Miyakogusa Predicted Gene

Lj0g3v0282959.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0282959.1 Non Chatacterized Hit- tr|I3SP62|I3SP62_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.6,0,RING/U-box,NULL; ZF_RING_1,Zinc finger, RING-type,
conserved site; seg,NULL; RNF5,NULL; Ring finger,,CUFF.18840.1
         (248 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | c...   185   2e-47
AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c...   164   6e-41
AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c...   164   6e-41
AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | c...   120   9e-28
AT1G19310.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   108   3e-24
AT2G23780.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   106   2e-23
AT1G74990.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   100   1e-21
AT3G58030.4 | Symbols:  | RING/U-box superfamily protein | chr3:...    99   3e-21
AT3G58030.3 | Symbols:  | RING/U-box superfamily protein | chr3:...    99   3e-21
AT3G58030.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    99   3e-21
AT3G58030.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    99   3e-21
AT2G42030.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    98   4e-21
AT2G44410.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    86   2e-17
AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:112177...    60   1e-09
AT3G26730.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    51   8e-07
AT5G01960.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    48   6e-06

>AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 |
           chr4:13735576-13736307 FORWARD LENGTH=243
          Length = 243

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/231 (46%), Positives = 138/231 (59%), Gaps = 23/231 (9%)

Query: 9   NGEVSPKQKLKSTSAESPISSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQ 68
           NG ++ KQK   T+A +   ++++GCFDCNICL++AHDPVVTLCGHL+CWPCIYKWL VQ
Sbjct: 17  NGFIA-KQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQ 75

Query: 69  SSSAEPDQQQ-TCPICKAEISHTSLVPLYGRGTSNSES---ESKKLQMGLGIPQRPPPYN 124
            SS   DQ Q  CP+CK+ I+ TSLVPLYGRG S+  S     K+  +   IP+RP P  
Sbjct: 76  LSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSA 135

Query: 125 LNAMLTSNRASNPHLGEQ-LYPSYFHSQSQPLHYQQHYLYGTHGANGLPYLGGAAMTSFF 183
           L   +TS  + NP L  Q L PS+ + Q  P  +       T   +    L  A M SF 
Sbjct: 136 LRNPITSASSLNPSLQHQTLSPSFHNHQYSPRGFTT-----TESTD----LANAVMMSFL 186

Query: 184 NPVIGMFGEMVLTRIFGVSDANLFPYPHSGSGSPRMRRQEMQIDKSLNRVS 234
            PVIGMFG++V TRIFG     +          P   ++ MQ +KSLNRVS
Sbjct: 187 YPVIGMFGDLVYTRIFGTFTNTI--------AQPYQSQRMMQREKSLNRVS 229


>AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
           chr4:1557905-1558654 REVERSE LENGTH=249
          Length = 249

 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 133/231 (57%), Gaps = 36/231 (15%)

Query: 16  QKLKSTSAESPISSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQ--SSSAE 73
           +K +  +   P   +D+  FDCNICL+S  +PVVTLCGHL+CWPCI+KWL VQ  S+S E
Sbjct: 27  KKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDE 86

Query: 74  PDQQQTCPICKAEISHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP--PPYNLNAMLTS 131
             + + CP+CK+++SH++LVPLYGRG   ++ E K       +P+RP  P Y L      
Sbjct: 87  YQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN-----SVPKRPVGPVYRLEM---- 137

Query: 132 NRASNPHLGEQLYPSYFHSQSQPLHY---QQHY--LYGTHGANGLPYLGGAAMTSFFNPV 186
              ++P+    L        SQ +H+   Q+ Y  + G   +N L Y      ++  +PV
Sbjct: 138 --PNSPYASTDL------RLSQRVHFNSPQEGYYPVSGVMSSNSLSY------SAVLDPV 183

Query: 187 IGMFGEMVLTRIFGVSDANLFPYPHS----GSGSPRMRRQEMQIDKSLNRV 233
           + M GEMV TR+FG    + F YP +    G+  PRMRR+ MQ DKSL R+
Sbjct: 184 MVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRI 234


>AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
           chr4:1557905-1558654 REVERSE LENGTH=249
          Length = 249

 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 133/231 (57%), Gaps = 36/231 (15%)

Query: 16  QKLKSTSAESPISSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQ--SSSAE 73
           +K +  +   P   +D+  FDCNICL+S  +PVVTLCGHL+CWPCI+KWL VQ  S+S E
Sbjct: 27  KKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDE 86

Query: 74  PDQQQTCPICKAEISHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP--PPYNLNAMLTS 131
             + + CP+CK+++SH++LVPLYGRG   ++ E K       +P+RP  P Y L      
Sbjct: 87  YQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN-----SVPKRPVGPVYRLEM---- 137

Query: 132 NRASNPHLGEQLYPSYFHSQSQPLHY---QQHY--LYGTHGANGLPYLGGAAMTSFFNPV 186
              ++P+    L        SQ +H+   Q+ Y  + G   +N L Y      ++  +PV
Sbjct: 138 --PNSPYASTDL------RLSQRVHFNSPQEGYYPVSGVMSSNSLSY------SAVLDPV 183

Query: 187 IGMFGEMVLTRIFGVSDANLFPYPHS----GSGSPRMRRQEMQIDKSLNRV 233
           + M GEMV TR+FG    + F YP +    G+  PRMRR+ MQ DKSL R+
Sbjct: 184 MVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRI 234


>AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 |
           chr4:14007614-14008195 REVERSE LENGTH=193
          Length = 193

 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 104/210 (49%), Gaps = 57/210 (27%)

Query: 33  GCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQ-------TCPICKA 85
           G FDCNICL+   DPVVTLCGHL+CWPCI+KW    ++S +   Q         CP+CK+
Sbjct: 17  GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76

Query: 86  EISHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP--PPYNLNAMLTSNRASNPHLGEQL 143
           ++S  +LVP+YGRG        K  Q G  +P RP  P Y+L       R     LGE  
Sbjct: 77  DVSEATLVPIYGRG-------QKAPQSGSNVPSRPTGPVYDL-------RGVGQRLGE-- 120

Query: 144 YPSYFHSQSQPLHYQQHYLYGTHGANGLPYLGGAAMTSFFNPVIGMFGEMVLTRIFGVSD 203
                          Q Y+Y       +P           +PV+G+  EMV  R+FG S 
Sbjct: 121 ------------GESQRYMY------RMP-----------DPVMGVVCEMVYRRLFGESS 151

Query: 204 ANLFPYPHSGSGSPRMRRQEMQIDKSLNRV 233
           +N+ PY        R RR+ MQ ++SL+RV
Sbjct: 152 SNMAPYRDMNV---RSRRRAMQAEESLSRV 178


>AT1G19310.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:6676424-6677104 REVERSE LENGTH=226
          Length = 226

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 7/86 (8%)

Query: 35  FDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEISHTSLVP 94
           F+CNICL+ A DP+VTLCGHL+CWPC+YKWL + S      Q + CP+CKA I    LVP
Sbjct: 21  FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHS------QSKDCPVCKAVIEEDRLVP 74

Query: 95  LYGRGTSNSESESKKLQMGLGIPQRP 120
           LYGRG S+++  SK +  GL +P RP
Sbjct: 75  LYGRGKSSADPRSKSIP-GLEVPNRP 99


>AT2G23780.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:10123551-10124234 REVERSE LENGTH=227
          Length = 227

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 61/93 (65%), Gaps = 7/93 (7%)

Query: 28  SSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEI 87
           ++   G F+CNIC E A DP+VTLCGHL+CWPC+Y+WL   S S E      CP+CKA +
Sbjct: 19  TNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQE------CPVCKAVV 72

Query: 88  SHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP 120
               LVPLYGRG + ++  SK+   GL IP RP
Sbjct: 73  QDDKLVPLYGRGKNQTDPRSKRYP-GLRIPNRP 104


>AT1G74990.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:28159837-28160250 REVERSE LENGTH=137
          Length = 137

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 14/114 (12%)

Query: 35  FDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEISHTSLVP 94
           F CNICLE A +P+VTLCGHL+CWPC+YKWL   S S        CP+CKA +   +LVP
Sbjct: 17  FGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKS------NHCPVCKALVKEDTLVP 70

Query: 95  LYGRGTSNSESESKKLQMGLGIPQRPPPYNLNAMLTSNRASNPHLGEQLYPSYF 148
           LYG G  +S+  S KL  G+ +P RP         T    + P L ++ + S F
Sbjct: 71  LYGMGKPSSDPRS-KLNSGVTVPNRPAA-------TRTETARPRLEQRHHGSSF 116


>AT3G58030.4 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 10/93 (10%)

Query: 28  SSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEI 87
           S SD   FDCNICL+ + +PV+T CGHLYCWPC+Y+WL +  +       + CP+CK E+
Sbjct: 130 SGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDA-------KECPVCKGEV 182

Query: 88  SHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP 120
           +  ++ P+YGRG    E E     +   +P RP
Sbjct: 183 TSKTVTPIYGRGNHKREIEES---LDTKVPMRP 212


>AT3G58030.3 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 10/93 (10%)

Query: 28  SSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEI 87
           S SD   FDCNICL+ + +PV+T CGHLYCWPC+Y+WL +  +       + CP+CK E+
Sbjct: 130 SGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDA-------KECPVCKGEV 182

Query: 88  SHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP 120
           +  ++ P+YGRG    E E     +   +P RP
Sbjct: 183 TSKTVTPIYGRGNHKREIEES---LDTKVPMRP 212


>AT3G58030.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 10/93 (10%)

Query: 28  SSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEI 87
           S SD   FDCNICL+ + +PV+T CGHLYCWPC+Y+WL +  +       + CP+CK E+
Sbjct: 130 SGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDA-------KECPVCKGEV 182

Query: 88  SHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP 120
           +  ++ P+YGRG    E E     +   +P RP
Sbjct: 183 TSKTVTPIYGRGNHKREIEES---LDTKVPMRP 212


>AT3G58030.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 10/93 (10%)

Query: 28  SSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEI 87
           S SD   FDCNICL+ + +PV+T CGHLYCWPC+Y+WL +  +       + CP+CK E+
Sbjct: 130 SGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDA-------KECPVCKGEV 182

Query: 88  SHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP 120
           +  ++ P+YGRG    E E     +   +P RP
Sbjct: 183 TSKTVTPIYGRGNHKREIEES---LDTKVPMRP 212


>AT2G42030.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:17539069-17540346 REVERSE LENGTH=425
          Length = 425

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 11/106 (10%)

Query: 30  SDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEISH 89
           SD   FDC ICL+ + DPVVT CGHLYCW C+Y+WL V        + + CP+CK E+S 
Sbjct: 134 SDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVS-------EAKECPVCKGEVSV 186

Query: 90  TSLVPLYGRGTSNSESESKKLQMGLGIPQRPPPYNLNAMLTS-NRA 134
            ++ P+YGRG    ESE         IP RP      ++ T+ NR+
Sbjct: 187 KTVTPIYGRGIQKRESEEVS---NTKIPSRPQARRTESLRTTLNRS 229


>AT2G44410.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:18328873-18330114 FORWARD LENGTH=413
          Length = 413

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 28  SSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEI 87
           SS   G FDCNICLE A DP++T CGHL+CW C Y+   +  +  E      CP+C  E+
Sbjct: 116 SSVPGGFFDCNICLEKAEDPILTCCGHLFCWGCFYQLPLIYLNIKE------CPVCDGEV 169

Query: 88  SHTSLVPLYGRGTSNSESESKKLQMGLGIPQRP 120
           +   ++P+YG G     ++ K    G+ +P RP
Sbjct: 170 TDAEVIPIYGNGDDCDGTKPKLEDCGISLPPRP 202


>AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 |
           chr2:11217767-11220415 REVERSE LENGTH=381
          Length = 381

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 9/69 (13%)

Query: 28  SSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEI 87
           S+S      C +CL +   P  T CGH++CW CI +W          +++Q CP+C+   
Sbjct: 318 STSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWC---------NEKQECPLCRTPN 368

Query: 88  SHTSLVPLY 96
           +H+SLV LY
Sbjct: 369 THSSLVCLY 377


>AT3G26730.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:9823770-9827270 FORWARD LENGTH=772
          Length = 772

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 37  CNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEISHTSLVPLY 96
           C ICLE    P +T CGH++C+PCI ++L     + + D  + CP+C   IS   L  +Y
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPCILQYLLTGVDNHKVDCFKRCPLCFVMISPRELYTVY 304


>AT5G01960.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:370811-372775 FORWARD LENGTH=426
          Length = 426

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 10/66 (15%)

Query: 37  CNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEISHTSLVPLY 96
           C IC E  H P++  C H++C  C+ +W          ++++TCP+C+A +    L   +
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDCVSEWF---------ERERTCPLCRALVKPADLKS-F 414

Query: 97  GRGTSN 102
           G G+++
Sbjct: 415 GDGSTS 420