Miyakogusa Predicted Gene

Lj0g3v0284239.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284239.1 Non Chatacterized Hit- tr|Q4VSY9|Q4VSY9_PINLO
Putative LEA protein (Fragment) OS=Pinus longaeva
GN=i,52.27,9e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Water Stress and Hypersensitive response,Water stre,CUFF.18941.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01470.1 | Symbols: LEA14, LSR3 | Late embryogenesis abundant...   209   4e-55
AT2G46140.1 | Symbols:  | Late embryogenesis abundant protein | ...   187   2e-48
AT2G44060.2 | Symbols:  | Late embryogenesis abundant protein, g...    89   1e-18
AT2G44060.1 | Symbols:  | Late embryogenesis abundant protein, g...    89   1e-18

>AT1G01470.1 | Symbols: LEA14, LSR3 | Late embryogenesis abundant
           protein | chr1:172295-172826 REVERSE LENGTH=151
          Length = 151

 Score =  209 bits (533), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 121/151 (80%)

Query: 1   MSQLLNKAKNFVSEKVNDVAKPEASVTNVDFQRVTKDSVEYLANVSVHNPYSTPIPICEI 60
           M+ LL+KAK+FV++K+  + KPE SVT+VD + V +DSVEYLA VSV NPYS  IPICEI
Sbjct: 1   MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI 60

Query: 61  NYSFKSATREIASGRIPDPGSLKAKDMTMVNVPVKVPYSILMSLAKDIGADWDIDYQLDI 120
           +++F SA REI  G+IPDPGSLKAKDMT +++PV VPYSIL +LA+D+G DWDIDY+L I
Sbjct: 61  SFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQI 120

Query: 121 GLVIDLPAIGNFTIPLSHKGEVKLPNPASMF 151
           GL IDLP +G FTIP+S KGE+KLP     F
Sbjct: 121 GLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151


>AT2G46140.1 | Symbols:  | Late embryogenesis abundant protein |
           chr2:18959163-18960362 FORWARD LENGTH=166
          Length = 166

 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 114/151 (75%)

Query: 1   MSQLLNKAKNFVSEKVNDVAKPEASVTNVDFQRVTKDSVEYLANVSVHNPYSTPIPICEI 60
           +S LL+KAK F +EK+ ++  PEA+V +VDF+ VT+D V+Y A VSV NPYS  IPIC+I
Sbjct: 16  ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQI 75

Query: 61  NYSFKSATREIASGRIPDPGSLKAKDMTMVNVPVKVPYSILMSLAKDIGADWDIDYQLDI 120
           +Y  KSATR IASG IPDPGSL     T+++VPVKV YSI +SL KD+  DWDIDYQLDI
Sbjct: 76  SYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDI 135

Query: 121 GLVIDLPAIGNFTIPLSHKGEVKLPNPASMF 151
           GL  D+P +G+ TIP+S +GE+KLP+    F
Sbjct: 136 GLTFDIPVVGDITIPVSTQGEIKLPSLRDFF 166


>AT2G44060.2 | Symbols:  | Late embryogenesis abundant protein,
           group 2 | chr2:18226922-18227988 FORWARD LENGTH=325
          Length = 325

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 6/148 (4%)

Query: 4   LLNKAKNFV---SEKVNDV---AKPEASVTNVDFQRVTKDSVEYLANVSVHNPYSTPIPI 57
            L+K K+F+    EK+       KP A V+ +   ++  +  + + +V V NP   PIP+
Sbjct: 42  FLDKVKDFIHDIGEKLEGTIGFGKPTADVSAIHIPKINLERADIVVDVLVKNPNPVPIPL 101

Query: 58  CEINYSFKSATREIASGRIPDPGSLKAKDMTMVNVPVKVPYSILMSLAKDIGADWDIDYQ 117
            ++NY  +S  R++ SG IPD G+LKA     V +P+ + Y  + S   DI     I Y+
Sbjct: 102 IDVNYLVESDGRKLVSGLIPDAGTLKAHGEETVKIPLTLIYDDIKSTYNDINPGMIIPYR 161

Query: 118 LDIGLVIDLPAIGNFTIPLSHKGEVKLP 145
           + + L++D+P +G  T+PL   GE+ +P
Sbjct: 162 IKVDLIVDVPVLGRLTLPLEKCGEIPIP 189


>AT2G44060.1 | Symbols:  | Late embryogenesis abundant protein,
           group 2 | chr2:18226922-18227988 FORWARD LENGTH=325
          Length = 325

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 6/148 (4%)

Query: 4   LLNKAKNFV---SEKVNDV---AKPEASVTNVDFQRVTKDSVEYLANVSVHNPYSTPIPI 57
            L+K K+F+    EK+       KP A V+ +   ++  +  + + +V V NP   PIP+
Sbjct: 42  FLDKVKDFIHDIGEKLEGTIGFGKPTADVSAIHIPKINLERADIVVDVLVKNPNPVPIPL 101

Query: 58  CEINYSFKSATREIASGRIPDPGSLKAKDMTMVNVPVKVPYSILMSLAKDIGADWDIDYQ 117
            ++NY  +S  R++ SG IPD G+LKA     V +P+ + Y  + S   DI     I Y+
Sbjct: 102 IDVNYLVESDGRKLVSGLIPDAGTLKAHGEETVKIPLTLIYDDIKSTYNDINPGMIIPYR 161

Query: 118 LDIGLVIDLPAIGNFTIPLSHKGEVKLP 145
           + + L++D+P +G  T+PL   GE+ +P
Sbjct: 162 IKVDLIVDVPVLGRLTLPLEKCGEIPIP 189