Miyakogusa Predicted Gene

Lj0g3v0284469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284469.1 Non Chatacterized Hit- tr|I1M729|I1M729_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50354
PE,22.42,7e-17,seg,NULL; FMN-binding split barrel,FMN-binding split
barrel-related,CUFF.18973.1
         (490 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24060.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   388   e-108
AT5G24060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   385   e-107
AT3G49140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   369   e-102
AT3G59300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   129   7e-30

>AT5G24060.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:8130273-8133269 REVERSE
           LENGTH=494
          Length = 494

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/511 (44%), Positives = 292/511 (57%), Gaps = 61/511 (11%)

Query: 3   STEEVNGGVGYVASCRL--------ACSCGFDAPWLRSKKYTSTPLTRRNKLVKNKIRAS 54
           +TE+  G   +VA  R         +  CGF        K  S  +TR+  L +N+ +A 
Sbjct: 20  NTEDGGGSFFHVAPRRTFRPHLLNTSSGCGF-------LKCYSDYITRK-YLRRNRTQAI 71

Query: 55  SEHPGSAQNKNE---KASYHPSEDIAASTSE-NSGDARLTAAETSRTIIEVNSKATLMFS 110
           +E+ GSA +  +   K+SYHPSEDI A   E N GD+RL+  ET+RTIIEVN K TLM S
Sbjct: 72  AEYLGSASDPKKPTGKSSYHPSEDIRAYVPEKNPGDSRLSPPETARTIIEVNKKGTLMLS 131

Query: 111 SIISDEFHENIVWPDMPYLTDEHGNIYFQVKNSEDVLQSL-TSENNFVQVIVGVDTMEMI 169
            ++    HENI+WPD+PY+TD+HGNIYFQVK +ED++Q++ TS+NN+VQVIVG DTMEMI
Sbjct: 132 GLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDTMEMI 191

Query: 170 SEMDLSGPSEIDFGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVAVLX--- 226
            +M+LS PS I FGI                                    WVAVL    
Sbjct: 192 KDMELSSPSGIGFGIEEIEDGESEVEDENKGDEDEGEDKDDEE--------WVAVLEDGD 243

Query: 227 -XXXXXXXXXXXLADWAKLETMRFSHPMHFANKLAEVASDDPIDWMEQPPACVAIQGIIR 285
                       L DWA LETMR+ HPM+FA ++AEVAS DP++WM+QP A +AIQG++ 
Sbjct: 244 DEDNYVSDSDESLGDWANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSAGLAIQGLLS 303

Query: 286 PAFVEDHSTIQNHISA-------KQXXXXXXXXXXXXXGENVSAINGHVDNSVSSRDNPG 338
           P  VEDHS IQ HIS        K              GEN S I               
Sbjct: 304 PVIVEDHSDIQKHISGCISTGTDKNKERENSEEIFEGIGENESEI--------------- 348

Query: 339 QQLENNRNSDIPFNETSFYRLEMIKIQVFSAQGDPTILELEDYMKAQPDXXXXXXXXXXX 398
             +EN+RN+        +Y+LE+I+IQ+ +AQG  T +E+ED  KAQPD           
Sbjct: 349 LHVENSRNA------IQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVIACASDGILT 402

Query: 399 RLKAGGEKTLQALKSLCWRCKGVQVEEAKLICVDSLGFDLRVCSGTQIQTLRITFKKRAT 458
           RL+  G+K  +AL+SLCWR  G+Q EE KLI +DSLGFDLR+CSG QI+TLR  F  RAT
Sbjct: 403 RLEEDGDKLTEALRSLCWRNNGIQAEEVKLIGIDSLGFDLRICSGMQIETLRFAFSIRAT 462

Query: 459 SEYSAERQLNDLLFPRTHPKHQKSKQAHQNE 489
           SE++AE QL +LLF  T  K QK KQ +Q E
Sbjct: 463 SEHNAEGQLRELLFASTPSKPQKPKQTNQKE 493


>AT5G24060.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:8130273-8133269 REVERSE
           LENGTH=481
          Length = 481

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/460 (46%), Positives = 273/460 (59%), Gaps = 45/460 (9%)

Query: 46  LVKNKIRASSEHPGSAQNKNE---KASYHPSEDIAASTSE-NSGDARLTAAETSRTIIEV 101
           L +N+ +A +E+ GSA +  +   K+SYHPSEDI A   E N GD+RL+  ET+RTIIEV
Sbjct: 50  LRRNRTQAIAEYLGSASDPKKPTGKSSYHPSEDIRAYVPEKNPGDSRLSPPETARTIIEV 109

Query: 102 NSKATLMFSSIISDEFHENIVWPDMPYLTDEHGNIYFQVKNSEDVLQSL-TSENNFVQVI 160
           N K TLM S ++    HENI+WPD+PY+TD+HGNIYFQVK +ED++Q++ TS+NN+VQVI
Sbjct: 110 NKKGTLMLSGLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVI 169

Query: 161 VGVDTMEMISEMDLSGPSEIDFGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 220
           VG DTMEMI +M+LS PS I FGI                                    
Sbjct: 170 VGFDTMEMIKDMELSSPSGIGFGIEEIEDGESEVEDENKGDEDEGEDKDDEE-------- 221

Query: 221 WVAVLX----XXXXXXXXXXXLADWAKLETMRFSHPMHFANKLAEVASDDPIDWMEQPPA 276
           WVAVL                L DWA LETMR+ HPM+FA ++AEVAS DP++WM+QP A
Sbjct: 222 WVAVLEDGDDEDNYVSDSDESLGDWANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSA 281

Query: 277 CVAIQGIIRPAFVEDHSTIQNHISA-------KQXXXXXXXXXXXXXGENVSAINGHVDN 329
            +AIQG++ P  VEDHS IQ HIS        K              GEN S I      
Sbjct: 282 GLAIQGLLSPVIVEDHSDIQKHISGCISTGTDKNKERENSEEIFEGIGENESEI------ 335

Query: 330 SVSSRDNPGQQLENNRNSDIPFNETSFYRLEMIKIQVFSAQGDPTILELEDYMKAQPDXX 389
                      +EN+RN+        +Y+LE+I+IQ+ +AQG  T +E+ED  KAQPD  
Sbjct: 336 ---------LHVENSRNA------IQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVI 380

Query: 390 XXXXXXXXXRLKAGGEKTLQALKSLCWRCKGVQVEEAKLICVDSLGFDLRVCSGTQIQTL 449
                    RL+  G+K  +AL+SLCWR  G+Q EE KLI +DSLGFDLR+CSG QI+TL
Sbjct: 381 ACASDGILTRLEEDGDKLTEALRSLCWRNNGIQAEEVKLIGIDSLGFDLRICSGMQIETL 440

Query: 450 RITFKKRATSEYSAERQLNDLLFPRTHPKHQKSKQAHQNE 489
           R  F  RATSE++AE QL +LLF  T  K QK KQ +Q E
Sbjct: 441 RFAFSIRATSEHNAEGQLRELLFASTPSKPQKPKQTNQKE 480


>AT3G49140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18212187-18215557 REVERSE
           LENGTH=499
          Length = 499

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/466 (44%), Positives = 272/466 (58%), Gaps = 48/466 (10%)

Query: 34  KYTSTPLTRRNKLVKNKIRASSEHPGSA---QNKNEKASYHPSEDIAASTSENSGDARLT 90
           KY S  +TR++ L KN+ +A++E+  SA   + +  K+ YHPSE+I AS  +N GD+RL+
Sbjct: 59  KYNSDYITRKH-LRKNRTQATAEYVDSASDPEKQTGKSRYHPSEEIRASLPQNDGDSRLS 117

Query: 91  AAETSRTIIEVNSKATLMFSSIISDEFHENIVWPDMPYLTDEHGNIYFQVKNSEDVLQSL 150
            AET+RTIIEVN+K TLM +  I D  HENI+WPD+PY+TD++GN+YFQVK  EDV+QS+
Sbjct: 118 PAETTRTIIEVNNKGTLMLTGSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSV 177

Query: 151 TSENNFVQVIVGVDTMEMISEMDLSGPSEIDFGIXXXXXXXXXXXXXXXXXXXXXXXXXX 210
           TSENN+VQVIVG DTMEMI EM+L G S+ DF                            
Sbjct: 178 TSENNYVQVIVGFDTMEMIKEMELMGLSDSDF---------------ETEDDESGDDDSE 222

Query: 211 XXXXXXXXXXWVAVLXXXXXXXXXXXX-------------LADWAKLETMRFSHPMHFAN 257
                     WVA+L                         L DWA LETMR  HPM FA 
Sbjct: 223 DTGEDEDEEEWVAILEDEDEDDDDDDDDDEDDDDSDSDESLGDWANLETMRSCHPMFFAK 282

Query: 258 KLAEVASDDPIDWMEQPPACVAIQGIIRPAFVEDHSTIQNHISAKQXXXXXXXXXXXXXG 317
           ++ EVAS+DP+DWM+QP A +AIQG++    VED+S IQ     K+              
Sbjct: 283 RMTEVASNDPVDWMDQPSAGLAIQGLLSHILVEDYSDIQ-----KKLADSNSTTNGNKDA 337

Query: 318 ENVSAINGHVDNSVSSRDNP---GQQLENNRNSDIPFNETSFYRLEMIKIQVFSAQGDPT 374
           EN+  ++   DNS +  D       Q E  RN        +FY+LEMI+IQ+ +AQGD T
Sbjct: 338 ENL--VDKLEDNSKAGGDESEIDSSQDEKARNV------VAFYKLEMIRIQLITAQGDQT 389

Query: 375 ILELEDYMKAQPDXXXXXXXXXXXRLKAGGEKTLQALKSLCWRCKGVQVEEAKLICVDSL 434
            +E+ED  KAQPD           RL+  G+K  +ALKSLCWR   +Q EE KLI +DSL
Sbjct: 390 EVEVEDVRKAQPDAIAHASAEIISRLEESGDKITEALKSLCWRHNSIQAEEVKLIGIDSL 449

Query: 435 GFDLRVCSGTQIQTLRITFKKRATSEYSAERQLNDLLFPRTHPKHQ 480
           GFDLR+C+G +I++LR  F  RATSE +AE Q+  LLFP+T+   Q
Sbjct: 450 GFDLRLCAGAKIESLRFAFSTRATSEENAEGQIRKLLFPKTNQSTQ 495


>AT3G59300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:21918667-21921877 FORWARD
           LENGTH=459
          Length = 459

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 120/242 (49%), Gaps = 25/242 (10%)

Query: 240 DWAKLETMRFSHPMHFANKLAEVASDDPIDWMEQPPACVAIQGIIRPAFVEDHSTIQNHI 299
           DW   +T    HP++FA  L++  S D    M+ P   V+I G +RPAF+++ S I+   
Sbjct: 232 DWGMPDTSNGVHPIYFAKHLSKAISMDYDRKMDYPSNGVSILGCLRPAFLDEESYIRRLF 291

Query: 300 SAKQXXXXXXXXXXXXXGENVSAINGHVDNSVSSRDNPGQQLENNRNSDIPFNETSFYRL 359
            ++                            V   DNP      + N       +S YRL
Sbjct: 292 LSEDRDDYSW--------------------EVQGDDNPITSSRRDEND----MSSSLYRL 327

Query: 360 EMIKIQVFSAQGDPTILELEDYMKAQPDXXXXXXXXXXXRLKAGGEKTLQALKSLCWRCK 419
           E++ I++ S  G  + + L+D+  A+PD           R    G  +  ALK+LC + K
Sbjct: 328 EIVGIELLSLYGAESSISLQDFQDAEPDILVHSTSAIIERFNNRGINSSIALKALCKK-K 386

Query: 420 GVQVEEAKLICVDSLGFDLRVCSGTQIQTLRITFKKRATSEYSAERQLNDLLFPRTHPKH 479
           G+  EEA LI VDSLG D+RV +G Q+QT R  FK RAT+E +AE++++ LLFPR+  + 
Sbjct: 387 GLHAEEANLISVDSLGMDVRVFAGAQVQTHRFPFKTRATTEMAAEKKIHQLLFPRSRRRK 446

Query: 480 QK 481
            K
Sbjct: 447 LK 448



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 70  YHPSEDIAASTSENSGDARLTAAETSRTIIEVNSKATLMFSSIISDEFHENIVWPDMPYL 129
           YHP ED+    S+   + +L+A+E +RT +E NS A L+F   I  E H++  W +  Y+
Sbjct: 97  YHPLEDL--KPSKRVQETKLSASEVARTTVEANSSAVLVFPGAIHCEPHDHNSWSEFKYV 154

Query: 130 TDEHGNIYFQVKNSEDVLQSLTSENNFVQVIVGVDT 165
            D++G+I+F++ + E++L+   + N  V+   G+D 
Sbjct: 155 IDDYGDIFFEIPDDENILEDPGASNP-VKAFFGMDV 189