Miyakogusa Predicted Gene

Lj0g3v0284229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284229.1 Non Chatacterized Hit- tr|F6HMR5|F6HMR5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.21,5e-19,LEA14-like,NULL; seg,NULL; LEA_2,Late embryogenesis
abundant protein, LEA-14,CUFF.18945.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46150.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...   166   9e-42
AT3G54200.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    89   2e-18
AT1G64065.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    72   3e-13
AT3G05975.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    69   2e-12
AT4G23610.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    65   4e-11
AT4G13270.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    50   8e-07
AT1G52330.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    50   1e-06

>AT2G46150.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr2:18961424-18962089 FORWARD LENGTH=221
          Length = 221

 Score =  166 bits (421), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 8/221 (3%)

Query: 1   MADTDQERPLAPARVH--VDEEALKTKR----KRKIKWCGCVTVPXXXXXXXXXXXAFTV 54
           MAD++  RPLAPA +    DE A   K     + +IK   CVT              FTV
Sbjct: 1   MADSEHVRPLAPATILPVSDESASNIKNTHRSRNRIKCSICVTATSLILTTIVLTLVFTV 60

Query: 55  FKVKEPKVTTKGITITDFDLILNQGTTPTVKLNMTMMIDMSIKNPNVGSFKLGNTTTTIY 114
           F+VK+P +   G+ +   D +        +  N++M++D+S+KNPN  SFK  NTTT IY
Sbjct: 61  FRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTDIY 120

Query: 115 YRGAVVAEARTPPGMVKARKTSGMNVTVDILADRLASSPNLMTDVI-GGKMTMDTYSIIP 173
           Y+G +V EA   PG  +  +TS MNVTVDI+ DR+ S P L  ++   G + + +Y+ + 
Sbjct: 121 YKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSYTRVG 180

Query: 174 GRVKIV-FVKKHVEVRMNCTVTVNISSRAIQDMICKRKVKL 213
           G+VKI+  VKKHV V+MNCT+ VNI+ +AIQD+ CK+K+ L
Sbjct: 181 GKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKIDL 221


>AT3G54200.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr3:20065731-20066438 FORWARD LENGTH=235
          Length = 235

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 3/195 (1%)

Query: 21  ALKTKRKRKIKWCGCVTVPXXXXXXXXXXXA-FTVFKVKEPKVTTKGITITDFDLILNQG 79
           A K +RKR  K C C T+              FT+FK K P  T   +T+      +N  
Sbjct: 42  AKKLRRKRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPL 101

Query: 80  TTPTVKLNMTMMIDMSIKNPNVGSFKLGNTTTTIYYRGAVVAEARTPPGMVKARKTSGMN 139
               V LN+T+ +D+S+KNPN   F   +++  + YRG V+ EA  P   + ARKT  +N
Sbjct: 102 LL-KVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLN 160

Query: 140 VTVDILADRLASSPNLMTDVIGGKMTMDTYSIIPGRVKIVFVKK-HVEVRMNCTVTVNIS 198
           +T+ ++ADRL S   L++DV+ G + ++T+  + G+V ++ + K  V+   +C +++++S
Sbjct: 161 ITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVS 220

Query: 199 SRAIQDMICKRKVKL 213
            R +    CK   KL
Sbjct: 221 DRNVTSQHCKYSTKL 235


>AT1G64065.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:23778628-23779272 FORWARD LENGTH=214
          Length = 214

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 88/156 (56%), Gaps = 5/156 (3%)

Query: 55  FKVKEPKVTTKGITITDFDLILNQGTTPTVKLNMTMMIDMSIKNPNVGSFKLGNTTT-TI 113
            ++ +P++ T+ I+  D   + + G +     N T++ D+SI+N N G+F+  ++T   +
Sbjct: 62  LRISKPEIETRSISTRD---LRSGGNSTNPYFNATLVSDISIRNSNFGAFEFEDSTLRVV 118

Query: 114 YYRGAVVAEARTPPGMVKARKTSGM-NVTVDILADRLASSPNLMTDVIGGKMTMDTYSII 172
           Y    VV E +     V+A KT  +  V V+I + RL  + +L  D+  G + + + + +
Sbjct: 119 YADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAEV 178

Query: 173 PGRVKIVFVKKHVEVRMNCTVTVNISSRAIQDMICK 208
            GR+K++  K+     M+CT+ +N++ R IQ+++C+
Sbjct: 179 RGRIKVLGRKRWKVSVMSCTMRLNLTGRFIQNLLCE 214


>AT3G05975.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr3:1792145-1792714 REVERSE LENGTH=189
          Length = 189

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 54  VFKVKEPKVTTKGITITDFDLILNQGTTP-TVKLNMTMMIDMSIKNPNVGSFKLGNTTTT 112
           VFK K P + T   T+   D I    + P  V+LN T+ ++M +KNPNV  F+       
Sbjct: 30  VFKPKHPILQTVSSTV---DGISTNISLPYEVQLNFTLTLEMLLKNPNVADFEYKTVENL 86

Query: 113 IYYRGAVVAEARTPPGMVKARKTSGMNVTVDILADRL-ASSPNLMTDVIGGKMTMDTYSI 171
           +YYR  +V     P   + A+ +  +   + +  D+  A+  +++ DV+ GK+ M+T + 
Sbjct: 87  VYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAK 146

Query: 172 IPGRVKIV-FVKKHVEVRMNCTVTVNISSRAIQDMICKRKVKL 213
           +PG++ ++   K  ++   +C + +   S  ++D +C  K KL
Sbjct: 147 MPGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLKTKL 189


>AT4G23610.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr4:12314037-12314723 FORWARD LENGTH=228
          Length = 228

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 20/206 (9%)

Query: 3   DTDQERPLAPA-------------RVHVDEEALKTKRKRKIKWCGCVTVPXXXXXXXXXX 49
           + DQ +PLAP              + H D       + + I  CG +             
Sbjct: 9   NEDQAKPLAPLFLTTRSDQPDEEDQYHHDRTKYVHSQTKLILCCGFIASLTMLIAVTFIV 68

Query: 50  XAFTVFKVKEPKVTTKGITITD-FDLILNQGTTPTVKLNMTMMIDMSIKNPNVGSFKLGN 108
            + TVF +  P +T   I+    FD +   G   T + N T+ +++S+ NPN   F + N
Sbjct: 69  LSLTVFHLHSPNLTVDSISFNQRFDFV--NGKVNTNQ-NTTVSVEISLHNPNPALFIVKN 125

Query: 109 TTTTIYY-RGAVVAEARTPPGMVKARKTSGMNVTVDILADRL-ASSPNLMTDVIGGKMTM 166
              + Y+    VV E+      + A++T  MN+T +I+  +L AS P LM D+ G  + +
Sbjct: 126 VNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGRGVDL 185

Query: 167 DTYSIIPGRV-KIVFVKKHVEVRMNC 191
            +   + GRV K+   +K V ++ +C
Sbjct: 186 KSSVEVRGRVKKMKIFRKTVHLQTDC 211


>AT4G13270.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr4:7731280-7732902 FORWARD LENGTH=215
          Length = 215

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 51  AFTVFKVKEPKVTTKGITITDFDLILNQGTTPTVKLNMTMMIDMSIKNPNVGSFKLGNTT 110
           A  +    +P +T   I +    ++     +  + L+++  + + ++N +  S    +  
Sbjct: 59  AVYLLYPSDPDITVSRINLNHISVV----DSHKIALDLSFSLTIKVRNRDFFSLDYDSLV 114

Query: 111 TTIYYRGAVVAEARTPPGMVKARKTSGMNVTVDILADRLASSPN---LMTDVIGGKMTMD 167
            +I YRG  +   ++  G +KAR +S ++ T+++  D L    +   L+ D+  G +  D
Sbjct: 115 VSIGYRGRELGLVKSKGGHLKARDSSYIDATLEL--DGLEVVHDVIYLIGDLAKGVIPFD 172

Query: 168 TYSIIPGRVKIVFVKKHVEVRMNCTVTVNISSRAIQDMICKRK 210
           T + + G + ++     ++ +++C V VN++++ I    C RK
Sbjct: 173 TIAQVQGDLGVLLFNIPIQGKVSCEVYVNVNNQKISHQDCHRK 215


>AT1G52330.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:19488962-19489763 FORWARD LENGTH=214
          Length = 214

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 82  PTVKLNMTMMIDMSIKNPNVGSFKLGNTTTTIYYRGAVVAEARTPPGMVKARKTSGMNVT 141
           P   ++MT+++ + + N +V SF   +   TI YRG  +    +  G V A  +S ++  
Sbjct: 85  PVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAE 144

Query: 142 VDILADRLASSP---NLMTDVIGGKMTMDTYSIIPGRVKIVFVKKHVEVRMNCTVTVNIS 198
            ++  D +   P   +L+ D+  G +  DT +   G++ ++F +  ++ ++ C + V+  
Sbjct: 145 AEL--DGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKAKVACGILVDTV 202

Query: 199 SRAIQDMICK 208
           ++ I    C 
Sbjct: 203 NQTISRQSCS 212