Miyakogusa Predicted Gene

Lj0g3v0284819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284819.1 Non Chatacterized Hit- tr|I1K0B7|I1K0B7_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,86.94,0,Cytidine
deaminase-like,Cytidine deaminase-like; CYT_DCMP_DEAMINASES,APOBEC/CMP
deaminase, zinc-bind,CUFF.18991.1
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48540.1 | Symbols:  | Cytidine/deoxycytidylate deaminase fam...   331   3e-91

>AT3G48540.1 | Symbols:  | Cytidine/deoxycytidylate deaminase family
           protein | chr3:17989798-17992015 REVERSE LENGTH=232
          Length = 232

 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/226 (70%), Positives = 179/226 (79%), Gaps = 4/226 (1%)

Query: 1   MNSREXXXXXXXXXXXXXXXXXXXRFFFNRSRRQPSR----TNFSQNGTVSTPPDPFDPS 56
           MNSR+                   RFF +  +   SR    T  S         DPF P 
Sbjct: 1   MNSRDLTLVSTSAIFGALISALAFRFFSSNPKNPKSRKFTSTEISAISRKFPALDPFSPL 60

Query: 57  RRHGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 116
           +R+GYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQ+G+ILGIGYNGFPRGCSDDKLPW
Sbjct: 61  KRNGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPW 120

Query: 117 AKKSRTGNPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 176
           AKKSRTG+PLETKYPYVCHAEVNAILNTNHASAAGQ+LYVTMFPCNECAKII+QSGV+EV
Sbjct: 121 AKKSRTGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIILQSGVAEV 180

Query: 177 IYFVEKRLDNPDIAYIASHKLLSLAGVKVRKHQPLMNEIHLKFDEH 222
           IYFVEKR ++ D+AY+ASHKLLS+A VKVRKHQP M+EI +KF+EH
Sbjct: 181 IYFVEKRPNDSDVAYVASHKLLSMANVKVRKHQPEMDEILIKFEEH 226