Miyakogusa Predicted Gene

Lj0g3v0283279.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0283279.2 tr|B9IQU7|B9IQU7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_574407 PE=4
SV=1,46.61,1e-18,coiled-coil,NULL; seg,NULL,CUFF.18871.2
         (467 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59670.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   246   2e-65
AT4G37440.2 | Symbols:  | unknown protein; LOCATED IN: cellular_...   135   4e-32
AT4G37440.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   135   5e-32
AT3G50040.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    91   2e-18

>AT3G59670.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in
           14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4
           (source: NCBI BLink). | chr3:22040485-22042380 FORWARD
           LENGTH=517
          Length = 517

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 219/388 (56%), Gaps = 21/388 (5%)

Query: 16  DEPINPTKAFEDTEVDILNWTNKGDIASNKNEDPDATEYSSSFADTTSEAENDARXXXXX 75
           +E +      E+ +VDI+   +  +  S  +EDP+ATEYSSSF+DT SE           
Sbjct: 46  EETVTSVSGGEELDVDIVE--SDENKTSTTDEDPNATEYSSSFSDTASENAEMLLDGLTG 103

Query: 76  XXXXXXXXXXXXXFGAIFPISS-----KKMKLSDHWKNFIQPIRWRCKWVELKLKQFESQ 130
                         G  +   S     +K +L++HW+ FI+P+ WR KWVEL++++ ES+
Sbjct: 104 EAEVESHYWDETDLGPAYDSFSSIFHFRKKRLTNHWRRFIRPLMWRSKWVELRIRELESR 163

Query: 131 ALKYSEELAEYDKRK-HGKPDHFTLEE--KGSKSFPFLNDVYXXXXXXXXXXXX-VEETP 186
           AL+Y +EL  YD+ K     D   LE   +G KS PF N  Y             VE T 
Sbjct: 164 ALEYPKELELYDQEKLEANIDPSVLESCGEGIKSLPFSNPCYKKRAAKKRRKRKKVESTD 223

Query: 187 DLASYTSHHVLFSYLENKKSDADG-ALADDFDNPVIKEACEDSTDRVGDDDEQSFFEFSE 245
           D+ASY + H LFSY+E K+  +DG  LADDF +   K+   DS + V  DD  S F   +
Sbjct: 224 DIASYMACHNLFSYIETKRLSSDGMGLADDFGDA--KDPRSDSNEPVDLDDADSLFHHRD 281

Query: 246 ADASLEQILWSIDLMQSRVHKMKNDVDAIMTTNASKISPYENYCFRYDDEGSSSARSP-M 304
            D+ LE++LW I+L+ S+VH++K  VD +++ N ++ S  EN         +SSA SP +
Sbjct: 282 GDSVLEEVLWKIELVHSQVHRLKTQVDVVLSKNTARFSSSENLSLL----AASSAPSPTV 337

Query: 305 NSGEIGDTASVGGVYNSTQHAPEFDFGDFMMA-ESTVSGYGKVATVPDIIESTVGLLSSA 363
           ++G  GD  S G +YN++QH  ++  GD + + E  +S YG    +PDIIESTVGL + A
Sbjct: 338 SAGGNGDVISFGAIYNASQHMADYGLGDIVFSSEGVISSYGDAFHIPDIIESTVGLFADA 397

Query: 364 DVTLHQDFVGDSCEDMVDNVLMHE-VAE 390
           DVTLH   +GDSCED++DN+L+   VAE
Sbjct: 398 DVTLHHHQIGDSCEDILDNILIRNGVAE 425


>AT4G37440.2 | Symbols:  | unknown protein; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G50040.1);
           Has 121 Blast hits to 117 proteins in 32 species: Archae
           - 0; Bacteria - 6; Metazoa - 13; Fungi - 5; Plants - 66;
           Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
           | chr4:17601647-17603766 FORWARD LENGTH=444
          Length = 444

 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 20/266 (7%)

Query: 25  FEDTEVDILNWTNKGDIASNKNEDPDATEYSSSFADTTSEAENDARXXXXXXXXXXXXXX 84
           F++ EVDIL   +  +I  +  +D     YSSSF  T SE END                
Sbjct: 68  FDEDEVDILECNDNIEIQVSGCDD-GTDGYSSSFGGTDSEHENDQEVDSMICNETS---- 122

Query: 85  XXXXFGAIFPISSKKMKLSDHWKNFIQP-IRWRCKWVELKLKQFESQALKYSEELAEYDK 143
                    P+  +K KL+DHW+ F+QP + WRCKW+ELK K+ ++QA KY +E+ EY +
Sbjct: 123 --------LPLWVRKRKLTDHWRRFVQPTLMWRCKWIELKYKELQNQAQKYDKEVEEYYQ 174

Query: 144 RKHGKPDHFTLEEKGSKSFPFLNDVYXXXXX--XXXXXXXVEETPDLASYTSHHVLFSYL 201
            K  + ++   EE G K+ P L   Y              VEET D+ SY S+H LFSY 
Sbjct: 175 AKKLELENVKSEELGVKALPPL-PCYTQKTRLMKRKTRKRVEETADVTSYASNHNLFSYY 233

Query: 202 ENKKSDADGALADDFDNPVIKEACEDSTDRVGDDDEQSFFEFSEADASLEQILWSIDLMQ 261
           + +KS AD AL D+  N  + +  + + D     +E    EF E DA LEQIL  I+  +
Sbjct: 234 DCRKSLADIALNDNSRN--LDKKNKSAKDETAFSEETPPLEFREGDAYLEQILLKIEAAK 291

Query: 262 SRVHKMKNDVDAIMTTNASKISPYEN 287
           S    +K  VD +++ N S I P  N
Sbjct: 292 SEARNLKIRVDKVLSENPS-IFPLAN 316


>AT4G37440.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G50040.1); Has 220 Blast hits to 205 proteins
           in 55 species: Archae - 0; Bacteria - 15; Metazoa - 50;
           Fungi - 11; Plants - 76; Viruses - 3; Other Eukaryotes -
           65 (source: NCBI BLink). | chr4:17601647-17603846
           FORWARD LENGTH=471
          Length = 471

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 20/266 (7%)

Query: 25  FEDTEVDILNWTNKGDIASNKNEDPDATEYSSSFADTTSEAENDARXXXXXXXXXXXXXX 84
           F++ EVDIL   +  +I  +  +D     YSSSF  T SE END                
Sbjct: 68  FDEDEVDILECNDNIEIQVSGCDD-GTDGYSSSFGGTDSEHENDQEVDSMICNETS---- 122

Query: 85  XXXXFGAIFPISSKKMKLSDHWKNFIQP-IRWRCKWVELKLKQFESQALKYSEELAEYDK 143
                    P+  +K KL+DHW+ F+QP + WRCKW+ELK K+ ++QA KY +E+ EY +
Sbjct: 123 --------LPLWVRKRKLTDHWRRFVQPTLMWRCKWIELKYKELQNQAQKYDKEVEEYYQ 174

Query: 144 RKHGKPDHFTLEEKGSKSFPFLNDVYXXXXX--XXXXXXXVEETPDLASYTSHHVLFSYL 201
            K  + ++   EE G K+ P L   Y              VEET D+ SY S+H LFSY 
Sbjct: 175 AKKLELENVKSEELGVKALPPL-PCYTQKTRLMKRKTRKRVEETADVTSYASNHNLFSYY 233

Query: 202 ENKKSDADGALADDFDNPVIKEACEDSTDRVGDDDEQSFFEFSEADASLEQILWSIDLMQ 261
           + +KS AD AL D+  N  + +  + + D     +E    EF E DA LEQIL  I+  +
Sbjct: 234 DCRKSLADIALNDNSRN--LDKKNKSAKDETAFSEETPPLEFREGDAYLEQILLKIEAAK 291

Query: 262 SRVHKMKNDVDAIMTTNASKISPYEN 287
           S    +K  VD +++ N S I P  N
Sbjct: 292 SEARNLKIRVDKVLSENPS-IFPLAN 316


>AT3G50040.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G37440.2); Has 70 Blast hits to 70 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:18549489-18551019 REVERSE
           LENGTH=421
          Length = 421

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 99  KMKLSDHWKNFIQPIRWRCKWVELKLKQFESQALKYSEELAEYDKRKHGKPDHFTLEEKG 158
           K K +D W+   +PI WRCKW+ELK+K+ +SQA  Y +E+ +Y   K    +   LE   
Sbjct: 108 KKKTNDRWRRLTKPIMWRCKWIELKVKEIQSQARGYEKEVKDYYLTKQFDLEKSKLEGFD 167

Query: 159 SKSFPFLNDVYXXXXXXXXXXXXVEETPDLASYTSHHVLFSYLENK-KSDADGALAD-DF 216
            KS PF  +              VEET D+A+Y S+H LFSY + +   +  G   D DF
Sbjct: 168 GKSIPFRENNQRRNVFKRGRRKRVEETTDVAAYMSNHNLFSYADKRVPVNVKGQYLDSDF 227

Query: 217 DNPVIKEACEDSTDRVGDDDEQSFFEFSEADASLEQILWSIDLMQSRVHKMKNDVDAIM 275
                    +D+      +D+    E   +D  L + L  ID  Q +  +++  VD +M
Sbjct: 228 GTGRKATGKQDAI-----EDDSLISELDCSDDVLAKFLCKIDEAQGKARRLRKRVDQLM 281