT--AIHHSAAFSADAYGISGVPERPKKASVPNWLRDEI--KKTVIAAPSVDHPKEE 161
              GT   +H  AAF  D+Y  S VP  PKKA VPNWL++E+  KK  +  PS    +E 
Sbjct: 362 ---GTKPPLHPVAAFMDDSYAASSVP--PKKAPVPNWLKEELLKKKADLGRPSSGRFEER 416

Query: 162 ATFVDDGIDKSYVKGDEADSKSIDSSRSAXXXXXXXXHGEAARTAAINQEIKKVLTEVLL 221
            +  DD + K   K D+ D KS   S S+          +AART  IN EIK++LTEVLL
Sbjct: 417 ESMDDDVLYKPPTKADQPDKKSFSPSNSSDEEEEDEM--DAARTTEINMEIKRILTEVLL 474

Query: 222 KVTDELFDEIATRVVSEDDQIAEVGHNIXXXXXXXXXXXXXXXXXXXXXXVLVPVKAKEI 281
           KVTDELFDEIAT+V++ED+ I +                           +LV V+    
Sbjct: 475 KVTDELFDEIATKVINEDEAIPKA-----------------DPLHKASAKILVSVE---- 513

Query: 282 ENGGANEKSNSSFPGDVLGLGNYGSDADDEDDEIKNSSVPTPAKEAANMVNNLVKPSSLP 341
              GAN K++S  P DVLGL +Y SD DD D +  + +         N V +L     + 
Sbjct: 514 ---GANTKASSGSPADVLGLASYASDDDDADTDAASDA-----NADENGVESL----GVG 561

Query: 342 SRN--SNGAAIDQVHDDKVI--EKFDNASKVASKDNRDNELNAIESSHARLNGFSSKDTP 397
           SR+  S   + +++ D + +   K D A  V +   + N  + +E  ++++ G + KD  
Sbjct: 562 SRHNVSQQPSTEKLPDPEAMASAKLDPAVGVNANSGK-NSKSGLE-DYSQMPGSTRKDDE 619

Query: 398 GMPRSELSGKNVGAEKAVDDHTGRGSRKKNRLDRNSSEKDFIKEEQG------------- 444
               +++S  +V A   +DD T  GSRK++  DR  S+KD I +E               
Sbjct: 620 AG-STKIS--DVSASSGLDDDTS-GSRKEH-PDRTDSDKDAILDEPHVKNSGVKSDCNLR 674

Query: 445 -------GNTRTDEKGNDSRRRKDERHQKKDQTDYGSEAKEKLKEHNIRHGEKAXXXXXX 497
                  G   +DE   D R R  E    K++ D  +++K+++KE++++  EK       
Sbjct: 675 QDSNKPYGKDLSDEVSTD-RSRIVETKGGKEKGDSQNDSKDRMKENDLKSAEKVKGVESN 733

Query: 498 XXXXHVDTKDDRKETEKSSRGRNTED 523
                   K D ++ E+  R  + ED
Sbjct: 734 KKSTDPHVKKDSRDVERPHRTNSKED 759