Miyakogusa Predicted Gene

Lj0g3v0284279.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284279.2 Non Chatacterized Hit- tr|I1MAP2|I1MAP2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3608
PE=,91.16,0,Atg14,UV radiation resistance protein/autophagy-related
protein 14; seg,NULL; coiled-coil,NULL; SUBF,CUFF.18969.2
         (475 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08540.1 | Symbols:  | DNA-directed RNA polymerase II protein...   645   0.0  
AT1G77890.1 | Symbols:  | DNA-directed RNA polymerase II protein...   374   e-104
AT1G77890.3 | Symbols:  | DNA-directed RNA polymerase II protein...   369   e-102
AT1G77890.2 | Symbols:  | DNA-directed RNA polymerase II protein...   350   1e-96

>AT4G08540.1 | Symbols:  | DNA-directed RNA polymerase II protein |
           chr4:5433760-5436326 FORWARD LENGTH=473
          Length = 473

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/476 (68%), Positives = 390/476 (81%), Gaps = 4/476 (0%)

Query: 1   MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGD 60
           M +++SNCAIC+N+N+  IC+ CVN+RL EY T LKSLK RRDSL ++ +E+L  KGK D
Sbjct: 1   MTKRSSNCAICDNTNRPCICTACVNHRLIEYNTLLKSLKTRRDSLLSRFNELLESKGKAD 60

Query: 61  DQTNWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRV 120
           DQ NWR++Q+EK+++LK+KL+ +KE V QG+ KI   S+DLK+KYGVL+SA STLEK RV
Sbjct: 61  DQKNWRLIQNEKISKLKKKLKSNKELVTQGKVKIERGSSDLKVKYGVLDSARSTLEKTRV 120

Query: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYD 180
           EQ+EK++PNLICTQSLGH+AI+SERLHKQSVV+KQICKLFP RRV  +GE+++G   QYD
Sbjct: 121 EQVEKYFPNLICTQSLGHMAISSERLHKQSVVVKQICKLFPLRRVSFDGESQNGSVRQYD 180

Query: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD 240
            ICN+RLP  LDPHS+PSEEL+ SLGYMVQLLNLV+HNLAAPALH+SGFAGSCSRIWQRD
Sbjct: 181 VICNSRLPSGLDPHSIPSEELAVSLGYMVQLLNLVVHNLAAPALHSSGFAGSCSRIWQRD 240

Query: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRR-PRLDXXXXX 299
           SYWD R S+RSNEYPLFIPR+NYCSTS ENSW+DK+SSNFGVASMESDR+ PRLD     
Sbjct: 241 SYWDGRTSTRSNEYPLFIPRRNYCSTSVENSWTDKNSSNFGVASMESDRKEPRLDSPGSN 300

Query: 300 XXXXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLAT 359
                      +++H+DLQKGI+LLKKSVAC+T+YCYNSLCL+VP EASTFEAFAKLLAT
Sbjct: 301 SFKYSSASPHSIESHRDLQKGIALLKKSVACLTAYCYNSLCLEVPPEASTFEAFAKLLAT 360

Query: 360 LSSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMDSTISSTTLLESAHSVPPMRIENYMP 419
           LSSSKEVRSVFSLKMA SR+ KQ QQLNKS+WN  S ISS +LLESAH +P     N  P
Sbjct: 361 LSSSKEVRSVFSLKMASSRSGKQAQQLNKSIWNAHSVISS-SLLESAH-LPRNTSYNQDP 418

Query: 420 SSGTSFLYATDLSDGKSECLFEGWDIVERXXXXXXXSQSEDVEHWTRAMFIDAKRK 475
           +S  S+L AT+LS  K+  +  GWD+VE        SQSEDVEHWTRAMFIDAK+K
Sbjct: 419 NSPASYLSATELSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTRAMFIDAKKK 473


>AT1G77890.1 | Symbols:  | DNA-directed RNA polymerase II protein |
           chr1:29292497-29295440 FORWARD LENGTH=460
          Length = 460

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/390 (51%), Positives = 267/390 (68%), Gaps = 4/390 (1%)

Query: 4   KTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGDDQT 63
           K++ CA+C  S + SIC  CVN  LNEY   L SLK  R+    +LS +LV K K   Q 
Sbjct: 3   KSTKCAVCYKSFRPSICVDCVNRGLNEYKVKLDSLKSLREVSYFRLSGLLVTKEKAISQR 62

Query: 64  NWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRVEQL 123
            W+ LQ+EKLA+L+EKL+   E++ Q +    ++S +LK +YG++ES    LE++RV QL
Sbjct: 63  CWKELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERYGIIESTNVALEESRVHQL 122

Query: 124 EKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYDQIC 183
           E  Y + I    L ++ +TSERL+KQ++V+KQICKLFP  RV +EG+ KDG S QYDQIC
Sbjct: 123 ENHYSDTIGNHYLVYIDLTSERLYKQALVMKQICKLFPLSRVTVEGQNKDGSSVQYDQIC 182

Query: 184 NARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRDSYW 243
           NA LP+ L+P SVP +EL+ASLGYMVQLLNLV+H L+ PALHN GFAGSCSRIW+RDSYW
Sbjct: 183 NALLPQGLNPLSVPPKELAASLGYMVQLLNLVVHKLSVPALHNLGFAGSCSRIWERDSYW 242

Query: 244 DARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXX--XXXXX 301
           ++ PSS SN YPLF+P  ++ S   ++SW+ + ++NFGV S++SD     D         
Sbjct: 243 NSYPSSPSNGYPLFVPIHDHYSFEEKSSWTGRDTTNFGVTSLKSDGSIEEDYHDLDLDVV 302

Query: 302 XXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATLS 361
                    V+T ++LQ+GI+ LK+SVA +T Y Y SL L+VPS  STFE FAKLLATLS
Sbjct: 303 SLSSASPHSVETFRNLQQGIAHLKQSVAHLTVYGYRSLSLEVPSGTSTFETFAKLLATLS 362

Query: 362 SSKEVRSVFSLKMARSRTCKQVQQLNKSVW 391
           S KEV+S  SL ++ S   KQ  + NKSVW
Sbjct: 363 SLKEVQSGLSLGLSSSN--KQRHEPNKSVW 390


>AT1G77890.3 | Symbols:  | DNA-directed RNA polymerase II protein |
           chr1:29292497-29295440 FORWARD LENGTH=458
          Length = 458

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/390 (51%), Positives = 266/390 (68%), Gaps = 6/390 (1%)

Query: 4   KTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGDDQT 63
           K++ CA+C  S + SIC  CVN  LNEY   L SLK  R+    +LS +LV K K   Q 
Sbjct: 3   KSTKCAVCYKSFRPSICVDCVNRGLNEYKVKLDSLKSLREVSYFRLSGLLVTKEKAISQR 62

Query: 64  NWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRVEQL 123
            W+ LQ+EKLA+L+EKL+   E++ Q +    ++S +LK +YG++ES    LE++RV QL
Sbjct: 63  CWKELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERYGIIESTNVALEESRVHQL 122

Query: 124 EKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYDQIC 183
           E  Y + I    L  + +TSERL+KQ++V+KQICKLFP  RV +EG+ KDG S QYDQIC
Sbjct: 123 ENHYSDTIGNHYL--IDLTSERLYKQALVMKQICKLFPLSRVTVEGQNKDGSSVQYDQIC 180

Query: 184 NARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRDSYW 243
           NA LP+ L+P SVP +EL+ASLGYMVQLLNLV+H L+ PALHN GFAGSCSRIW+RDSYW
Sbjct: 181 NALLPQGLNPLSVPPKELAASLGYMVQLLNLVVHKLSVPALHNLGFAGSCSRIWERDSYW 240

Query: 244 DARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXX--XXXXX 301
           ++ PSS SN YPLF+P  ++ S   ++SW+ + ++NFGV S++SD     D         
Sbjct: 241 NSYPSSPSNGYPLFVPIHDHYSFEEKSSWTGRDTTNFGVTSLKSDGSIEEDYHDLDLDVV 300

Query: 302 XXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATLS 361
                    V+T ++LQ+GI+ LK+SVA +T Y Y SL L+VPS  STFE FAKLLATLS
Sbjct: 301 SLSSASPHSVETFRNLQQGIAHLKQSVAHLTVYGYRSLSLEVPSGTSTFETFAKLLATLS 360

Query: 362 SSKEVRSVFSLKMARSRTCKQVQQLNKSVW 391
           S KEV+S  SL ++ S   KQ  + NKSVW
Sbjct: 361 SLKEVQSGLSLGLSSSN--KQRHEPNKSVW 388


>AT1G77890.2 | Symbols:  | DNA-directed RNA polymerase II protein |
           chr1:29292497-29295440 FORWARD LENGTH=449
          Length = 449

 Score =  350 bits (899), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/390 (50%), Positives = 257/390 (65%), Gaps = 15/390 (3%)

Query: 4   KTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGDDQT 63
           K++ CA+C  S + SIC  CVN  LNEY   L SLK  R+    +LS +LV K K   Q 
Sbjct: 3   KSTKCAVCYKSFRPSICVDCVNRGLNEYKVKLDSLKSLREVSYFRLSGLLVTKEKAISQR 62

Query: 64  NWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRVEQL 123
            W+ LQ+EKLA+L+EKL+   E++ Q +    ++S +LK +YG++ES    LE++RV QL
Sbjct: 63  CWKELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERYGIIESTNVALEESRVHQL 122

Query: 124 EKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYDQIC 183
           E  Y + I    L +           ++V+KQICKLFP  RV +EG+ KDG S QYDQIC
Sbjct: 123 ENHYSDTIGNHYLVY-----------ALVMKQICKLFPLSRVTVEGQNKDGSSVQYDQIC 171

Query: 184 NARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRDSYW 243
           NA LP+ L+P SVP +EL+ASLGYMVQLLNLV+H L+ PALHN GFAGSCSRIW+RDSYW
Sbjct: 172 NALLPQGLNPLSVPPKELAASLGYMVQLLNLVVHKLSVPALHNLGFAGSCSRIWERDSYW 231

Query: 244 DARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXX--XXXXX 301
           ++ PSS SN YPLF+P  ++ S   ++SW+ + ++NFGV S++SD     D         
Sbjct: 232 NSYPSSPSNGYPLFVPIHDHYSFEEKSSWTGRDTTNFGVTSLKSDGSIEEDYHDLDLDVV 291

Query: 302 XXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATLS 361
                    V+T ++LQ+GI+ LK+SVA +T Y Y SL L+VPS  STFE FAKLLATLS
Sbjct: 292 SLSSASPHSVETFRNLQQGIAHLKQSVAHLTVYGYRSLSLEVPSGTSTFETFAKLLATLS 351

Query: 362 SSKEVRSVFSLKMARSRTCKQVQQLNKSVW 391
           S KEV+S  SL ++ S   KQ  + NKSVW
Sbjct: 352 SLKEVQSGLSLGLSSSN--KQRHEPNKSVW 379