Miyakogusa Predicted Gene

Lj0g3v0283439.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0283439.1 Non Chatacterized Hit- tr|I3SXX5|I3SXX5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0.00000002,
,CUFF.18881.1
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31460.1 | Symbols:  | Ribosomal L28 family | chr4:15259773-1...    59   7e-10

>AT4G31460.1 | Symbols:  | Ribosomal L28 family |
          chr4:15259773-15260847 REVERSE LENGTH=212
          Length = 212

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 12/45 (26%)

Query: 1  MGRAKRGLFAGRHIQFGNTVSEDGGNKFVPTHFFISFCFCQNCWK 45
          MGRAKRGL+AGRHIQ+GN VSEDGGNK             + CWK
Sbjct: 40 MGRAKRGLYAGRHIQYGNRVSEDGGNK------------SRRCWK 72