Miyakogusa Predicted Gene

Lj0g3v0284249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284249.1 tr|B9GQC4|B9GQC4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_816607 PE=4
SV=1,49.19,2e-18,seg,NULL,CUFF.18948.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46100.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    78   1e-15
AT2G46100.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    78   1e-15

>AT2G46100.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr2:18953326-18954082 FORWARD LENGTH=229
          Length = 229

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 51/85 (60%), Gaps = 10/85 (11%)

Query: 35  IRCNGTNPN---QQDDSQAQNNPLLKIAWYSSELLGIAASAFRSP------SGVEAPPQR 85
           + C G NP    Q       +N LLKIAWY SELLGIAAS FRSP      +G E P   
Sbjct: 37  VSCRGQNPTDEPQTSKGPEPDNVLLKIAWYGSELLGIAASVFRSPETSPIVTGFEVPVDC 96

Query: 86  LLETIDRAAVVDTIKQDFQRSYFVT 110
               + R AVVD+IKQDF+RSYFVT
Sbjct: 97  SGRAV-RVAVVDSIKQDFKRSYFVT 120


>AT2G46100.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr2:18953326-18954467 FORWARD LENGTH=240
          Length = 240

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 51/85 (60%), Gaps = 10/85 (11%)

Query: 35  IRCNGTNPN---QQDDSQAQNNPLLKIAWYSSELLGIAASAFRSP------SGVEAPPQR 85
           + C G NP    Q       +N LLKIAWY SELLGIAAS FRSP      +G E P   
Sbjct: 37  VSCRGQNPTDEPQTSKGPEPDNVLLKIAWYGSELLGIAASVFRSPETSPIVTGFEVPVDC 96

Query: 86  LLETIDRAAVVDTIKQDFQRSYFVT 110
               + R AVVD+IKQDF+RSYFVT
Sbjct: 97  SGRAV-RVAVVDSIKQDFKRSYFVT 120