Miyakogusa Predicted Gene

Lj0g3v0282539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0282539.1 Non Chatacterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95.9,0,WD40
repeat-like,WD40-repeat-containing domain; no description,WD40/YVTN
repeat-like-containing doma,CUFF.18803.1
         (536 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A | ...  1006   0.0  
AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A | ...  1004   0.0  
AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B | ...   974   0.0  
AT3G55200.1 | Symbols:  | Cleavage and polyadenylation specifici...    96   6e-20
AT3G55220.1 | Symbols:  | Cleavage and polyadenylation specifici...    96   6e-20
AT5G51660.1 | Symbols: CPSF160, ATCPSF160 | cleavage and polyade...    79   1e-14
AT3G11960.2 | Symbols:  | Cleavage and polyadenylation specifici...    55   2e-07
AT3G11960.1 | Symbols:  | Cleavage and polyadenylation specifici...    55   2e-07

>AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A |
            chr4:2746288-2752663 FORWARD LENGTH=1067
          Length = 1067

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/536 (88%), Positives = 515/536 (96%), Gaps = 1/536 (0%)

Query: 1    MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTS 60
            MWTDISVRIFSLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF ++T+
Sbjct: 533  MWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQMDTT 592

Query: 61   SGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 120
            +G+L DRKKVSLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM
Sbjct: 593  TGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 652

Query: 121  CPFNSAAIPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQSRTFAICSLK 180
            CPFNSAA PDSLAIA+EGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQ+RTF ICSL 
Sbjct: 653  CPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICSLG 712

Query: 181  YNHTSAEESESHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAYVL 240
             N +++EESE HFVRLLDDQTFEF+STYPLD++EYGC I+SCSF++D NVYYCVGTAYVL
Sbjct: 713  -NQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKNVYYCVGTAYVL 771

Query: 241  PEESEPTKGRILVFTVDDGQLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRD 300
            PEE+EPTKGRILVF V+DG+LQLIAEKETKGAVY LNAFNGKLLAAINQKIQLYKW+LRD
Sbjct: 772  PEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRD 831

Query: 301  DGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANW 360
            DGT ELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGAIEERARDYNANW
Sbjct: 832  DGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANW 891

Query: 361  MSAVEILDDDVYLGTENSFNLFTVRKNSEGATDEERGRLEVIGEYHLGEFVNRFRHGSLV 420
            MSAVEILDDD+YLG EN+FNL TV+KNSEGATDEERGRLEV+GEYHLGEFVNRFRHGSLV
Sbjct: 892  MSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLV 951

Query: 421  MRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWR 480
            MRLPDS++GQIPTVIFGT+NGVIGVIASLP EQY FLEKLQS+LRKVIKGVGGLSHEQWR
Sbjct: 952  MRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWR 1011

Query: 481  SFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDVSVEELCKRVEELTRLH 536
            SFNNEK+TAEARNFLDGDLIESFLDL+R+KM+++SK+++V VEELCKRVEELTRLH
Sbjct: 1012 SFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1067


>AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A |
            chr4:2746288-2752663 FORWARD LENGTH=1088
          Length = 1088

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/536 (88%), Positives = 515/536 (96%), Gaps = 1/536 (0%)

Query: 1    MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTS 60
            MWTDISVRIFSLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF ++T+
Sbjct: 554  MWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQMDTT 613

Query: 61   SGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 120
            +G+L DRKKVSLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM
Sbjct: 614  TGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 673

Query: 121  CPFNSAAIPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQSRTFAICSLK 180
            CPFNSAA PDSLAIA+EGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQ+RTF ICSL 
Sbjct: 674  CPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICSLG 733

Query: 181  YNHTSAEESESHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAYVL 240
             N +++EESE HFVRLLDDQTFEF+STYPLD++EYGC I+SCSF++D NVYYCVGTAYVL
Sbjct: 734  -NQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKNVYYCVGTAYVL 792

Query: 241  PEESEPTKGRILVFTVDDGQLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRD 300
            PEE+EPTKGRILVF V+DG+LQLIAEKETKGAVY LNAFNGKLLAAINQKIQLYKW+LRD
Sbjct: 793  PEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRD 852

Query: 301  DGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANW 360
            DGT ELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGAIEERARDYNANW
Sbjct: 853  DGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANW 912

Query: 361  MSAVEILDDDVYLGTENSFNLFTVRKNSEGATDEERGRLEVIGEYHLGEFVNRFRHGSLV 420
            MSAVEILDDD+YLG EN+FNL TV+KNSEGATDEERGRLEV+GEYHLGEFVNRFRHGSLV
Sbjct: 913  MSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLV 972

Query: 421  MRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWR 480
            MRLPDS++GQIPTVIFGT+NGVIGVIASLP EQY FLEKLQS+LRKVIKGVGGLSHEQWR
Sbjct: 973  MRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWR 1032

Query: 481  SFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDVSVEELCKRVEELTRLH 536
            SFNNEK+TAEARNFLDGDLIESFLDL+R+KM+++SK+++V VEELCKRVEELTRLH
Sbjct: 1033 SFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088


>AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B |
            chr4:11258916-11265309 REVERSE LENGTH=1088
          Length = 1088

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/536 (85%), Positives = 504/536 (94%), Gaps = 1/536 (0%)

Query: 1    MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTS 60
            MWTDISVRIF LPDL LITKE LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF L+TS
Sbjct: 554  MWTDISVRIFVLPDLTLITKEELGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQLDTS 613

Query: 61   SGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 120
             G+L DRKKVSLGT+PITLRTFSSK+ THVFAASDRP VIYS+NKKLLYSNVNLKEVSHM
Sbjct: 614  CGKLRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHM 673

Query: 121  CPFNSAAIPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQSRTFAICSLK 180
            CPFNSAA PDSLAIA+EGELTIGTIDDIQKLHIRTIP+GEHARRICHQEQ+RTFAI  L+
Sbjct: 674  CPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLR 733

Query: 181  YNHTSAEESESHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAYVL 240
             N  SAEESESHFVRLLD Q+FEF+S+YPLD +E GC I+SCSF+DD NVYYCVGTAYVL
Sbjct: 734  -NEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVYYCVGTAYVL 792

Query: 241  PEESEPTKGRILVFTVDDGQLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRD 300
            PEE+EPTKGRILVF V++G+LQLI EKETKGAVY LNAFNGKLLA+INQKIQLYKW+LRD
Sbjct: 793  PEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLASINQKIQLYKWMLRD 852

Query: 301  DGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANW 360
            DGT ELQSECGHHGHILALYVQTRGDFI VGDLMKSISLLIYKHEEGAIEERARDYNANW
Sbjct: 853  DGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANW 912

Query: 361  MSAVEILDDDVYLGTENSFNLFTVRKNSEGATDEERGRLEVIGEYHLGEFVNRFRHGSLV 420
            M+AVEIL+DD+YLGT+N FN+FTV+KN+EGATDEER R+EV+GEYH+GEFVNRFRHGSLV
Sbjct: 913  MTAVEILNDDIYLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHIGEFVNRFRHGSLV 972

Query: 421  MRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWR 480
            M+LPDSD+GQIPTVIFGT++G+IGVIASLP EQY FLEKLQ++LRKVIKGVGGLSHEQWR
Sbjct: 973  MKLPDSDIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWR 1032

Query: 481  SFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDVSVEELCKRVEELTRLH 536
            SFNNEK+TAEA+ +LDGDLIESFLDL+R KM+E+SK +DV VEELCKRVEELTRLH
Sbjct: 1033 SFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088


>AT3G55200.1 | Symbols:  | Cleavage and polyadenylation specificity
            factor (CPSF) A subunit protein | chr3:20460533-20464361
            FORWARD LENGTH=1214
          Length = 1214

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 120/569 (21%), Positives = 225/569 (39%), Gaps = 98/569 (17%)

Query: 42   YLLCALGDGHLLNFMLNTSSGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIY 101
            +L   L +G L   +++  +G+L+D +   LG +P  L + S +  + +   S RP + Y
Sbjct: 659  FLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGY 718

Query: 102  SSNKKLLYSNVNLKEVSHMCPFNSAAIPDSLAIAKEGELTIGTIDDIQKLHIRTI-PLG- 159
                    + ++ + +    PF+S    + +       L I  ID + +    T+ PL  
Sbjct: 719  IHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRY 778

Query: 160  -----------------------------EHARRICHQ--------------------EQ 170
                                         E AR+ C +                    ++
Sbjct: 779  TPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDE 838

Query: 171  SRTFAICSLKYNHTSAE-ESESHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSD-DN 228
             +   +   +Y +  AE E     +R+LD +T        L   E    + + +F D + 
Sbjct: 839  DKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEY 898

Query: 229  NVYYCVGTAYVLPEESEPTKGRILVFT-----VDDGQ-LQLIAEKETKGAVYCLNAFNGK 282
                 VGT   +  +  P K  +  F      V+DG+ L+L+ + + +G    L  F G+
Sbjct: 899  GTLLAVGTVKGM--QFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGR 956

Query: 283  LLAAINQKIQLYKWVLRDDGTHELQSECGHHGHI-LALYVQTRGDFIVVGDLMKSISLLI 341
            LLA I   ++LY     D G   L  +C +       + +QT  D I VGD+ +S     
Sbjct: 957  LLAGIGPVLRLY-----DLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCK 1011

Query: 342  YKHEEGAIEERARDYNANWMSAVEILDDDVYLGTENSFNLFTVR---------------- 385
            Y+ +E  +   A D    W++A   +D D   G +   N++ VR                
Sbjct: 1012 YRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGG 1071

Query: 386  --KNSEGATDEERGRLEVIGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVI 443
              K  +G  +    +++ I ++H+G+ V   +  S++        G   ++++GT+ G I
Sbjct: 1072 KIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMI-------PGGSESIMYGTVMGSI 1124

Query: 444  GVIASLPHEQYV-FLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIES 502
            G + +      V F   L+ ++R+    + G  H  +RS          ++ +DGDL E 
Sbjct: 1125 GALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRS-----AYFPVKDVIDGDLCEQ 1179

Query: 503  FLDLNRSKMDEVSKALDVSVEELCKRVEE 531
            F  L      +++  LD +  E+ K++E+
Sbjct: 1180 FPTLPMDLQRKIADELDRTPAEILKKLED 1208


>AT3G55220.1 | Symbols:  | Cleavage and polyadenylation specificity
            factor (CPSF) A subunit protein | chr3:20467116-20470944
            REVERSE LENGTH=1214
          Length = 1214

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 120/569 (21%), Positives = 225/569 (39%), Gaps = 98/569 (17%)

Query: 42   YLLCALGDGHLLNFMLNTSSGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIY 101
            +L   L +G L   +++  +G+L+D +   LG +P  L + S +  + +   S RP + Y
Sbjct: 659  FLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGY 718

Query: 102  SSNKKLLYSNVNLKEVSHMCPFNSAAIPDSLAIAKEGELTIGTIDDIQKLHIRTI-PLG- 159
                    + ++ + +    PF+S    + +       L I  ID + +    T+ PL  
Sbjct: 719  IHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRY 778

Query: 160  -----------------------------EHARRICHQ--------------------EQ 170
                                         E AR+ C +                    ++
Sbjct: 779  TPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDE 838

Query: 171  SRTFAICSLKYNHTSAE-ESESHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSD-DN 228
             +   +   +Y +  AE E     +R+LD +T        L   E    + + +F D + 
Sbjct: 839  DKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEY 898

Query: 229  NVYYCVGTAYVLPEESEPTKGRILVFT-----VDDGQ-LQLIAEKETKGAVYCLNAFNGK 282
                 VGT   +  +  P K  +  F      V+DG+ L+L+ + + +G    L  F G+
Sbjct: 899  GTLLAVGTVKGM--QFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGR 956

Query: 283  LLAAINQKIQLYKWVLRDDGTHELQSECGHHGHI-LALYVQTRGDFIVVGDLMKSISLLI 341
            LLA I   ++LY     D G   L  +C +       + +QT  D I VGD+ +S     
Sbjct: 957  LLAGIGPVLRLY-----DLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCK 1011

Query: 342  YKHEEGAIEERARDYNANWMSAVEILDDDVYLGTENSFNLFTVR---------------- 385
            Y+ +E  +   A D    W++A   +D D   G +   N++ VR                
Sbjct: 1012 YRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGG 1071

Query: 386  --KNSEGATDEERGRLEVIGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVI 443
              K  +G  +    +++ I ++H+G+ V   +  S++        G   ++++GT+ G I
Sbjct: 1072 KIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMI-------PGGSESIMYGTVMGSI 1124

Query: 444  GVIASLPHEQYV-FLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIES 502
            G + +      V F   L+ ++R+    + G  H  +RS          ++ +DGDL E 
Sbjct: 1125 GALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRS-----AYFPVKDVIDGDLCEQ 1179

Query: 503  FLDLNRSKMDEVSKALDVSVEELCKRVEE 531
            F  L      +++  LD +  E+ K++E+
Sbjct: 1180 FPTLPMDLQRKIADELDRTPAEILKKLED 1208


>AT5G51660.1 | Symbols: CPSF160, ATCPSF160 | cleavage and
            polyadenylation specificity factor 160 |
            chr5:20980250-20989268 FORWARD LENGTH=1442
          Length = 1442

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 138/306 (45%), Gaps = 32/306 (10%)

Query: 202  FEFISTYPLDTYEYGCFIISCSF----SDDNNVYYCVGTAYVLPEESEPTKGRILVFTVD 257
            +E  +  P+ T E+   +   +     + +N     VGTAYV  E+    +GR+L+F+  
Sbjct: 1097 WETKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGEDVA-ARGRVLLFSFG 1155

Query: 258  ---DGQLQLIAE---KETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRDDGTHELQSECG 311
               D    ++ E   +E KGA+  + +  G LL +   KI L+KW    +GT        
Sbjct: 1156 KNGDNSQNVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKW----NGTELNGVAFF 1211

Query: 312  HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDV 371
                +  + +     FI++GD+ KSI  L +K +   +   A+D+ +    A E L D  
Sbjct: 1212 DAPPLYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLID-- 1269

Query: 372  YLGTENSFNLFTVRKN------SEGATDEERG-RLEVIGEYHLGEFVNRFRHGSLVMRLP 424
              G+  S  +   +KN      +    +  +G +L    E+H+G  V++F    L +++ 
Sbjct: 1270 --GSTLSLAVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFHVGAHVSKF----LRLQMV 1323

Query: 425  DSDVGQIP--TVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSF 482
             S   +I    ++FGT++G  G IA L    +  L+ LQ  L   +  V GL+   +R F
Sbjct: 1324 SSGADKINRFALLFGTLDGSFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQF 1383

Query: 483  NNEKKT 488
             +  K 
Sbjct: 1384 RSSGKA 1389


>AT3G11960.2 | Symbols:  | Cleavage and polyadenylation specificity
            factor (CPSF) A subunit protein | chr3:3786431-3793160
            FORWARD LENGTH=1329
          Length = 1329

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 16/123 (13%)

Query: 405  YHLGEFVNRFRHGSLVMRLPDSDVGQI-----------PTVIFGTINGVIGVIASLPHEQ 453
            Y++GE     + G  + +LP  DV +             T+I GT+ G I V A +  E+
Sbjct: 1170 YYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEE 1229

Query: 454  YVFLEKLQSNL--RKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIESFLDLNRSKM 511
            Y  LE +Q+ L    +   V G  H ++R   N    ++AR  LDGD++  FL+L   + 
Sbjct: 1230 YELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENP---SQARKILDGDMLAQFLELTNRQQ 1286

Query: 512  DEV 514
            + V
Sbjct: 1287 ESV 1289



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 72  LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAIPDS 131
           +G  P+ L  FS    + + A SDRP ++ ++ + L Y++++ +  +H  P  S   P  
Sbjct: 764 IGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQG 823

Query: 132 LAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQSRTFAICSLKYNHTSAEESES 191
           +    E  L +  +   ++ + +   LG   R++ +  +S+   +       T   +   
Sbjct: 824 ILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLYDTCTSD--- 880

Query: 192 HFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAY-----VLPE-ESE 245
             +  +D  +   +S+Y L   E G  +      +++ +   VGT+      +LP  E+E
Sbjct: 881 --ICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLV--VGTSLSSGPAILPSGEAE 936

Query: 246 PTKGRILVFTVDDGQ 260
            TKGR+++  ++  Q
Sbjct: 937 STKGRVIILCLEHTQ 951


>AT3G11960.1 | Symbols:  | Cleavage and polyadenylation specificity
            factor (CPSF) A subunit protein | chr3:3786431-3793160
            FORWARD LENGTH=1379
          Length = 1379

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 16/123 (13%)

Query: 405  YHLGEFVNRFRHGSLVMRLPDSDVGQI-----------PTVIFGTINGVIGVIASLPHEQ 453
            Y++GE     + G  + +LP  DV +             T+I GT+ G I V A +  E+
Sbjct: 1220 YYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEE 1279

Query: 454  YVFLEKLQSNL--RKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIESFLDLNRSKM 511
            Y  LE +Q+ L    +   V G  H ++R   N    ++AR  LDGD++  FL+L   + 
Sbjct: 1280 YELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENP---SQARKILDGDMLAQFLELTNRQQ 1336

Query: 512  DEV 514
            + V
Sbjct: 1337 ESV 1339



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 72   LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAIPDS 131
            +G  P+ L  FS    + + A SDRP ++ ++ + L Y++++ +  +H  P  S   P  
Sbjct: 822  IGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQG 881

Query: 132  LAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQSRTFAICSLKYNHTSAEESES 191
            +    E  L +  +   ++ + +   LG   R++ +  +S+   +       T   +   
Sbjct: 882  ILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLYDTCTSD--- 938

Query: 192  HFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAY-----VLPE-ESE 245
              +  +D  +   +S+Y L   E G  +      +++ +   VGT+      +LP  E+E
Sbjct: 939  --ICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLV--VGTSLSSGPAILPSGEAE 994

Query: 246  PTKGRILVFTVDDGQ 260
             TKGR+++  ++  Q
Sbjct: 995  STKGRVIILCLEHTQ 1009