Miyakogusa Predicted Gene

Lj0g3v0283989.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0283989.1 tr|A9S173|A9S173_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162224,47.5,0.00000000000003,seg,NULL; FBOX,F-box
domain, cyclin-like,CUFF.18922.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35930.1 | Symbols:  | F-box family protein | chr4:17019482-1...   147   3e-36
AT1G61340.1 | Symbols:  | F-box family protein | chr1:22628526-2...    72   1e-13
AT4G21510.1 | Symbols:  | F-box family protein | chr4:11446193-1...    66   1e-11
AT4G05010.1 | Symbols:  | F-box family protein | chr4:2567474-25...    58   5e-09
AT1G61340.2 | Symbols:  | F-box family protein | chr1:22628526-2...    54   7e-08

>AT4G35930.1 | Symbols:  | F-box family protein |
           chr4:17019482-17020744 FORWARD LENGTH=321
          Length = 321

 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/187 (44%), Positives = 105/187 (56%), Gaps = 58/187 (31%)

Query: 27  YLKPGTLAQLRCNRSSGSGG-------------GKACTDLGKKRVAV------------- 60
           YLKPG L QL  +++S +                K+C DLGKKRV V             
Sbjct: 27  YLKPGALVQLCYSKASAAKSCNELGKKRVPVFDTKSCNDLGKKRVPVFDIKHARNNKMAV 86

Query: 61  --------------------------------GLNSRETVEKSPVMLSPVNLVRQNSLLG 88
                                            + S  T +KSP+MLSP+ +V QN+LL 
Sbjct: 87  EQLNSPKSPLMLSPVNVVKRSTLVRPMKFDDLQVESNNTCKKSPLMLSPMGIVMQNTLLR 146

Query: 89  TPKTPRIEEPQSDSRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNY 148
           TPKTP+ +   S+S+LESLPMD+LVK++CHLHHDQLKAVFHVS+RIR A I+ARQ+HFNY
Sbjct: 147 TPKTPQADPCVSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNY 206

Query: 149 TTPDRSR 155
           TTPDRSR
Sbjct: 207 TTPDRSR 213


>AT1G61340.1 | Symbols:  | F-box family protein |
           chr1:22628526-22629741 FORWARD LENGTH=185
          Length = 185

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 9/102 (8%)

Query: 53  LGKKRVAVGLNSRETVEKSPVMLSPVNLVRQNSLLGTPKTPRIEEPQSDSRLESLPMDVL 112
            G+KR+ +  +S + +E S +  SPV        L   KT  + E QS   LE LP+D+L
Sbjct: 39  FGRKRILI--SSGDEMEDS-IFTSPVG-----KKLCDDKTTSVAEGQS-RELEDLPLDIL 89

Query: 113 VKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRS 154
           V+++C + H+ LK +FHVS+ IR+A ++A+Q HF Y+TP ++
Sbjct: 90  VRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKT 131


>AT4G21510.1 | Symbols:  | F-box family protein |
           chr4:11446193-11447025 REVERSE LENGTH=225
          Length = 225

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 12/111 (10%)

Query: 53  LGKKRVAVGLNSRETVEKSPVMLSPVN--------LVRQNSLLGTPKTPRIEEPQSDSRL 104
           LG+KR+ +    RE++ +S V +  V+        L RQ S +    +   E+    SRL
Sbjct: 69  LGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEK----SRL 124

Query: 105 ESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRSR 155
           E LP D+L++++C + H+ LK++  VS+ IR+A +VA+  HF YTTP ++R
Sbjct: 125 ECLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTR 175


>AT4G05010.1 | Symbols:  | F-box family protein |
           chr4:2567474-2568162 FORWARD LENGTH=164
          Length = 164

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 38/50 (76%)

Query: 102 SRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTP 151
           S LE+L  D+L+++LCH+ H+ L  +  VS+ IRKAVI A++ HF+Y+TP
Sbjct: 62  SLLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTP 111


>AT1G61340.2 | Symbols:  | F-box family protein |
           chr1:22628526-22629741 FORWARD LENGTH=231
          Length = 231

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 35/44 (79%)

Query: 111 VLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRS 154
           V+V+++C + H+ LK +FHVS+ IR+A ++A+Q HF Y+TP ++
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKT 177